Wall clock time and date at job start Tue Mar 31 2020 12:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35450 * 126.77982 * 2 1 4 4 C 1.41369 * 103.98586 * 180.09317 * 3 2 1 5 5 C 1.50704 * 126.80402 * 179.89126 * 4 3 2 6 6 N 1.46893 * 109.47295 * 94.70789 * 5 4 3 7 7 C 1.46901 * 111.00360 * 293.95434 * 6 5 4 8 8 C 1.46906 * 110.99932 * 170.00151 * 6 5 4 9 9 C 1.50703 * 109.47109 * 190.00029 * 8 6 5 10 10 O 1.21282 * 120.00082 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99978 * 180.02562 * 9 8 6 12 12 C 1.46496 * 119.99846 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.47056 * 90.00088 * 12 11 9 14 14 H 1.07998 * 120.00154 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99692 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00450 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99776 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46995 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47261 * 119.99729 * 17 15 13 20 20 H 1.48498 * 109.46859 * 239.99722 * 17 15 13 21 21 C 1.46497 * 119.99801 * 359.97438 * 11 9 8 22 22 C 1.53005 * 109.46961 * 90.00424 * 21 11 9 23 23 C 1.47204 * 109.46788 * 179.97438 * 22 21 11 24 24 N 9.36452 * 153.92170 * 180.34562 * 3 2 1 25 25 N 1.30180 * 106.39978 * 359.62665 * 4 3 2 26 26 O 1.20921 * 111.60064 * 0.23742 * 25 4 3 27 27 H 1.09000 * 109.47351 * 180.29964 * 1 2 3 28 28 H 1.08997 * 109.47232 * 300.30710 * 1 2 3 29 29 H 1.09007 * 109.47004 * 60.30300 * 1 2 3 30 30 H 1.08003 * 128.00234 * 359.95985 * 3 2 1 31 31 H 1.09004 * 109.46439 * 334.70775 * 5 4 3 32 32 H 1.08994 * 109.47235 * 214.71576 * 5 4 3 33 33 H 1.08995 * 109.47046 * 296.04847 * 7 6 5 34 34 H 1.09008 * 109.46903 * 56.04730 * 7 6 5 35 35 H 1.08999 * 109.47457 * 176.04446 * 7 6 5 36 36 H 1.08992 * 109.47459 * 309.99948 * 8 6 5 37 37 H 1.09004 * 109.47040 * 70.00098 * 8 6 5 38 38 H 1.09002 * 109.47248 * 209.99764 * 12 11 9 39 39 H 1.09000 * 109.47481 * 330.00016 * 12 11 9 40 40 H 0.96994 * 120.00664 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.47065 * 210.00008 * 21 11 9 42 42 H 1.09002 * 109.47641 * 330.00367 * 21 11 9 43 43 H 1.09000 * 109.46892 * 299.99690 * 22 21 11 44 44 H 1.08998 * 109.46794 * 60.00269 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5372 -0.0022 5 6 4.9211 1.2998 -0.0055 6 7 5.4038 1.4507 1.3737 7 6 4.5002 2.3035 2.1574 8 6 6.7755 1.9760 1.3968 9 6 7.3239 1.8872 2.7978 10 8 6.6392 1.4316 3.6892 11 7 8.5747 2.3149 3.0602 12 6 9.1079 2.2280 4.4219 13 6 9.7937 0.8992 4.6090 14 1 9.8285 0.1901 3.7951 15 6 10.3758 0.5883 5.8196 16 7 10.3330 1.4514 6.8108 17 14 11.2253 -1.0592 6.0517 18 1 11.1349 -1.8442 4.7944 19 1 12.6527 -0.8361 6.3950 20 1 10.5631 -1.8070 7.1505 21 6 9.4014 2.8657 1.9835 22 6 9.1788 4.3767 1.8917 23 6 10.0100 4.9302 0.8102 24 7 10.6512 5.3570 -0.0248 25 7 3.4763 -0.7565 0.0048 26 8 2.3095 -1.0737 0.0062 27 1 -0.3634 -1.0276 0.0054 28 1 -0.3633 0.5186 0.8872 29 1 -0.3633 0.5092 -0.8928 30 1 2.0345 2.1270 -0.0006 31 1 4.7632 2.2848 -0.4450 32 1 5.6608 0.7547 -0.5918 33 1 4.4962 3.3098 1.7388 34 1 3.4915 1.8918 2.1235 35 1 4.8424 2.3416 3.1916 36 1 7.4008 1.3891 0.7241 37 1 6.7714 3.0170 1.0736 38 1 9.8250 3.0329 4.5834 39 1 8.2916 2.3196 5.1384 40 1 10.7429 1.2329 7.6624 41 1 10.4521 2.6654 2.1935 42 1 9.1246 2.3995 1.0379 43 1 8.1281 4.5770 1.6817 44 1 9.4558 4.8429 2.8372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054989196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:21 Heat of formation + Delta-G solvation = 67.476299 kcal Electronic energy + Delta-G solvation = -26508.414984 eV Core-core repulsion = 22658.143523 eV Total energy + Delta-G solvation = -3850.271461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.01672 -39.55715 -37.36676 -36.74759 -35.20332 -34.12133 -33.35411 -32.84988 -30.85313 -29.04880 -28.00716 -27.85439 -26.75415 -24.06189 -23.73850 -23.08618 -21.99364 -19.93320 -18.54013 -17.75722 -17.63710 -17.32376 -16.66574 -16.44943 -15.81940 -15.58778 -15.04961 -14.79320 -14.61786 -14.39113 -14.10182 -13.94099 -13.70295 -13.57486 -13.49002 -12.90170 -12.82077 -12.68216 -12.47548 -12.40358 -12.16860 -12.09478 -11.81789 -11.62326 -11.32712 -11.27401 -11.11280 -10.97236 -10.83164 -10.62147 -10.27341 -10.16754 -9.66193 -9.44973 -9.02938 -8.46044 -8.28114 -7.81894 -6.07534 -4.11648 1.35754 2.06069 2.69947 2.77945 2.98363 3.29216 3.30235 3.38711 3.42923 3.52387 3.92800 4.07425 4.23276 4.34292 4.44701 4.84586 4.89571 4.92938 4.96978 5.04243 5.05487 5.11795 5.19396 5.26808 5.27401 5.29197 5.38574 5.43965 5.50912 5.59478 5.64007 5.67638 5.80523 5.88865 6.05333 6.24619 6.78034 6.98452 7.02547 7.36309 7.44765 7.54357 7.89267 8.18744 8.22470 8.26723 8.86892 9.01967 9.54158 11.00644 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010547 B = 0.003280 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.040571 B = 8533.248322 C =10434.049994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.038 4.038 3 C -0.231 4.231 4 C 0.031 3.969 5 C 0.132 3.868 6 N -0.517 5.517 7 C 0.018 3.982 8 C 0.035 3.965 9 C 0.509 3.491 10 O -0.513 6.513 11 N -0.599 5.599 12 C 0.246 3.754 13 C -0.527 4.527 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.117 3.883 22 C -0.050 4.050 23 C 0.217 3.783 24 N -0.445 5.445 25 N -0.345 5.345 26 O 0.101 5.899 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.168 0.832 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.020 0.980 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.046 0.954 40 H 0.263 0.737 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.668 4.435 -14.825 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.253 4.253 4 C -0.129 4.129 5 C 0.003 3.997 6 N -0.242 5.242 7 C -0.129 4.129 8 C -0.096 4.096 9 C 0.295 3.705 10 O -0.387 6.387 11 N -0.332 5.332 12 C 0.127 3.873 13 C -0.565 4.565 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.009 4.009 22 C -0.092 4.092 23 C -0.101 4.101 24 N -0.123 5.123 25 N -0.047 5.047 26 O 0.032 5.968 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.186 0.814 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.122 0.878 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.148 3.343 -15.147 21.681 hybrid contribution 0.022 0.570 0.180 0.598 sum -15.126 3.913 -14.968 21.637 Atomic orbital electron populations 1.20318 0.84199 1.04623 1.03940 1.24477 0.96359 0.86357 1.02988 1.22377 0.91493 1.00855 1.10575 1.23279 0.96645 0.90002 1.02985 1.20344 0.91083 0.97427 0.90809 1.61498 1.01269 1.51153 1.10277 1.22618 0.96691 0.92942 1.00663 1.22141 0.90558 0.99439 0.97489 1.20098 0.81998 0.78802 0.89608 1.90668 1.57664 1.43276 1.47110 1.48218 1.12882 1.60605 1.11456 1.19336 0.94711 0.97148 0.76062 1.21465 1.35064 1.01775 0.98232 0.92295 1.24910 0.96252 0.97159 0.95667 1.69920 1.44909 1.35212 1.03328 0.86468 0.78918 0.83889 0.78325 1.19745 1.21028 1.20886 1.21298 0.98545 0.89356 0.91715 1.19910 0.97742 0.97918 0.93606 1.29114 0.93694 0.93314 0.94005 1.81212 1.10096 1.09430 1.11525 1.73885 0.96405 1.16447 1.17966 1.84866 1.11426 1.33207 1.67263 0.89940 0.89226 0.89347 0.81443 0.92453 0.88962 0.96129 0.91789 0.88604 0.88143 0.92270 0.94757 0.93597 0.92758 0.88680 0.90772 0.87776 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.45 36.01 0.38 0.03 16 2 C -0.04 -0.35 7.49 -35.30 -0.26 -0.62 16 3 C -0.23 -2.22 10.00 -39.39 -0.39 -2.61 16 4 C 0.03 0.38 6.02 -82.10 -0.49 -0.11 16 5 C 0.13 1.49 5.55 -4.98 -0.03 1.47 16 6 N -0.52 -7.32 4.49 -245.82 -1.10 -8.43 16 7 C 0.02 0.25 9.02 60.07 0.54 0.79 16 8 C 0.03 0.46 4.00 -4.97 -0.02 0.44 16 9 C 0.51 9.35 7.40 -10.98 -0.08 9.27 16 10 O -0.51 -11.90 13.89 5.56 0.08 -11.83 16 11 N -0.60 -10.80 2.46 -175.06 -0.43 -11.23 16 12 C 0.25 5.80 5.16 -5.19 -0.03 5.77 16 13 C -0.53 -14.17 9.39 -34.44 -0.32 -14.49 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 17 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.12 1.52 5.17 -4.04 -0.02 1.50 16 22 C -0.05 -0.50 6.03 -29.51 -0.18 -0.68 16 23 C 0.22 2.53 15.43 -20.76 -0.32 2.21 16 24 N -0.45 -6.39 18.54 42.15 0.78 -5.61 16 25 N -0.34 -5.02 12.07 33.42 0.40 -4.61 16 26 O 0.10 1.26 11.20 17.16 0.19 1.45 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.09 1.01 7.93 -51.93 -0.41 0.59 16 33 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.82 6.35 -51.92 -0.33 0.49 16 35 H 0.10 1.57 5.88 -51.93 -0.31 1.27 16 36 H 0.10 1.19 7.19 -51.93 -0.37 0.82 16 37 H 0.06 0.59 7.16 -51.93 -0.37 0.22 16 38 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 39 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 42 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 43 H 0.10 0.82 7.22 -51.93 -0.37 0.45 16 44 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 378.10 15.07 5.70 5.70 Total: -1.00 -35.56 378.10 -6.22 -41.78 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -6.23 Total: -3.43 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.33 Total: 4.58 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.39 Total: -54.80 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.27 Total: -10.38 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.56 -6.22 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054989196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.260 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds