Wall clock time and date at job start Tue Mar 31 2020 12:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35450 * 126.77982 * 2 1 4 4 C 1.41369 * 103.98586 * 180.09317 * 3 2 1 5 5 C 1.50704 * 126.80402 * 179.89126 * 4 3 2 6 6 N 1.46893 * 109.47295 * 94.70789 * 5 4 3 7 7 C 1.46901 * 111.00360 * 293.95434 * 6 5 4 8 8 C 1.46906 * 110.99932 * 170.00151 * 6 5 4 9 9 C 1.50703 * 109.47109 * 190.00029 * 8 6 5 10 10 O 1.21282 * 120.00082 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99978 * 180.02562 * 9 8 6 12 12 C 1.46496 * 119.99846 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.47056 * 90.00088 * 12 11 9 14 14 H 1.07998 * 120.00154 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99692 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00450 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99776 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46995 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47261 * 119.99729 * 17 15 13 20 20 H 1.48498 * 109.46859 * 239.99722 * 17 15 13 21 21 C 1.46497 * 119.99801 * 359.97438 * 11 9 8 22 22 C 1.53005 * 109.46961 * 90.00424 * 21 11 9 23 23 C 1.47204 * 109.46788 * 179.97438 * 22 21 11 24 24 N 9.36452 * 153.92170 * 180.34562 * 3 2 1 25 25 N 1.30180 * 106.39978 * 359.62665 * 4 3 2 26 26 O 1.20921 * 111.60064 * 0.23742 * 25 4 3 27 27 H 1.09000 * 109.47351 * 180.29964 * 1 2 3 28 28 H 1.08997 * 109.47232 * 300.30710 * 1 2 3 29 29 H 1.09007 * 109.47004 * 60.30300 * 1 2 3 30 30 H 1.08003 * 128.00234 * 359.95985 * 3 2 1 31 31 H 1.09004 * 109.46439 * 334.70775 * 5 4 3 32 32 H 1.08994 * 109.47235 * 214.71576 * 5 4 3 33 33 H 1.08995 * 109.47046 * 296.04847 * 7 6 5 34 34 H 1.09008 * 109.46903 * 56.04730 * 7 6 5 35 35 H 1.08999 * 109.47457 * 176.04446 * 7 6 5 36 36 H 1.08992 * 109.47459 * 309.99948 * 8 6 5 37 37 H 1.09004 * 109.47040 * 70.00098 * 8 6 5 38 38 H 1.09002 * 109.47248 * 209.99764 * 12 11 9 39 39 H 1.09000 * 109.47481 * 330.00016 * 12 11 9 40 40 H 0.96994 * 120.00664 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.47065 * 210.00008 * 21 11 9 42 42 H 1.09002 * 109.47641 * 330.00367 * 21 11 9 43 43 H 1.09000 * 109.46892 * 299.99690 * 22 21 11 44 44 H 1.08998 * 109.46794 * 60.00269 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5372 -0.0022 5 6 4.9211 1.2998 -0.0055 6 7 5.4038 1.4507 1.3737 7 6 4.5002 2.3035 2.1574 8 6 6.7755 1.9760 1.3968 9 6 7.3239 1.8872 2.7978 10 8 6.6392 1.4316 3.6892 11 7 8.5747 2.3149 3.0602 12 6 9.1079 2.2280 4.4219 13 6 9.7937 0.8992 4.6090 14 1 9.8285 0.1901 3.7951 15 6 10.3758 0.5883 5.8196 16 7 10.3330 1.4514 6.8108 17 14 11.2253 -1.0592 6.0517 18 1 11.1349 -1.8442 4.7944 19 1 12.6527 -0.8361 6.3950 20 1 10.5631 -1.8070 7.1505 21 6 9.4014 2.8657 1.9835 22 6 9.1788 4.3767 1.8917 23 6 10.0100 4.9302 0.8102 24 7 10.6512 5.3570 -0.0248 25 7 3.4763 -0.7565 0.0048 26 8 2.3095 -1.0737 0.0062 27 1 -0.3634 -1.0276 0.0054 28 1 -0.3633 0.5186 0.8872 29 1 -0.3633 0.5092 -0.8928 30 1 2.0345 2.1270 -0.0006 31 1 4.7632 2.2848 -0.4450 32 1 5.6608 0.7547 -0.5918 33 1 4.4962 3.3098 1.7388 34 1 3.4915 1.8918 2.1235 35 1 4.8424 2.3416 3.1916 36 1 7.4008 1.3891 0.7241 37 1 6.7714 3.0170 1.0736 38 1 9.8250 3.0329 4.5834 39 1 8.2916 2.3196 5.1384 40 1 10.7429 1.2329 7.6624 41 1 10.4521 2.6654 2.1935 42 1 9.1246 2.3995 1.0379 43 1 8.1281 4.5770 1.6817 44 1 9.4558 4.8429 2.8372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054989196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:19 Heat of formation + Delta-G solvation = 42.723186 kcal Electronic energy + Delta-G solvation = -26509.488360 eV Core-core repulsion = 22658.143523 eV Total energy + Delta-G solvation = -3851.344837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.85153 -40.90553 -38.41134 -37.83207 -36.59279 -34.99441 -34.77143 -34.06554 -32.13747 -30.37828 -28.82155 -28.61809 -28.26657 -25.32423 -25.11465 -24.02317 -23.29419 -20.72424 -19.89289 -18.79802 -18.62850 -18.32193 -18.16505 -17.85025 -17.14924 -16.63509 -16.42597 -15.93172 -15.66539 -15.61782 -15.37948 -14.81731 -14.63359 -14.46770 -14.29877 -13.98208 -13.90323 -13.63765 -13.54114 -13.50646 -13.30769 -13.17015 -13.01117 -12.87811 -12.73633 -12.63769 -12.51234 -12.47133 -12.16142 -11.88626 -11.80635 -11.62479 -11.12049 -10.58821 -10.48329 -10.17110 -9.45965 -9.20343 -8.17987 -6.29484 0.61261 1.25490 1.37504 1.40883 1.51018 1.71186 1.86032 1.94093 2.26913 2.34663 2.43988 3.00742 3.13297 3.21956 3.28615 3.62942 3.80149 4.05464 4.13495 4.18581 4.22076 4.29463 4.35581 4.41172 4.52741 4.58763 4.65881 4.69896 4.71026 4.78091 4.86408 4.96604 5.07255 5.07805 5.12578 5.19204 5.31994 5.35731 5.63429 5.87218 5.97155 6.06241 6.14803 6.62607 6.78509 6.85350 7.36440 7.42892 7.59899 8.88634 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010547 B = 0.003280 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.040571 B = 8533.248322 C =10434.049994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.036 4.036 3 C -0.235 4.235 4 C 0.017 3.983 5 C 0.135 3.865 6 N -0.551 5.551 7 C 0.027 3.973 8 C 0.047 3.953 9 C 0.502 3.498 10 O -0.572 6.572 11 N -0.599 5.599 12 C 0.262 3.738 13 C -0.537 4.537 14 H 0.050 0.950 15 C 0.011 3.989 16 N -0.925 5.925 17 Si 0.955 3.045 18 H -0.271 1.271 19 H -0.271 1.271 20 H -0.286 1.286 21 C 0.113 3.887 22 C -0.037 4.037 23 C 0.246 3.754 24 N -0.490 5.490 25 N -0.394 5.394 26 O 0.079 5.921 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.197 0.803 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.035 0.965 39 H 0.003 0.997 40 H 0.265 0.735 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.138 0.862 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.652 5.516 -17.074 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.099 4.099 3 C -0.257 4.257 4 C -0.142 4.142 5 C 0.007 3.993 6 N -0.277 5.277 7 C -0.120 4.120 8 C -0.083 4.083 9 C 0.290 3.710 10 O -0.451 6.451 11 N -0.331 5.331 12 C 0.141 3.859 13 C -0.576 4.576 14 H 0.068 0.932 15 C -0.188 4.188 16 N -0.566 5.566 17 Si 0.781 3.219 18 H -0.195 1.195 19 H -0.197 1.197 20 H -0.212 1.212 21 C -0.012 4.012 22 C -0.078 4.078 23 C -0.071 4.071 24 N -0.168 5.168 25 N -0.100 5.100 26 O 0.014 5.986 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.214 0.786 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.053 0.947 39 H 0.021 0.979 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.124 0.876 43 H 0.156 0.844 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.131 4.440 -17.450 24.175 hybrid contribution 0.245 0.229 0.890 0.952 sum -15.886 4.669 -16.560 23.418 Atomic orbital electron populations 1.20557 0.81023 1.05652 1.05682 1.25339 0.98047 0.85484 1.01049 1.22736 0.90234 1.02266 1.10417 1.23724 0.98253 0.89776 1.02439 1.20429 0.90627 0.99023 0.89189 1.61332 1.01743 1.52354 1.12227 1.22441 0.96246 0.94638 0.98710 1.22097 0.90274 1.02492 0.93456 1.21115 0.81316 0.77182 0.91380 1.90651 1.59183 1.45792 1.49472 1.48084 1.13584 1.60886 1.10552 1.18762 0.92816 0.95689 0.78660 1.21793 1.34886 1.02954 0.97999 0.93164 1.25689 0.97129 1.00317 0.95622 1.70014 1.45927 1.36863 1.03752 0.85555 0.78417 0.79998 0.77975 1.19503 1.19666 1.21186 1.21524 0.97109 0.91422 0.91150 1.19830 0.99337 0.95390 0.93202 1.29146 0.92595 0.92160 0.93187 1.81260 1.11531 1.10860 1.13139 1.73873 0.97616 1.18061 1.20424 1.84802 1.11378 1.34591 1.67799 0.89350 0.87771 0.86997 0.78578 0.88925 0.88867 0.92885 0.91878 0.92477 0.86300 0.87722 0.94664 0.97884 0.92603 0.89970 0.87562 0.84447 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.45 71.24 0.74 0.26 16 2 C -0.04 -0.61 7.49 25.04 0.19 -0.42 16 3 C -0.23 -3.98 10.00 22.40 0.22 -3.76 16 4 C 0.02 0.40 6.02 43.58 0.26 0.66 16 5 C 0.13 2.69 5.55 85.56 0.48 3.16 16 6 N -0.55 -14.54 4.49 -931.64 -4.18 -18.73 16 7 C 0.03 0.69 9.02 127.69 1.15 1.84 16 8 C 0.05 1.10 4.00 85.56 0.34 1.44 16 9 C 0.50 18.14 7.40 87.66 0.65 18.79 16 10 O -0.57 -27.54 13.89 -3.04 -0.04 -27.58 16 11 N -0.60 -21.27 2.46 -826.15 -2.03 -23.30 16 12 C 0.26 12.67 5.16 85.64 0.44 13.11 16 13 C -0.54 -29.53 9.39 25.60 0.24 -29.29 16 14 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 15 C 0.01 0.64 5.46 84.66 0.46 1.11 16 16 N -0.93 -54.23 13.29 21.45 0.28 -53.95 16 17 Si 0.95 44.75 29.54 68.60 2.03 46.77 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 C 0.11 2.65 5.17 86.38 0.45 3.10 16 22 C -0.04 -0.61 6.03 28.79 0.17 -0.44 16 23 C 0.25 5.04 15.43 89.44 1.38 6.42 16 24 N -0.49 -13.05 18.54 20.01 0.37 -12.68 16 25 N -0.39 -11.51 12.07 -49.56 -0.60 -12.10 16 26 O 0.08 1.99 11.20 71.59 0.80 2.79 16 27 H 0.09 0.51 8.14 -2.39 -0.02 0.50 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.20 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.09 1.18 8.12 -2.39 -0.02 1.16 16 32 H 0.09 1.80 7.93 -2.39 -0.02 1.79 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.54 6.35 -2.38 -0.02 1.53 16 35 H 0.06 1.90 5.88 -2.39 -0.01 1.89 16 36 H 0.12 2.37 7.19 -2.39 -0.02 2.35 16 37 H 0.11 1.51 7.16 -2.38 -0.02 1.49 16 38 H 0.04 1.68 8.07 -2.39 -0.02 1.66 16 39 H 0.00 0.17 7.42 -2.39 -0.02 0.15 16 40 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.08 2.18 8.07 -2.39 -0.02 2.16 16 42 H 0.11 1.85 6.44 -2.39 -0.02 1.84 16 43 H 0.14 1.48 7.22 -2.39 -0.02 1.46 16 44 H 0.12 2.08 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -83.19 378.10 4.83 -78.36 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.02 Total: 4.42 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 7.18 Total: 15.99 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -6.16 Total: -120.75 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: 0.76 Total: -24.79 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -83.19 4.83 -78.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054989196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.086 kcal (2) G-P(sol) polarization free energy of solvation -83.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds