Wall clock time and date at job start Tue Mar 31 2020 14:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29948 * 126.28503 * 2 1 4 4 O 1.21301 * 110.25232 * 180.02562 * 3 2 1 5 5 C 1.33649 * 109.81143 * 0.02562 * 4 3 2 6 6 C 1.50692 * 126.55252 * 179.97438 * 5 4 3 7 7 H 1.09011 * 109.99730 * 195.38418 * 6 5 4 8 8 C 1.54332 * 109.99467 * 74.34432 * 6 5 4 9 9 C 1.55147 * 103.02326 * 218.66376 * 8 6 5 10 10 C 1.54911 * 101.58069 * 35.30613 * 9 8 6 11 11 N 1.47019 * 109.88292 * 316.47537 * 6 5 4 12 12 C 1.34777 * 125.64999 * 298.39507 * 11 6 5 13 13 O 1.21585 * 120.00239 * 4.64352 * 12 11 6 14 14 N 1.34776 * 120.00006 * 184.64002 * 12 11 6 15 15 C 1.46503 * 120.00267 * 185.03745 * 14 12 11 16 16 C 1.52995 * 109.47503 * 175.01694 * 15 14 12 17 17 C 1.50699 * 115.55211 * 65.05507 * 16 15 14 18 18 H 1.08006 * 119.99779 * 268.90261 * 17 16 15 19 19 C 1.37874 * 120.00112 * 88.62310 * 17 16 15 20 20 N 1.31510 * 119.99697 * 184.66909 * 19 17 16 21 21 Si 1.86800 * 119.99985 * 4.67664 * 19 17 16 22 22 H 1.48496 * 109.47385 * 94.77505 * 21 19 17 23 23 H 1.48498 * 109.47012 * 214.77737 * 21 19 17 24 24 H 1.48509 * 109.46997 * 334.77506 * 21 19 17 25 25 C 1.52996 * 117.51789 * 210.75731 * 16 15 14 26 26 C 1.52998 * 60.00262 * 107.47659 * 25 16 15 27 27 N 1.31130 * 106.89515 * 0.22281 * 5 4 3 28 28 H 1.09004 * 109.47337 * 89.97184 * 1 2 3 29 29 H 1.09003 * 109.47183 * 209.97095 * 1 2 3 30 30 H 1.09003 * 109.47426 * 329.97256 * 1 2 3 31 31 H 1.09005 * 110.84879 * 100.19023 * 8 6 5 32 32 H 1.09004 * 110.66632 * 337.05197 * 8 6 5 33 33 H 1.09002 * 111.01000 * 277.22949 * 9 8 6 34 34 H 1.08998 * 111.03897 * 153.39037 * 9 8 6 35 35 H 1.08997 * 110.36673 * 204.15022 * 10 9 8 36 36 H 1.09000 * 110.36582 * 81.82837 * 10 9 8 37 37 H 0.96997 * 120.00324 * 5.04280 * 14 12 11 38 38 H 1.08999 * 109.46913 * 55.01393 * 15 14 12 39 39 H 1.09003 * 109.46914 * 295.02060 * 15 14 12 40 40 H 0.97004 * 119.99732 * 180.02562 * 20 19 17 41 41 H 1.08997 * 117.50308 * 214.96911 * 25 16 15 42 42 H 1.09001 * 117.50237 * 359.97438 * 25 16 15 43 43 H 1.09000 * 117.50270 * 252.51242 * 26 25 16 44 44 H 1.09008 * 117.49647 * 107.48668 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7125 -0.0005 5 6 3.5299 -0.6211 -0.0015 6 6 4.7970 -1.4368 -0.0029 7 1 4.5756 -2.4689 -0.2752 8 6 5.4535 -1.3944 1.3932 9 6 6.9676 -1.3117 1.0651 10 6 6.9613 -0.4392 -0.2148 11 7 5.7594 -0.8640 -0.9553 12 6 5.5716 -0.7421 -2.2843 13 8 4.5024 -1.0451 -2.7776 14 7 6.5690 -0.2843 -3.0666 15 6 6.3315 -0.0471 -4.4927 16 6 7.5771 0.5826 -5.1194 17 6 8.8071 -0.2879 -5.1363 18 1 9.5071 -0.2496 -4.3147 19 6 9.0359 -1.1374 -6.1979 20 7 10.0593 -1.9629 -6.1706 21 14 7.8925 -1.1155 -7.6749 22 1 8.4523 -0.2228 -8.7212 23 1 7.7587 -2.4913 -8.2177 24 1 6.5572 -0.6152 -7.2598 25 6 7.3703 1.5363 -6.2978 26 6 7.7790 2.0875 -4.9303 27 7 2.3031 -1.0841 -0.0064 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5143 31 1 5.2294 -2.3012 1.9550 32 1 5.1294 -0.5113 1.9440 33 1 7.3780 -2.3008 0.8617 34 1 7.5161 -0.8214 1.8694 35 1 7.8574 -0.6269 -0.8063 36 1 6.8925 0.6169 0.0463 37 1 7.4442 -0.1119 -2.6856 38 1 5.4838 0.6275 -4.6125 39 1 6.1150 -0.9940 -4.9874 40 1 10.2205 -2.5603 -6.9177 41 1 8.1238 1.5341 -7.0853 42 1 6.3467 1.7149 -6.6271 43 1 7.0244 2.6288 -4.3597 44 1 8.8017 2.4478 -4.8181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558020645.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:24 Heat of formation + Delta-G solvation = 74.429817 kcal Electronic energy + Delta-G solvation = -27644.466499 eV Core-core repulsion = 23794.496565 eV Total energy + Delta-G solvation = -3849.969934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.53427 -40.23202 -37.97897 -36.88476 -36.03777 -33.77674 -32.98109 -32.16051 -31.56556 -29.65972 -28.90340 -26.67931 -25.29490 -24.22287 -23.38199 -22.19958 -21.79065 -21.20254 -19.57873 -19.28549 -18.02680 -18.00748 -17.15896 -16.84342 -16.36737 -15.65940 -15.08370 -14.74839 -14.44501 -14.32393 -14.06355 -13.72642 -13.62986 -13.34069 -13.25976 -13.04847 -12.74788 -12.68016 -12.40015 -12.27656 -12.15371 -11.95337 -11.52926 -11.33202 -11.17892 -11.15456 -11.01331 -10.92564 -10.50975 -10.21938 -10.04106 -9.81498 -9.55752 -9.20816 -8.91877 -8.70142 -8.56397 -8.24348 -6.18874 -4.23456 1.13702 2.18423 2.62997 2.76935 3.26822 3.38542 3.44318 3.46449 3.68283 4.02959 4.08134 4.31420 4.38490 4.39625 4.63049 4.86635 4.95442 4.97228 5.11210 5.18425 5.22152 5.29936 5.39826 5.43462 5.50859 5.57567 5.62879 5.65861 5.82164 5.88201 5.98475 5.99812 6.05001 6.09709 6.24068 6.40552 6.46489 6.67286 6.95996 7.04373 7.10184 7.22316 7.65333 8.18102 8.33657 8.37587 8.80416 8.91647 9.44737 10.92205 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.003692 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.936453 B = 7582.053792 C = 8333.975985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.165 3.835 3 N -0.390 5.390 4 O 0.083 5.917 5 C 0.191 3.809 6 C 0.251 3.749 7 H 0.121 0.879 8 C -0.123 4.123 9 C -0.128 4.128 10 C 0.096 3.904 11 N -0.636 5.636 12 C 0.718 3.282 13 O -0.591 6.591 14 N -0.711 5.711 15 C 0.177 3.823 16 C -0.015 4.015 17 C -0.492 4.492 18 H 0.078 0.922 19 C 0.081 3.919 20 N -0.894 5.894 21 Si 0.878 3.122 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.254 1.254 25 C -0.190 4.190 26 C -0.179 4.179 27 N -0.476 5.476 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.402 0.598 38 H 0.043 0.957 39 H 0.061 0.939 40 H 0.265 0.735 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 2.696 17.001 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.107 4.107 3 N -0.099 5.099 4 O 0.025 5.975 5 C -0.031 4.031 6 C 0.143 3.857 7 H 0.139 0.861 8 C -0.162 4.162 9 C -0.166 4.166 10 C -0.027 4.027 11 N -0.376 5.376 12 C 0.420 3.580 13 O -0.469 6.469 14 N -0.364 5.364 15 C 0.053 3.947 16 C -0.016 4.016 17 C -0.529 4.529 18 H 0.096 0.904 19 C -0.122 4.122 20 N -0.530 5.530 21 Si 0.706 3.294 22 H -0.206 1.206 23 H -0.221 1.221 24 H -0.178 1.178 25 C -0.228 4.228 26 C -0.216 4.216 27 N -0.211 5.211 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.238 0.762 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.099 2.871 16.360 19.977 hybrid contribution 0.027 0.009 -0.958 0.959 sum -11.072 2.880 15.402 19.186 Atomic orbital electron populations 1.20103 0.83119 1.04320 1.04296 1.25855 1.00497 0.83644 1.00749 1.74583 0.89514 1.24094 1.21670 1.85258 1.22149 1.24696 1.65379 1.29123 0.96994 0.82249 0.94733 1.19842 0.80375 0.94646 0.90842 0.86150 1.22749 0.95843 1.04411 0.93191 1.22803 0.94993 1.01482 0.97293 1.22409 0.88310 0.98902 0.93097 1.47657 1.18176 1.66974 1.04839 1.15548 0.84590 0.78724 0.79163 1.90927 1.26213 1.57158 1.72645 1.45012 1.12625 1.69027 1.09730 1.20993 0.96184 0.99606 0.77951 1.19624 0.95254 0.89002 0.97750 1.20156 1.04412 1.21090 1.07207 0.90398 1.24967 0.94793 0.94153 0.98329 1.69888 1.28965 1.22252 1.31912 0.86867 0.82828 0.76795 0.82949 1.20611 1.22110 1.17828 1.22918 1.00383 1.07075 0.92375 1.22869 1.00930 0.98491 0.99352 1.71820 0.99520 1.29425 1.20286 0.89400 0.89130 0.89698 0.88407 0.89916 0.89571 0.88964 0.89408 0.90904 0.76219 0.93858 0.92107 0.92473 0.89254 0.90678 0.90942 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.51 36.00 0.38 -0.20 16 2 C 0.17 2.40 8.22 -156.37 -1.28 1.11 16 3 N -0.39 -6.21 12.16 30.90 0.38 -5.84 16 4 O 0.08 1.31 11.31 18.08 0.20 1.51 16 5 C 0.19 2.82 6.35 -13.06 -0.08 2.74 16 6 C 0.25 3.04 3.43 -68.11 -0.23 2.80 16 7 H 0.12 1.48 8.14 -51.92 -0.42 1.06 16 8 C -0.12 -0.91 6.47 -24.90 -0.16 -1.07 16 9 C -0.13 -0.85 7.09 -24.59 -0.17 -1.03 16 10 C 0.10 0.94 6.72 -2.53 -0.02 0.92 16 11 N -0.64 -8.89 3.05 -170.00 -0.52 -9.41 16 12 C 0.72 13.47 8.30 -86.92 -0.72 12.75 16 13 O -0.59 -13.42 16.08 5.29 0.09 -13.33 16 14 N -0.71 -13.44 5.43 -65.23 -0.35 -13.79 16 15 C 0.18 3.78 5.24 -4.04 -0.02 3.76 16 16 C -0.01 -0.33 0.85 -155.66 -0.13 -0.46 16 17 C -0.49 -12.66 9.20 -34.44 -0.32 -12.98 16 18 H 0.08 2.14 8.06 -52.48 -0.42 1.72 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 20 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 21 Si 0.88 21.28 24.89 -169.99 -4.23 17.04 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.25 -5.93 5.89 56.52 0.33 -5.59 16 25 C -0.19 -3.90 7.10 -26.73 -0.19 -4.09 16 26 C -0.18 -3.42 9.95 -26.73 -0.27 -3.69 16 27 N -0.48 -7.38 11.55 -9.87 -0.11 -7.50 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.58 7.84 -51.93 -0.41 0.18 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.88 7.06 -51.93 -0.37 0.52 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.40 6.97 6.72 -40.82 -0.27 6.70 16 38 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 39 H 0.06 1.44 7.63 -51.93 -0.40 1.04 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.09 1.91 6.73 -51.93 -0.35 1.56 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -34.26 363.42 -8.11 -42.37 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.49 Total: 6.02 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -3.32 Total: 2.69 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: 0.16 Total: -61.79 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.29 Total: -11.82 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.23 Total: 17.04 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.26 -8.11 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558020645.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.801 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds