Wall clock time and date at job start Tue Mar 31 2020 14:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29955 * 126.28425 * 2 1 4 4 O 1.21294 * 110.24832 * 179.72809 * 3 2 1 5 5 C 1.33644 * 109.81491 * 0.46465 * 4 3 2 6 6 C 1.50697 * 126.55419 * 179.80262 * 5 4 3 7 7 H 1.09000 * 109.87666 * 164.25466 * 6 5 4 8 8 C 1.54330 * 109.88497 * 285.42791 * 6 5 4 9 9 C 1.55150 * 102.94097 * 141.61098 * 8 6 5 10 10 C 1.55134 * 101.48667 * 324.33220 * 9 8 6 11 11 N 1.47020 * 109.88458 * 43.23785 * 6 5 4 12 12 C 1.34782 * 125.64625 * 61.60377 * 11 6 5 13 13 O 1.21582 * 120.00223 * 354.56892 * 12 11 6 14 14 N 1.34775 * 119.99669 * 174.85125 * 12 11 6 15 15 C 1.46503 * 120.00137 * 185.03178 * 14 12 11 16 16 C 1.52998 * 109.47262 * 184.85399 * 15 14 12 17 17 C 1.50691 * 115.55056 * 305.40080 * 16 15 14 18 18 H 1.08000 * 119.99893 * 144.74657 * 17 16 15 19 19 C 1.37877 * 120.00047 * 324.74351 * 17 16 15 20 20 N 1.31519 * 120.00232 * 2.89199 * 19 17 16 21 21 Si 1.86806 * 120.00133 * 182.89372 * 19 17 16 22 22 H 1.48501 * 109.46772 * 59.99996 * 21 19 17 23 23 H 1.48497 * 109.47356 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46849 * 300.00053 * 21 19 17 25 25 C 1.53001 * 117.49541 * 159.73106 * 16 15 14 26 26 C 1.52998 * 117.49575 * 91.07206 * 16 15 14 27 27 N 1.31132 * 106.89450 * 359.54171 * 5 4 3 28 28 H 1.09002 * 109.47555 * 269.97251 * 1 2 3 29 29 H 1.09000 * 109.47346 * 29.97547 * 1 2 3 30 30 H 1.09002 * 109.47200 * 149.97822 * 1 2 3 31 31 H 1.08991 * 110.71799 * 259.97789 * 8 6 5 32 32 H 1.09002 * 110.71264 * 23.24728 * 8 6 5 33 33 H 1.08994 * 111.00694 * 82.57700 * 9 8 6 34 34 H 1.09004 * 111.00005 * 206.42783 * 9 8 6 35 35 H 1.08996 * 110.49941 * 278.45167 * 10 9 8 36 36 H 1.09005 * 110.33595 * 156.06362 * 10 9 8 37 37 H 0.97004 * 120.00314 * 5.02266 * 14 12 11 38 38 H 1.09003 * 109.46544 * 304.85291 * 15 14 12 39 39 H 1.08996 * 109.46874 * 64.84983 * 15 14 12 40 40 H 0.96994 * 119.99837 * 185.00276 * 20 19 17 41 41 H 1.09000 * 117.49819 * 359.97438 * 25 16 15 42 42 H 1.09000 * 117.50049 * 145.02160 * 25 16 15 43 43 H 1.09005 * 117.49630 * 214.97612 * 26 16 15 44 44 H 1.09003 * 117.50512 * 359.97398 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0476 0.0000 4 8 3.4417 0.7125 0.0054 5 6 3.5299 -0.6210 -0.0007 6 6 4.7969 -1.4368 -0.0013 7 1 4.5738 -2.4682 0.2714 8 6 5.4510 -1.3897 -1.3983 9 6 6.9656 -1.3145 -1.0706 10 6 6.9614 -0.4393 0.2103 11 7 5.7601 -0.8651 0.9511 12 6 5.5733 -0.7449 2.2805 13 8 4.4998 -1.0349 2.7722 14 7 6.5747 -0.2978 3.0639 15 6 6.4100 -0.2711 4.5194 16 6 7.6341 0.3869 5.1593 17 6 8.9641 -0.2186 4.7915 18 1 9.8335 0.4130 4.6834 19 6 9.0711 -1.5788 4.5932 20 7 8.0017 -2.3406 4.6689 21 14 10.7351 -2.3398 4.2169 22 1 11.6695 -2.0661 5.3383 23 1 10.5817 -3.8071 4.0481 24 1 11.2772 -1.7510 2.9660 25 6 7.4779 0.9415 6.5766 26 6 7.5850 1.8990 5.3871 27 7 2.3030 -1.0840 -0.0004 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 5.2227 -2.2943 -1.9617 32 1 5.1301 -0.5026 -1.9445 33 1 7.3714 -2.3058 -0.8691 34 1 7.5154 -0.8249 -1.8744 35 1 6.8925 0.6170 -0.0494 36 1 7.8581 -0.6278 0.8009 37 1 7.4045 0.0063 2.6641 38 1 5.5164 0.2992 4.7735 39 1 6.3087 -1.2903 4.8923 40 1 8.0871 -3.3044 4.6017 41 1 6.5030 0.8379 7.0531 42 1 8.3374 0.8688 7.2431 43 1 8.5149 2.4559 5.2715 44 1 6.6808 2.4252 5.0808 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558020644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:19 Heat of formation + Delta-G solvation = 53.717561 kcal Electronic energy + Delta-G solvation = -28035.955617 eV Core-core repulsion = 24185.087532 eV Total energy + Delta-G solvation = -3850.868085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.63023 -41.31883 -39.12484 -38.17439 -37.11524 -35.01202 -34.19695 -33.97541 -32.44205 -30.48941 -29.82346 -27.84290 -27.12555 -25.28152 -24.41348 -23.14606 -22.94223 -22.06133 -21.12640 -20.60277 -19.38436 -19.13174 -18.26512 -17.95502 -17.78011 -16.90743 -16.66896 -15.95138 -15.73069 -15.38193 -15.10499 -14.96292 -14.55038 -14.51343 -14.32324 -14.02407 -13.87131 -13.72808 -13.42395 -13.27145 -13.14919 -12.94516 -12.86608 -12.59103 -12.30697 -12.28196 -12.17115 -12.15994 -12.05395 -11.74777 -11.55702 -11.23585 -10.95897 -10.84775 -10.69579 -10.18511 -10.06314 -9.45123 -7.91421 -6.18194 0.03536 1.11595 1.47165 1.51251 1.55168 1.57603 1.76866 2.23906 2.45314 2.69458 2.99446 3.06146 3.28125 3.49589 3.62058 3.67023 3.82472 4.11823 4.20148 4.25648 4.43684 4.51854 4.51889 4.52370 4.60836 4.72883 4.76670 4.78015 4.81063 4.87498 4.89119 4.93680 5.03496 5.06267 5.11329 5.22083 5.31159 5.34023 5.51082 5.60189 5.88538 5.96276 6.08306 6.39055 6.82641 7.07288 7.17642 7.47249 7.69245 8.95191 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.004215 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.297264 B = 6641.980177 C = 7700.834810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.162 3.838 3 N -0.414 5.414 4 O 0.064 5.936 5 C 0.194 3.806 6 C 0.242 3.758 7 H 0.110 0.890 8 C -0.108 4.108 9 C -0.112 4.112 10 C 0.085 3.915 11 N -0.636 5.636 12 C 0.712 3.288 13 O -0.646 6.646 14 N -0.688 5.688 15 C 0.196 3.804 16 C 0.012 3.988 17 C -0.506 4.506 18 H 0.061 0.939 19 C 0.038 3.962 20 N -0.891 5.891 21 Si 0.952 3.048 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.260 1.260 25 C -0.199 4.199 26 C -0.188 4.188 27 N -0.501 5.501 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.402 0.598 38 H 0.005 0.995 39 H 0.078 0.922 40 H 0.257 0.743 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.135 1.945 -16.209 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.111 4.111 3 N -0.127 5.127 4 O 0.011 5.989 5 C -0.028 4.028 6 C 0.134 3.866 7 H 0.127 0.873 8 C -0.146 4.146 9 C -0.150 4.150 10 C -0.036 4.036 11 N -0.375 5.375 12 C 0.414 3.586 13 O -0.529 6.529 14 N -0.339 5.339 15 C 0.072 3.928 16 C 0.011 3.989 17 C -0.543 4.543 18 H 0.079 0.921 19 C -0.163 4.163 20 N -0.527 5.527 21 Si 0.778 3.222 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.185 1.185 25 C -0.238 4.238 26 C -0.226 4.226 27 N -0.236 5.236 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.143 0.857 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.144 0.856 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.238 0.762 38 H 0.023 0.977 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.558 2.063 -15.796 16.872 hybrid contribution 1.046 -0.333 0.710 1.307 sum -4.512 1.730 -15.086 15.841 Atomic orbital electron populations 1.20352 0.80001 1.06204 1.05174 1.26738 1.02331 0.83017 0.99027 1.74548 0.89709 1.24976 1.23478 1.85205 1.22422 1.25173 1.66074 1.29667 0.97735 0.82094 0.93326 1.20295 0.79772 0.93445 0.93069 0.87270 1.22816 0.95514 1.06127 0.90192 1.22851 0.94846 1.01133 0.96131 1.22743 0.86572 1.00203 0.94087 1.47661 1.19637 1.66353 1.03826 1.15717 0.83963 0.78482 0.80423 1.90833 1.27465 1.60306 1.74277 1.44650 1.16234 1.66212 1.06768 1.20621 0.93230 1.00906 0.78046 1.19266 0.94546 0.90623 0.94459 1.20649 0.93095 0.92522 1.48007 0.92120 1.25598 0.99094 0.97509 0.94132 1.70070 1.28796 1.04584 1.49299 0.85720 0.80465 0.76944 0.79105 1.20628 1.21845 1.18493 1.22972 1.00515 1.07450 0.92835 1.22927 1.01171 0.94143 1.04325 1.71841 1.00073 1.30124 1.21523 0.88833 0.87726 0.87280 0.85742 0.88972 0.89400 0.85636 0.89857 0.90452 0.76198 0.97700 0.90465 0.93296 0.91027 0.90031 0.89408 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.18 10.51 71.23 0.75 -0.44 16 2 C 0.16 5.05 8.22 138.46 1.14 6.19 16 3 N -0.41 -14.33 12.16 -60.32 -0.73 -15.07 16 4 O 0.06 2.26 11.31 74.83 0.85 3.10 16 5 C 0.19 6.38 6.33 88.38 0.56 6.94 16 6 C 0.24 6.70 3.43 44.60 0.15 6.86 16 7 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 8 C -0.11 -1.67 6.46 31.78 0.21 -1.46 16 9 C -0.11 -1.56 7.10 32.06 0.23 -1.33 16 10 C 0.09 1.96 6.66 86.93 0.58 2.54 16 11 N -0.64 -20.85 3.05 -809.59 -2.47 -23.32 16 12 C 0.71 31.51 8.30 179.05 1.49 33.00 16 13 O -0.65 -34.18 16.04 -3.97 -0.06 -34.25 16 14 N -0.69 -30.65 5.12 -478.54 -2.45 -33.10 16 15 C 0.20 9.77 4.63 86.38 0.40 10.17 16 16 C 0.01 0.56 2.06 -52.93 -0.11 0.45 16 17 C -0.51 -24.81 8.31 25.60 0.21 -24.60 16 18 H 0.06 2.93 7.81 -2.91 -0.02 2.90 16 19 C 0.04 1.89 5.31 84.65 0.45 2.34 16 20 N -0.89 -47.01 10.17 21.45 0.22 -46.79 16 21 Si 0.95 39.20 29.54 68.60 2.03 41.23 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 25 C -0.20 -8.68 9.96 30.62 0.30 -8.37 16 26 C -0.19 -7.72 9.93 30.62 0.30 -7.42 16 27 N -0.50 -17.00 11.55 -303.20 -3.50 -20.51 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.30 7.84 -2.39 -0.02 1.28 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.94 7.18 -2.38 -0.02 1.93 16 37 H 0.40 16.70 6.38 -92.71 -0.59 16.11 16 38 H 0.00 0.25 8.05 -2.39 -0.02 0.23 16 39 H 0.08 4.41 5.90 -2.39 -0.01 4.39 16 40 H 0.26 13.39 8.32 -92.71 -0.77 12.62 16 41 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 43 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 44 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -71.01 366.64 0.96 -70.05 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.43 Total: 33.80 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: 6.66 Total: 24.85 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -8.94 Total: -138.79 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: 0.78 Total: -31.14 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -71.01 0.96 -70.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558020644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.765 kcal (2) G-P(sol) polarization free energy of solvation -71.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds