Wall clock time and date at job start Tue Mar 31 2020 12:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.42905 * 307.53837 * 11 10 9 13 13 C 1.54885 * 110.48820 * 70.22427 * 11 10 9 14 14 C 1.54897 * 102.74561 * 156.62056 * 13 11 10 15 15 C 1.54263 * 104.19440 * 322.05564 * 14 13 11 16 16 H 1.09004 * 110.02809 * 142.89364 * 15 14 13 17 17 N 1.46493 * 110.07341 * 264.30228 * 15 14 13 18 18 C 1.34780 * 120.00180 * 272.19540 * 17 15 14 19 19 O 1.21681 * 119.99905 * 359.97438 * 18 17 15 20 20 C 1.46817 * 120.00132 * 180.02562 * 18 17 15 21 21 C 1.36347 * 125.84846 * 179.97438 * 20 18 17 22 22 C 1.41310 * 107.00768 * 179.97438 * 21 20 18 23 23 C 1.47393 * 126.45710 * 179.97438 * 22 21 20 24 24 N 1.34778 * 119.99332 * 180.02562 * 23 22 21 25 25 O 1.21605 * 120.00335 * 0.02562 * 23 22 21 26 26 C 1.38202 * 107.07631 * 0.02562 * 22 21 20 27 27 N 1.34263 * 108.39643 * 359.76132 * 26 22 21 28 28 H 0.96997 * 125.39573 * 180.22821 * 27 26 22 29 29 C 1.53877 * 106.60011 * 23.61240 * 15 14 13 30 30 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 33 33 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 34 34 H 1.08999 * 110.75700 * 274.92940 * 13 11 10 35 35 H 1.08990 * 110.75845 * 38.30867 * 13 11 10 36 36 H 1.09001 * 110.48410 * 203.37957 * 14 13 11 37 37 H 1.09004 * 110.48190 * 80.73453 * 14 13 11 38 38 H 0.96998 * 120.00347 * 92.19082 * 17 15 14 39 39 H 1.08003 * 126.49462 * 359.94331 * 21 20 18 40 40 H 0.96999 * 120.00376 * 0.02562 * 24 23 22 41 41 H 0.97004 * 119.99641 * 180.02562 * 24 23 22 42 42 H 1.08001 * 125.80386 * 179.97438 * 26 22 21 43 43 H 1.09000 * 110.03023 * 240.71282 * 29 15 14 44 44 H 1.09001 * 110.02849 * 119.28285 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 6 5.6163 -2.1913 0.0170 12 1 5.8803 -1.5113 -0.7929 13 6 6.0534 -1.6072 1.3833 14 6 7.5612 -1.9575 1.4381 15 6 7.6473 -3.3596 0.8005 16 1 8.5567 -3.4440 0.2056 17 7 7.6332 -4.3880 1.8437 18 6 8.7879 -4.7849 2.4144 19 8 9.8421 -4.2894 2.0628 20 6 8.7738 -5.8160 3.4595 21 6 9.8656 -6.3049 4.1137 22 6 9.3987 -7.2734 5.0306 23 6 10.2219 -8.0700 5.9581 24 7 9.6371 -8.9631 6.7808 25 8 11.4286 -7.9214 5.9810 26 6 8.0249 -7.3336 4.8929 27 7 7.6545 -6.4519 3.9506 28 1 6.7434 -6.2897 3.6600 29 6 6.4106 -3.5083 -0.1031 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3621 0.0055 32 1 3.8450 -3.0407 0.9008 33 1 3.8524 -3.0443 -0.8791 34 1 5.9066 -0.5274 1.4065 35 1 5.5151 -2.0890 2.1994 36 1 7.9089 -1.9860 2.4708 37 1 8.1410 -1.2388 0.8589 38 1 6.7928 -4.7833 2.1238 39 1 10.8927 -6.0084 3.9598 40 1 8.6746 -9.0819 6.7622 41 1 10.1788 -9.4872 7.3915 42 1 7.3616 -7.9777 5.4511 43 1 5.7996 -4.3451 0.2351 44 1 6.7200 -3.6649 -1.1364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755747963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:39 Heat of formation + Delta-G solvation = -29.375532 kcal Electronic energy + Delta-G solvation = -25844.828934 eV Core-core repulsion = 21990.357662 eV Total energy + Delta-G solvation = -3854.471272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.02309 -39.97421 -39.10125 -38.04579 -35.07965 -34.05495 -33.55245 -31.73132 -31.38043 -30.02841 -29.13194 -27.97392 -24.72749 -23.83293 -23.28838 -21.93321 -20.76202 -20.40705 -20.24596 -19.76327 -19.23594 -17.57795 -17.35252 -16.77177 -16.49826 -16.06411 -15.74635 -15.49364 -14.80913 -14.58049 -14.45343 -14.20617 -14.04161 -13.86471 -13.70013 -13.44562 -13.27934 -12.83013 -12.72524 -12.30360 -11.95322 -11.78606 -11.42508 -11.01009 -10.96550 -10.61697 -10.49295 -10.45286 -10.41585 -10.29875 -10.12107 -10.05729 -9.63966 -9.58945 -9.36144 -8.94272 -8.82564 -7.27866 -5.81944 -3.17320 0.98736 1.42620 2.44732 2.78043 2.94191 3.23859 3.27855 3.33397 3.36420 3.41823 4.29396 4.37215 4.47803 4.54141 4.55005 4.58156 4.79776 4.85901 5.23745 5.34229 5.40149 5.42810 5.47586 5.52823 5.55689 5.64271 5.71569 5.83703 5.89825 5.92929 5.97071 6.10574 6.22047 6.29147 6.34238 6.39637 6.42212 6.61536 6.68021 6.71879 6.99913 7.18333 7.87428 7.93853 7.97934 8.37247 9.16584 9.89159 10.09151 11.36445 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023175 B = 0.002172 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.932909 B =12889.277090 C =13504.121170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.166 3.834 11 C -0.103 4.103 12 H 0.078 0.922 13 C -0.115 4.115 14 C -0.134 4.134 15 C 0.142 3.858 16 H 0.093 0.907 17 N -0.720 5.720 18 C 0.587 3.413 19 O -0.524 6.524 20 C -0.057 4.057 21 C -0.044 4.044 22 C -0.239 4.239 23 C 0.594 3.406 24 N -0.856 5.856 25 O -0.544 6.544 26 C 0.074 3.926 27 N -0.522 5.522 28 H 0.423 0.577 29 C -0.121 4.121 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.024 0.976 33 H 0.026 0.974 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.394 0.606 39 H 0.159 0.841 40 H 0.398 0.602 41 H 0.404 0.596 42 H 0.182 0.818 43 H 0.073 0.927 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.280 -17.823 10.500 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.039 3.961 11 C -0.122 4.122 12 H 0.096 0.904 13 C -0.152 4.152 14 C -0.173 4.173 15 C 0.038 3.962 16 H 0.111 0.889 17 N -0.371 5.371 18 C 0.374 3.626 19 O -0.400 6.400 20 C -0.168 4.168 21 C -0.070 4.070 22 C -0.250 4.250 23 C 0.381 3.619 24 N -0.419 5.419 25 O -0.422 6.422 26 C -0.068 4.068 27 N -0.117 5.117 28 H 0.262 0.738 29 C -0.160 4.160 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.228 0.772 39 H 0.177 0.823 40 H 0.226 0.774 41 H 0.235 0.765 42 H 0.199 0.801 43 H 0.091 0.909 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.449 -17.212 9.986 26.466 hybrid contribution -0.836 0.766 0.346 1.186 sum 16.613 -16.445 10.332 25.557 Atomic orbital electron populations 1.69698 1.05116 1.25868 1.57538 1.24686 0.95255 0.97266 1.02029 0.86541 0.79195 0.84914 0.77825 1.21050 1.21734 1.20308 1.19046 0.80706 0.94661 1.43072 0.89334 1.42700 1.03980 1.02277 1.91102 1.20654 0.87879 0.89303 0.98278 1.22245 0.96144 0.95908 0.97913 0.90388 1.22539 0.94084 1.01330 0.97271 1.22805 0.97559 0.95786 1.01107 1.21704 0.99787 0.86833 0.87872 0.88935 1.46113 1.08400 1.41946 1.40652 1.17046 0.84331 0.80759 0.80454 1.90870 1.30598 1.56123 1.62389 1.20197 0.86799 1.04528 1.05309 1.21108 0.98627 0.94104 0.93144 1.19599 0.92452 1.06721 1.06187 1.17388 0.86841 0.78552 0.79140 1.43682 1.11954 1.43473 1.42801 1.90839 1.14445 1.67512 1.69359 1.22421 0.95488 0.95202 0.93692 1.41784 1.09413 1.30382 1.30122 0.73834 1.22442 0.95062 0.98817 0.99659 0.93042 0.80619 0.95817 0.95651 0.91347 0.91344 0.91470 0.90702 0.77238 0.82322 0.77394 0.76547 0.80126 0.90885 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.96 13.97 55.49 0.78 -28.18 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 21.79 27.74 -169.99 -4.72 17.07 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.37 6.51 56.52 0.37 -6.00 16 7 C -0.24 -6.77 10.47 -15.06 -0.16 -6.93 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 9 N -0.76 -17.21 5.30 -59.90 -0.32 -17.52 16 10 C 0.17 2.92 5.54 -4.04 -0.02 2.90 16 11 C -0.10 -1.39 2.89 -88.96 -0.26 -1.64 16 12 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 13 C -0.11 -1.50 6.19 -24.74 -0.15 -1.65 16 14 C -0.13 -1.53 6.54 -25.07 -0.16 -1.69 16 15 C 0.14 1.47 3.24 -66.82 -0.22 1.26 16 16 H 0.09 1.05 7.56 -51.93 -0.39 0.66 16 17 N -0.72 -6.47 5.03 -53.99 -0.27 -6.74 16 18 C 0.59 6.55 7.79 -12.79 -0.10 6.45 16 19 O -0.52 -7.89 16.51 5.21 0.09 -7.80 16 20 C -0.06 -0.53 6.99 -82.40 -0.58 -1.10 16 21 C -0.04 -0.47 10.37 -39.10 -0.41 -0.87 16 22 C -0.24 -1.98 6.13 -105.02 -0.64 -2.63 16 23 C 0.59 5.46 8.09 -12.53 -0.10 5.36 16 24 N -0.86 -3.65 8.86 30.42 0.27 -3.38 16 25 O -0.54 -7.60 17.75 5.27 0.09 -7.50 16 26 C 0.07 0.33 11.43 -16.50 -0.19 0.14 16 27 N -0.52 -2.64 5.91 -9.30 -0.05 -2.70 16 28 H 0.42 0.91 8.14 -40.82 -0.33 0.58 16 29 C -0.12 -1.24 6.14 -25.61 -0.16 -1.40 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.36 8.08 5.49 -40.82 -0.22 7.86 16 32 H 0.02 0.42 8.02 -51.93 -0.42 0.00 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.91 7.96 -51.93 -0.41 0.49 16 36 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.39 2.50 7.40 -40.82 -0.30 2.19 16 39 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 40 H 0.40 0.32 7.74 -40.82 -0.32 0.01 16 41 H 0.40 1.37 8.93 -40.82 -0.36 1.01 16 42 H 0.18 -0.04 7.44 -52.49 -0.39 -0.43 16 43 H 0.07 0.67 7.31 -51.93 -0.38 0.29 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -38.52 368.28 -7.90 -46.42 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.08 Total: 6.59 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.24 Total: -1.81 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.40 Total: -58.52 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.18 Total: -15.31 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.72 Total: 17.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.52 -7.90 -46.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755747963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.044 kcal (2) G-P(sol) polarization free energy of solvation -38.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds