Wall clock time and date at job start Tue Mar 31 2020 12:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.42905 * 307.53837 * 11 10 9 13 13 C 1.54885 * 110.48820 * 70.22427 * 11 10 9 14 14 C 1.54897 * 102.74561 * 156.62056 * 13 11 10 15 15 C 1.54263 * 104.19440 * 322.05564 * 14 13 11 16 16 H 1.09004 * 110.02809 * 142.89364 * 15 14 13 17 17 N 1.46493 * 110.07341 * 264.30228 * 15 14 13 18 18 C 1.34780 * 120.00180 * 272.19540 * 17 15 14 19 19 O 1.21681 * 119.99905 * 359.97438 * 18 17 15 20 20 C 1.46817 * 120.00132 * 180.02562 * 18 17 15 21 21 C 1.36347 * 125.84846 * 179.97438 * 20 18 17 22 22 C 1.41310 * 107.00768 * 179.97438 * 21 20 18 23 23 C 1.47393 * 126.45710 * 179.97438 * 22 21 20 24 24 N 1.34778 * 119.99332 * 180.02562 * 23 22 21 25 25 O 1.21605 * 120.00335 * 0.02562 * 23 22 21 26 26 C 1.38202 * 107.07631 * 0.02562 * 22 21 20 27 27 N 1.34263 * 108.39643 * 359.76132 * 26 22 21 28 28 H 0.96997 * 125.39573 * 180.22821 * 27 26 22 29 29 C 1.53877 * 106.60011 * 23.61240 * 15 14 13 30 30 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 33 33 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 34 34 H 1.08999 * 110.75700 * 274.92940 * 13 11 10 35 35 H 1.08990 * 110.75845 * 38.30867 * 13 11 10 36 36 H 1.09001 * 110.48410 * 203.37957 * 14 13 11 37 37 H 1.09004 * 110.48190 * 80.73453 * 14 13 11 38 38 H 0.96998 * 120.00347 * 92.19082 * 17 15 14 39 39 H 1.08003 * 126.49462 * 359.94331 * 21 20 18 40 40 H 0.96999 * 120.00376 * 0.02562 * 24 23 22 41 41 H 0.97004 * 119.99641 * 180.02562 * 24 23 22 42 42 H 1.08001 * 125.80386 * 179.97438 * 26 22 21 43 43 H 1.09000 * 110.03023 * 240.71282 * 29 15 14 44 44 H 1.09001 * 110.02849 * 119.28285 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 6 5.6163 -2.1913 0.0170 12 1 5.8803 -1.5113 -0.7929 13 6 6.0534 -1.6072 1.3833 14 6 7.5612 -1.9575 1.4381 15 6 7.6473 -3.3596 0.8005 16 1 8.5567 -3.4440 0.2056 17 7 7.6332 -4.3880 1.8437 18 6 8.7879 -4.7849 2.4144 19 8 9.8421 -4.2894 2.0628 20 6 8.7738 -5.8160 3.4595 21 6 9.8656 -6.3049 4.1137 22 6 9.3987 -7.2734 5.0306 23 6 10.2219 -8.0700 5.9581 24 7 9.6371 -8.9631 6.7808 25 8 11.4286 -7.9214 5.9810 26 6 8.0249 -7.3336 4.8929 27 7 7.6545 -6.4519 3.9506 28 1 6.7434 -6.2897 3.6600 29 6 6.4106 -3.5083 -0.1031 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3621 0.0055 32 1 3.8450 -3.0407 0.9008 33 1 3.8524 -3.0443 -0.8791 34 1 5.9066 -0.5274 1.4065 35 1 5.5151 -2.0890 2.1994 36 1 7.9089 -1.9860 2.4708 37 1 8.1410 -1.2388 0.8589 38 1 6.7928 -4.7833 2.1238 39 1 10.8927 -6.0084 3.9598 40 1 8.6746 -9.0819 6.7622 41 1 10.1788 -9.4872 7.3915 42 1 7.3616 -7.9777 5.4511 43 1 5.7996 -4.3451 0.2351 44 1 6.7200 -3.6649 -1.1364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755747963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:38 Heat of formation + Delta-G solvation = -61.987808 kcal Electronic energy + Delta-G solvation = -25846.243108 eV Core-core repulsion = 21990.357662 eV Total energy + Delta-G solvation = -3855.885446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.62745 -40.83827 -39.82315 -39.06891 -36.60841 -34.85180 -34.62334 -33.29868 -32.26642 -30.86121 -30.26136 -28.98814 -26.22784 -24.51802 -24.00066 -23.66470 -21.53644 -21.34051 -21.06310 -20.54146 -20.02672 -19.46748 -17.88177 -17.55465 -17.24266 -16.82291 -16.66377 -16.48467 -16.20836 -15.82856 -15.57351 -15.18473 -14.95321 -14.77616 -14.63580 -14.54302 -14.36597 -14.28535 -13.68571 -13.55749 -13.38575 -12.89003 -12.73682 -12.55316 -12.14288 -11.99387 -11.86074 -11.70090 -11.61112 -11.49984 -11.30538 -11.16573 -10.93839 -10.63283 -10.26220 -10.15899 -9.40856 -9.26541 -8.02278 -5.34453 0.37598 0.76658 1.38101 1.40742 1.48095 1.92192 2.06995 2.16844 2.48542 2.56659 2.78462 3.29460 3.49020 3.54550 3.78066 3.86164 3.89366 3.96036 4.07516 4.26978 4.40018 4.48777 4.50603 4.58453 4.65409 4.71570 4.79528 4.88119 4.91225 4.99263 5.08499 5.13258 5.20853 5.32484 5.35742 5.48202 5.51712 5.59206 5.77283 5.98347 6.22314 6.30096 6.47631 6.61386 7.08164 7.09730 7.46257 7.87754 8.05153 9.19182 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023175 B = 0.002172 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.932909 B =12889.277090 C =13504.121170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.952 3.048 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.251 1.251 7 C -0.230 4.230 8 H 0.059 0.941 9 N -0.759 5.759 10 C 0.162 3.838 11 C -0.096 4.096 12 H 0.076 0.924 13 C -0.112 4.112 14 C -0.127 4.127 15 C 0.147 3.853 16 H 0.085 0.915 17 N -0.705 5.705 18 C 0.587 3.413 19 O -0.573 6.573 20 C -0.070 4.070 21 C -0.072 4.072 22 C -0.270 4.270 23 C 0.589 3.411 24 N -0.829 5.829 25 O -0.607 6.607 26 C 0.124 3.876 27 N -0.504 5.504 28 H 0.441 0.559 29 C -0.109 4.109 30 H 0.257 0.743 31 H 0.365 0.635 32 H 0.031 0.969 33 H 0.025 0.975 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.409 0.591 39 H 0.127 0.873 40 H 0.419 0.581 41 H 0.410 0.590 42 H 0.241 0.759 43 H 0.090 0.910 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.856 -19.149 11.349 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.175 1.175 7 C -0.361 4.361 8 H 0.077 0.923 9 N -0.404 5.404 10 C 0.036 3.964 11 C -0.115 4.115 12 H 0.094 0.906 13 C -0.150 4.150 14 C -0.165 4.165 15 C 0.042 3.958 16 H 0.103 0.897 17 N -0.357 5.357 18 C 0.376 3.624 19 O -0.452 6.452 20 C -0.181 4.181 21 C -0.098 4.098 22 C -0.280 4.280 23 C 0.377 3.623 24 N -0.393 5.393 25 O -0.490 6.490 26 C -0.021 4.021 27 N -0.100 5.100 28 H 0.284 0.716 29 C -0.148 4.148 30 H 0.066 0.934 31 H 0.198 0.802 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.246 0.754 39 H 0.145 0.855 40 H 0.251 0.749 41 H 0.242 0.758 42 H 0.257 0.743 43 H 0.108 0.892 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.972 -18.598 10.848 27.416 hybrid contribution -0.775 1.021 0.123 1.288 sum 16.196 -17.578 10.971 26.299 Atomic orbital electron populations 1.69875 1.07088 1.26586 1.59959 1.25500 0.96105 1.01210 1.02965 0.85446 0.78728 0.79820 0.78023 1.20645 1.22484 1.17519 1.19057 0.82875 0.93400 1.40801 0.92320 1.42755 1.02378 1.04442 1.90861 1.20871 0.90055 0.87156 0.98302 1.22129 0.93476 0.97735 0.98112 0.90603 1.22487 0.95072 1.00409 0.96997 1.22726 0.96369 0.96503 1.00944 1.21567 0.99574 0.86597 0.88023 0.89712 1.45933 1.08597 1.41271 1.39872 1.17286 0.83998 0.80673 0.80473 1.90843 1.32367 1.57939 1.64050 1.19709 0.87872 1.05029 1.05490 1.21057 0.97990 0.95807 0.94956 1.19594 0.94313 1.07296 1.06753 1.17621 0.86156 0.78983 0.79545 1.43437 1.13173 1.41560 1.41110 1.90806 1.17090 1.69673 1.71410 1.23195 0.94357 0.93161 0.91355 1.41736 1.09271 1.29492 1.29532 0.71633 1.22347 0.94454 0.97468 1.00491 0.93437 0.80221 0.95126 0.95732 0.92748 0.91337 0.92037 0.90526 0.75376 0.85485 0.74948 0.75794 0.74301 0.89200 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.08 13.97 21.65 0.30 -61.77 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.95 44.63 27.74 68.60 1.90 46.53 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.25 -10.51 6.51 99.48 0.65 -9.87 16 7 C -0.23 -12.69 10.47 84.04 0.88 -11.81 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 9 N -0.76 -33.36 5.30 -343.44 -1.82 -35.18 16 10 C 0.16 5.35 5.54 86.38 0.48 5.83 16 11 C -0.10 -2.32 2.89 -9.72 -0.03 -2.35 16 12 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 13 C -0.11 -2.68 6.19 31.89 0.20 -2.48 16 14 C -0.13 -2.68 6.54 31.67 0.21 -2.47 16 15 C 0.15 2.75 3.24 45.72 0.15 2.89 16 16 H 0.08 1.81 7.56 -2.38 -0.02 1.79 16 17 N -0.71 -11.16 5.03 -442.93 -2.23 -13.38 16 18 C 0.59 12.75 7.79 86.49 0.67 13.43 16 19 O -0.57 -17.77 16.51 -4.29 -0.07 -17.85 16 20 C -0.07 -1.21 6.99 40.01 0.28 -0.93 16 21 C -0.07 -1.57 10.37 22.58 0.23 -1.33 16 22 C -0.27 -4.11 6.13 -20.12 -0.12 -4.24 16 23 C 0.59 10.47 8.09 86.65 0.70 11.17 16 24 N -0.83 -5.00 8.86 -175.91 -1.56 -6.56 16 25 O -0.61 -17.88 17.75 -4.05 -0.07 -17.95 16 26 C 0.12 0.55 11.43 84.31 0.96 1.51 16 27 N -0.50 -3.26 5.91 -183.35 -1.08 -4.34 16 28 H 0.44 -0.20 8.14 -92.71 -0.75 -0.96 16 29 C -0.11 -1.90 6.14 31.32 0.19 -1.71 16 30 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.36 15.48 5.49 -92.71 -0.51 14.97 16 32 H 0.03 0.99 8.02 -2.39 -0.02 0.97 16 33 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.64 7.96 -2.39 -0.02 1.62 16 36 H 0.06 1.39 8.04 -2.39 -0.02 1.37 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.41 3.80 7.40 -92.71 -0.69 3.11 16 39 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.42 -1.14 7.74 -92.71 -0.72 -1.86 16 41 H 0.41 1.96 8.93 -92.71 -0.83 1.13 16 42 H 0.24 -1.85 7.44 -2.91 -0.02 -1.88 16 43 H 0.09 1.29 7.31 -2.39 -0.02 1.27 16 44 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -89.78 368.28 -1.82 -91.60 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -2.46 Total: 14.77 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 5.27 Total: 4.14 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -6.39 Total: -121.24 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.14 Total: -35.80 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Total: -89.78 -1.82 -91.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755747963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.609 kcal (2) G-P(sol) polarization free energy of solvation -89.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds