Wall clock time and date at job start Tue Mar 31 2020 14:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29955 * 126.28425 * 2 1 4 4 O 1.21294 * 110.24832 * 179.72809 * 3 2 1 5 5 C 1.33644 * 109.81491 * 0.46465 * 4 3 2 6 6 C 1.50697 * 126.55419 * 179.80262 * 5 4 3 7 7 H 1.09000 * 109.87666 * 164.25466 * 6 5 4 8 8 C 1.54330 * 109.88497 * 285.42791 * 6 5 4 9 9 C 1.55150 * 102.94097 * 141.61098 * 8 6 5 10 10 C 1.55134 * 101.48667 * 324.33220 * 9 8 6 11 11 N 1.47020 * 109.88458 * 43.23785 * 6 5 4 12 12 C 1.34782 * 125.64625 * 61.60377 * 11 6 5 13 13 O 1.21582 * 120.00223 * 354.56892 * 12 11 6 14 14 N 1.34775 * 119.99669 * 174.85125 * 12 11 6 15 15 C 1.46503 * 120.00137 * 185.03178 * 14 12 11 16 16 C 1.52998 * 109.47262 * 184.85399 * 15 14 12 17 17 C 1.50691 * 115.55056 * 305.40080 * 16 15 14 18 18 H 1.08000 * 119.99893 * 144.74657 * 17 16 15 19 19 C 1.37877 * 120.00047 * 324.74351 * 17 16 15 20 20 N 1.31519 * 120.00232 * 2.89199 * 19 17 16 21 21 Si 1.86806 * 120.00133 * 182.89372 * 19 17 16 22 22 H 1.48501 * 109.46772 * 59.99996 * 21 19 17 23 23 H 1.48497 * 109.47356 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46849 * 300.00053 * 21 19 17 25 25 C 1.53001 * 117.49541 * 159.73106 * 16 15 14 26 26 C 1.52998 * 117.49575 * 91.07206 * 16 15 14 27 27 N 1.31132 * 106.89450 * 359.54171 * 5 4 3 28 28 H 1.09002 * 109.47555 * 269.97251 * 1 2 3 29 29 H 1.09000 * 109.47346 * 29.97547 * 1 2 3 30 30 H 1.09002 * 109.47200 * 149.97822 * 1 2 3 31 31 H 1.08991 * 110.71799 * 259.97789 * 8 6 5 32 32 H 1.09002 * 110.71264 * 23.24728 * 8 6 5 33 33 H 1.08994 * 111.00694 * 82.57700 * 9 8 6 34 34 H 1.09004 * 111.00005 * 206.42783 * 9 8 6 35 35 H 1.08996 * 110.49941 * 278.45167 * 10 9 8 36 36 H 1.09005 * 110.33595 * 156.06362 * 10 9 8 37 37 H 0.97004 * 120.00314 * 5.02266 * 14 12 11 38 38 H 1.09003 * 109.46544 * 304.85291 * 15 14 12 39 39 H 1.08996 * 109.46874 * 64.84983 * 15 14 12 40 40 H 0.96994 * 119.99837 * 185.00276 * 20 19 17 41 41 H 1.09000 * 117.49819 * 359.97438 * 25 16 15 42 42 H 1.09000 * 117.50049 * 145.02160 * 25 16 15 43 43 H 1.09005 * 117.49630 * 214.97612 * 26 16 15 44 44 H 1.09003 * 117.50512 * 359.97398 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0476 0.0000 4 8 3.4417 0.7125 0.0054 5 6 3.5299 -0.6210 -0.0007 6 6 4.7969 -1.4368 -0.0013 7 1 4.5738 -2.4682 0.2714 8 6 5.4510 -1.3897 -1.3983 9 6 6.9656 -1.3145 -1.0706 10 6 6.9614 -0.4393 0.2103 11 7 5.7601 -0.8651 0.9511 12 6 5.5733 -0.7449 2.2805 13 8 4.4998 -1.0349 2.7722 14 7 6.5747 -0.2978 3.0639 15 6 6.4100 -0.2711 4.5194 16 6 7.6341 0.3869 5.1593 17 6 8.9641 -0.2186 4.7915 18 1 9.8335 0.4130 4.6834 19 6 9.0711 -1.5788 4.5932 20 7 8.0017 -2.3406 4.6689 21 14 10.7351 -2.3398 4.2169 22 1 11.6695 -2.0661 5.3383 23 1 10.5817 -3.8071 4.0481 24 1 11.2772 -1.7510 2.9660 25 6 7.4779 0.9415 6.5766 26 6 7.5850 1.8990 5.3871 27 7 2.3030 -1.0840 -0.0004 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 5.2227 -2.2943 -1.9617 32 1 5.1301 -0.5026 -1.9445 33 1 7.3714 -2.3058 -0.8691 34 1 7.5154 -0.8249 -1.8744 35 1 6.8925 0.6170 -0.0494 36 1 7.8581 -0.6278 0.8009 37 1 7.4045 0.0063 2.6641 38 1 5.5164 0.2992 4.7735 39 1 6.3087 -1.2903 4.8923 40 1 8.0871 -3.3044 4.6017 41 1 6.5030 0.8379 7.0531 42 1 8.3374 0.8688 7.2431 43 1 8.5149 2.4559 5.2715 44 1 6.6808 2.4252 5.0808 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558020644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:20 Heat of formation + Delta-G solvation = 74.828916 kcal Electronic energy + Delta-G solvation = -28035.040160 eV Core-core repulsion = 24185.087532 eV Total energy + Delta-G solvation = -3849.952628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.38483 -39.90081 -37.62642 -36.48668 -35.89242 -33.41912 -32.73346 -32.20844 -31.24954 -29.49045 -28.74110 -26.04698 -25.32775 -24.03187 -23.19512 -21.99804 -21.26824 -20.98251 -19.28339 -19.17161 -17.87820 -17.84673 -16.97233 -16.62849 -16.18690 -15.38004 -14.85388 -14.36030 -14.26245 -14.09480 -13.93609 -13.61001 -13.53001 -13.15289 -12.95926 -12.90760 -12.60897 -12.39944 -12.11796 -11.97203 -11.73386 -11.42767 -11.32060 -11.17572 -11.11312 -11.01547 -10.86748 -10.80414 -10.53266 -10.27783 -9.83863 -9.72430 -9.37949 -8.99634 -8.87826 -8.60576 -8.31294 -7.75433 -6.02473 -4.23088 1.29209 2.33818 2.86026 3.02884 3.18377 3.26919 3.28167 3.71930 3.97056 4.18475 4.25580 4.30604 4.49616 4.72270 4.80051 5.00635 5.10450 5.14178 5.30829 5.34790 5.41957 5.46828 5.53431 5.57294 5.69018 5.73750 5.81784 5.95363 6.02271 6.04536 6.13390 6.30553 6.38091 6.53685 6.63116 6.73611 6.88675 7.05258 7.25523 7.50157 7.59956 7.70329 7.95886 8.29413 8.32597 8.70549 8.86598 9.36762 9.40152 10.86201 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.004215 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.297264 B = 6641.980177 C = 7700.834810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.164 3.836 3 N -0.392 5.392 4 O 0.082 5.918 5 C 0.195 3.805 6 C 0.252 3.748 7 H 0.119 0.881 8 C -0.123 4.123 9 C -0.127 4.127 10 C 0.096 3.904 11 N -0.638 5.638 12 C 0.718 3.282 13 O -0.598 6.598 14 N -0.691 5.691 15 C 0.182 3.818 16 C 0.036 3.964 17 C -0.497 4.497 18 H 0.060 0.940 19 C 0.075 3.925 20 N -0.866 5.866 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.198 4.198 26 C -0.211 4.211 27 N -0.479 5.479 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.397 0.603 38 H 0.020 0.980 39 H 0.112 0.888 40 H 0.263 0.737 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.152 1.613 -13.973 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.109 4.109 3 N -0.101 5.101 4 O 0.025 5.975 5 C -0.027 4.027 6 C 0.143 3.857 7 H 0.136 0.864 8 C -0.162 4.162 9 C -0.166 4.166 10 C -0.027 4.027 11 N -0.378 5.378 12 C 0.420 3.580 13 O -0.478 6.478 14 N -0.341 5.341 15 C 0.059 3.941 16 C 0.036 3.964 17 C -0.534 4.534 18 H 0.079 0.921 19 C -0.130 4.130 20 N -0.502 5.502 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.236 4.236 26 C -0.249 4.249 27 N -0.213 5.213 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.232 0.768 38 H 0.038 0.962 39 H 0.129 0.871 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.633 1.710 -13.503 15.141 hybrid contribution 1.420 -0.239 -0.016 1.440 sum -5.214 1.471 -13.519 14.564 Atomic orbital electron populations 1.20085 0.83227 1.04198 1.04237 1.25832 1.00443 0.83743 1.00841 1.74569 0.89564 1.24146 1.21820 1.85249 1.22085 1.24783 1.65395 1.29208 0.97045 0.82166 0.94267 1.19826 0.80431 0.94615 0.90809 0.86366 1.22738 0.95925 1.04132 0.93360 1.22830 0.94949 1.01413 0.97358 1.22396 0.88832 0.98462 0.92965 1.47679 1.17705 1.67355 1.05110 1.15524 0.84828 0.78909 0.78777 1.90882 1.25784 1.58473 1.72613 1.44831 1.15874 1.65878 1.07520 1.21002 0.93370 1.03165 0.76566 1.19222 0.95194 0.88785 0.93235 1.20480 0.92767 0.92214 1.47972 0.92147 1.25000 0.96418 0.97221 0.94316 1.69882 1.27166 1.04909 1.48286 0.86650 0.84171 0.78182 0.78959 1.20260 1.21229 1.20117 1.22942 1.00171 1.07383 0.93127 1.22950 1.00262 0.95593 1.06077 1.71813 0.99555 1.29379 1.20550 0.89440 0.89790 0.89214 0.88633 0.90019 0.89736 0.89248 0.91249 0.89468 0.76849 0.96210 0.87092 0.92639 0.91473 0.90175 0.90638 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 36.00 0.38 -0.25 16 2 C 0.16 2.59 8.22 -156.37 -1.28 1.31 16 3 N -0.39 -6.76 12.16 30.90 0.38 -6.39 16 4 O 0.08 1.43 11.31 18.10 0.20 1.63 16 5 C 0.20 3.22 6.33 -13.06 -0.08 3.13 16 6 C 0.25 3.56 3.43 -68.10 -0.23 3.33 16 7 H 0.12 1.72 8.14 -51.93 -0.42 1.30 16 8 C -0.12 -1.13 6.46 -24.90 -0.16 -1.29 16 9 C -0.13 -1.11 7.10 -24.46 -0.17 -1.28 16 10 C 0.10 1.19 6.66 -2.41 -0.02 1.17 16 11 N -0.64 -10.48 3.05 -169.87 -0.52 -11.00 16 12 C 0.72 15.41 8.30 -86.91 -0.72 14.69 16 13 O -0.60 -15.15 16.04 5.29 0.08 -15.07 16 14 N -0.69 -15.01 5.12 -65.22 -0.33 -15.34 16 15 C 0.18 4.38 4.63 -4.04 -0.02 4.36 16 16 C 0.04 0.85 2.06 -155.67 -0.32 0.53 16 17 C -0.50 -12.28 8.31 -34.44 -0.29 -12.57 16 18 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 19 C 0.07 1.84 5.31 -17.82 -0.09 1.75 16 20 N -0.87 -22.40 10.17 55.43 0.56 -21.84 16 21 Si 0.89 19.30 29.54 -169.99 -5.02 14.28 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 23 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 C -0.20 -4.33 9.96 -26.69 -0.27 -4.60 16 26 C -0.21 -4.44 9.93 -26.69 -0.26 -4.71 16 27 N -0.48 -8.12 11.55 -9.87 -0.11 -8.24 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.14 7.18 -51.93 -0.37 0.77 16 37 H 0.40 8.15 6.38 -40.82 -0.26 7.88 16 38 H 0.02 0.48 8.05 -51.93 -0.42 0.07 16 39 H 0.11 3.01 5.90 -51.93 -0.31 2.71 16 40 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 43 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -31.61 366.64 -9.16 -40.78 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.38 Total: 10.08 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -3.55 Total: 5.57 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: -0.03 Total: -62.80 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.29 Total: -13.43 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.61 -9.16 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558020644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.607 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds