Wall clock time and date at job start Tue Mar 31 2020 14:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29948 * 126.28503 * 2 1 4 4 O 1.21301 * 110.25232 * 180.02562 * 3 2 1 5 5 C 1.33649 * 109.81143 * 0.02562 * 4 3 2 6 6 C 1.50692 * 126.55252 * 179.97438 * 5 4 3 7 7 H 1.09011 * 109.99730 * 195.38418 * 6 5 4 8 8 C 1.54332 * 109.99467 * 74.34432 * 6 5 4 9 9 C 1.55147 * 103.02326 * 218.66376 * 8 6 5 10 10 C 1.54911 * 101.58069 * 35.30613 * 9 8 6 11 11 N 1.47019 * 109.88292 * 316.47537 * 6 5 4 12 12 C 1.34777 * 125.64999 * 298.39507 * 11 6 5 13 13 O 1.21585 * 120.00239 * 4.64352 * 12 11 6 14 14 N 1.34776 * 120.00006 * 184.64002 * 12 11 6 15 15 C 1.46503 * 120.00267 * 185.03745 * 14 12 11 16 16 C 1.52995 * 109.47503 * 175.01694 * 15 14 12 17 17 C 1.50699 * 115.55211 * 65.05507 * 16 15 14 18 18 H 1.08006 * 119.99779 * 268.90261 * 17 16 15 19 19 C 1.37874 * 120.00112 * 88.62310 * 17 16 15 20 20 N 1.31510 * 119.99697 * 184.66909 * 19 17 16 21 21 Si 1.86800 * 119.99985 * 4.67664 * 19 17 16 22 22 H 1.48496 * 109.47385 * 94.77505 * 21 19 17 23 23 H 1.48498 * 109.47012 * 214.77737 * 21 19 17 24 24 H 1.48509 * 109.46997 * 334.77506 * 21 19 17 25 25 C 1.52996 * 117.51789 * 210.75731 * 16 15 14 26 26 C 1.52998 * 60.00262 * 107.47659 * 25 16 15 27 27 N 1.31130 * 106.89515 * 0.22281 * 5 4 3 28 28 H 1.09004 * 109.47337 * 89.97184 * 1 2 3 29 29 H 1.09003 * 109.47183 * 209.97095 * 1 2 3 30 30 H 1.09003 * 109.47426 * 329.97256 * 1 2 3 31 31 H 1.09005 * 110.84879 * 100.19023 * 8 6 5 32 32 H 1.09004 * 110.66632 * 337.05197 * 8 6 5 33 33 H 1.09002 * 111.01000 * 277.22949 * 9 8 6 34 34 H 1.08998 * 111.03897 * 153.39037 * 9 8 6 35 35 H 1.08997 * 110.36673 * 204.15022 * 10 9 8 36 36 H 1.09000 * 110.36582 * 81.82837 * 10 9 8 37 37 H 0.96997 * 120.00324 * 5.04280 * 14 12 11 38 38 H 1.08999 * 109.46913 * 55.01393 * 15 14 12 39 39 H 1.09003 * 109.46914 * 295.02060 * 15 14 12 40 40 H 0.97004 * 119.99732 * 180.02562 * 20 19 17 41 41 H 1.08997 * 117.50308 * 214.96911 * 25 16 15 42 42 H 1.09001 * 117.50237 * 359.97438 * 25 16 15 43 43 H 1.09000 * 117.50270 * 252.51242 * 26 25 16 44 44 H 1.09008 * 117.49647 * 107.48668 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7125 -0.0005 5 6 3.5299 -0.6211 -0.0015 6 6 4.7970 -1.4368 -0.0029 7 1 4.5756 -2.4689 -0.2752 8 6 5.4535 -1.3944 1.3932 9 6 6.9676 -1.3117 1.0651 10 6 6.9613 -0.4392 -0.2148 11 7 5.7594 -0.8640 -0.9553 12 6 5.5716 -0.7421 -2.2843 13 8 4.5024 -1.0451 -2.7776 14 7 6.5690 -0.2843 -3.0666 15 6 6.3315 -0.0471 -4.4927 16 6 7.5771 0.5826 -5.1194 17 6 8.8071 -0.2879 -5.1363 18 1 9.5071 -0.2496 -4.3147 19 6 9.0359 -1.1374 -6.1979 20 7 10.0593 -1.9629 -6.1706 21 14 7.8925 -1.1155 -7.6749 22 1 8.4523 -0.2228 -8.7212 23 1 7.7587 -2.4913 -8.2177 24 1 6.5572 -0.6152 -7.2598 25 6 7.3703 1.5363 -6.2978 26 6 7.7790 2.0875 -4.9303 27 7 2.3031 -1.0841 -0.0064 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5143 31 1 5.2294 -2.3012 1.9550 32 1 5.1294 -0.5113 1.9440 33 1 7.3780 -2.3008 0.8617 34 1 7.5161 -0.8214 1.8694 35 1 7.8574 -0.6269 -0.8063 36 1 6.8925 0.6169 0.0463 37 1 7.4442 -0.1119 -2.6856 38 1 5.4838 0.6275 -4.6125 39 1 6.1150 -0.9940 -4.9874 40 1 10.2205 -2.5603 -6.9177 41 1 8.1238 1.5341 -7.0853 42 1 6.3467 1.7149 -6.6271 43 1 7.0244 2.6288 -4.3597 44 1 8.8017 2.4478 -4.8181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558020645.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:23 Heat of formation + Delta-G solvation = 49.181077 kcal Electronic energy + Delta-G solvation = -27645.561367 eV Core-core repulsion = 23794.496565 eV Total energy + Delta-G solvation = -3851.064801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.65116 -41.48216 -39.33085 -38.40118 -37.13275 -35.25510 -34.24785 -34.09109 -32.57113 -30.52425 -29.85147 -28.37132 -27.10627 -25.32736 -24.46417 -23.44309 -23.11902 -22.09872 -21.21351 -20.66264 -19.40543 -19.15291 -18.35596 -18.15039 -17.83771 -17.08955 -16.84164 -16.12650 -15.87434 -15.47699 -15.09379 -14.95112 -14.74354 -14.53849 -14.50527 -14.40770 -13.97198 -13.88603 -13.82046 -13.43660 -13.17652 -13.09124 -12.96042 -12.79309 -12.32051 -12.21039 -12.18108 -12.17432 -12.00177 -11.74201 -11.56407 -11.41201 -11.03330 -10.98060 -10.64999 -10.38308 -10.23485 -9.67143 -8.30204 -6.35846 0.01809 1.08385 1.32403 1.40343 1.44314 1.51199 1.67084 2.07403 2.36662 2.62472 2.91807 3.04512 3.06012 3.30012 3.46006 3.60907 3.80741 3.98736 4.10444 4.19812 4.33807 4.39855 4.42737 4.48823 4.51263 4.51693 4.60028 4.71472 4.73317 4.81154 4.83358 4.86720 4.88771 5.02941 5.06791 5.09259 5.21129 5.26938 5.32845 5.45793 5.54304 5.69190 5.91229 6.28241 6.71573 6.92722 7.06271 7.34648 7.46290 8.83889 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.003692 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.936453 B = 7582.053792 C = 8333.975985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.162 3.838 3 N -0.413 5.413 4 O 0.067 5.933 5 C 0.191 3.809 6 C 0.241 3.759 7 H 0.115 0.885 8 C -0.110 4.110 9 C -0.113 4.113 10 C 0.085 3.915 11 N -0.632 5.632 12 C 0.714 3.286 13 O -0.637 6.637 14 N -0.710 5.710 15 C 0.187 3.813 16 C -0.037 4.037 17 C -0.477 4.477 18 H 0.051 0.949 19 C 0.030 3.970 20 N -0.940 5.940 21 Si 0.925 3.075 22 H -0.270 1.270 23 H -0.304 1.304 24 H -0.240 1.240 25 C -0.191 4.191 26 C -0.151 4.151 27 N -0.499 5.499 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.409 0.591 38 H 0.048 0.952 39 H 0.031 0.969 40 H 0.264 0.736 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.644 3.774 18.676 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.111 4.111 3 N -0.125 5.125 4 O 0.013 5.987 5 C -0.031 4.031 6 C 0.134 3.866 7 H 0.133 0.867 8 C -0.148 4.148 9 C -0.151 4.151 10 C -0.037 4.037 11 N -0.371 5.371 12 C 0.415 3.585 13 O -0.519 6.519 14 N -0.364 5.364 15 C 0.062 3.938 16 C -0.038 4.038 17 C -0.515 4.515 18 H 0.069 0.931 19 C -0.169 4.169 20 N -0.579 5.579 21 Si 0.751 3.249 22 H -0.195 1.195 23 H -0.232 1.232 24 H -0.163 1.163 25 C -0.229 4.229 26 C -0.188 4.188 27 N -0.234 5.234 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.142 0.858 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.246 0.754 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.927 3.976 18.093 22.032 hybrid contribution 0.305 -0.325 -1.384 1.454 sum -11.622 3.651 16.709 20.678 Atomic orbital electron populations 1.20352 0.80128 1.06170 1.05181 1.26712 1.02289 0.83007 0.99108 1.74561 0.89735 1.24929 1.23318 1.85213 1.22359 1.25129 1.66002 1.29636 0.97698 0.82133 0.93605 1.20318 0.79655 0.93629 0.93004 0.86705 1.22823 0.95586 1.06187 0.90224 1.22828 0.94722 1.01346 0.96223 1.22758 0.86336 1.00436 0.94125 1.47674 1.19917 1.65898 1.03580 1.15709 0.83753 0.78345 0.80654 1.90885 1.27818 1.59008 1.74150 1.44879 1.13122 1.69333 1.09020 1.20685 0.95911 0.98089 0.79073 1.19440 0.93946 0.90136 1.00287 1.20314 1.04849 1.20691 1.05607 0.93100 1.25655 0.96012 0.94256 1.00982 1.70004 1.31166 1.23870 1.32879 0.86100 0.81984 0.76350 0.80432 1.19517 1.23227 1.16346 1.22993 1.01369 1.06085 0.92435 1.22882 1.01884 0.95796 0.98236 1.71847 1.00105 1.30126 1.21334 0.88801 0.87331 0.87814 0.85731 0.89121 0.89113 0.85766 0.89830 0.89664 0.75429 0.93389 0.95063 0.92670 0.90023 0.88772 0.88497 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.51 71.24 0.75 -0.32 16 2 C 0.16 4.58 8.22 138.46 1.14 5.71 16 3 N -0.41 -13.00 12.16 -60.29 -0.73 -13.74 16 4 O 0.07 2.09 11.31 74.78 0.85 2.93 16 5 C 0.19 5.55 6.35 88.38 0.56 6.11 16 6 C 0.24 5.59 3.43 44.60 0.15 5.74 16 7 H 0.12 2.78 8.14 -2.38 -0.02 2.76 16 8 C -0.11 -1.30 6.47 31.78 0.21 -1.09 16 9 C -0.11 -1.14 7.09 31.98 0.23 -0.91 16 10 C 0.08 1.51 6.72 86.86 0.58 2.09 16 11 N -0.63 -17.20 3.05 -810.03 -2.47 -19.68 16 12 C 0.71 26.90 8.30 179.05 1.49 28.39 16 13 O -0.64 -29.44 16.08 -3.98 -0.06 -29.51 16 14 N -0.71 -26.80 5.43 -478.54 -2.60 -29.40 16 15 C 0.19 7.96 5.24 86.38 0.45 8.41 16 16 C -0.04 -1.57 0.85 -52.93 -0.04 -1.62 16 17 C -0.48 -24.77 9.20 25.60 0.24 -24.54 16 18 H 0.05 2.86 8.06 -2.91 -0.02 2.83 16 19 C 0.03 1.63 5.47 84.65 0.46 2.10 16 20 N -0.94 -56.16 13.96 21.45 0.30 -55.86 16 21 Si 0.93 43.98 24.89 68.60 1.71 45.69 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 24 H -0.24 -10.77 5.89 99.48 0.59 -10.18 16 25 C -0.19 -7.42 7.10 30.59 0.22 -7.21 16 26 C -0.15 -5.39 9.95 30.59 0.30 -5.08 16 27 N -0.50 -15.28 11.55 -303.18 -3.50 -18.79 16 28 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.09 0.99 7.84 -2.39 -0.02 0.97 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 1.58 7.06 -2.39 -0.02 1.56 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.41 14.09 6.72 -92.71 -0.62 13.47 16 38 H 0.05 1.99 8.09 -2.39 -0.02 1.97 16 39 H 0.03 1.49 7.63 -2.39 -0.02 1.48 16 40 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.08 3.32 6.73 -2.39 -0.02 3.30 16 42 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 Total: -1.00 -76.81 363.42 0.49 -76.32 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.28 Total: 24.23 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 6.73 Total: 17.79 kcal Atomic # 7 Polarization: -128.44 SS G_CDS: -9.01 Total: -137.45 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: 0.78 Total: -26.57 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.71 Total: 45.69 kcal Total: -76.81 0.49 -76.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558020645.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.503 kcal (2) G-P(sol) polarization free energy of solvation -76.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds