Wall clock time and date at job start Tue Mar 31 2020 12:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35263 * 126.69440 * 2 1 4 4 C 1.41997 * 103.95346 * 180.02562 * 3 2 1 5 5 N 1.39725 * 126.88535 * 180.02562 * 4 3 2 6 6 C 1.38854 * 125.99177 * 184.71522 * 5 4 3 7 7 C 1.50696 * 126.05853 * 0.02562 * 6 5 4 8 8 C 1.32868 * 107.88773 * 179.82434 * 6 5 4 9 9 N 1.38704 * 107.92110 * 0.43916 * 8 6 5 10 10 C 1.46500 * 125.96748 * 179.69070 * 9 8 6 11 11 N 1.46900 * 109.47058 * 270.03490 * 10 9 8 12 12 C 1.46900 * 111.00025 * 278.95523 * 11 10 9 13 13 C 1.46897 * 111.00127 * 155.00040 * 11 10 9 14 14 H 1.09004 * 109.46762 * 310.00049 * 13 11 10 15 15 C 1.52997 * 109.47166 * 70.00007 * 13 11 10 16 16 C 1.50706 * 109.46978 * 190.00389 * 13 11 10 17 17 H 1.08001 * 120.00043 * 359.97438 * 16 13 11 18 18 C 1.37874 * 119.99494 * 179.97438 * 16 13 11 19 19 N 1.31516 * 120.00568 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99793 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47057 * 89.99860 * 20 18 16 22 22 H 1.48493 * 109.47563 * 210.00268 * 20 18 16 23 23 H 1.48508 * 109.47074 * 330.00435 * 20 18 16 24 24 C 1.34753 * 108.06670 * 359.71996 * 9 8 6 25 25 O 1.21771 * 125.94721 * 179.97438 * 24 9 8 26 26 N 1.30704 * 106.22242 * 0.26412 * 4 3 2 27 27 O 1.20917 * 111.47836 * 359.53529 * 26 4 3 28 28 H 1.09000 * 109.47419 * 89.99809 * 1 2 3 29 29 H 1.09006 * 109.47181 * 209.99935 * 1 2 3 30 30 H 1.09005 * 109.47035 * 329.99322 * 1 2 3 31 31 H 1.07997 * 128.02252 * 359.97311 * 3 2 1 32 32 H 1.09006 * 109.47596 * 89.99641 * 7 6 5 33 33 H 1.09000 * 109.47117 * 209.99681 * 7 6 5 34 34 H 1.09001 * 109.47306 * 329.99893 * 7 6 5 35 35 H 1.07995 * 126.04042 * 180.15421 * 8 6 5 36 36 H 1.08999 * 109.47024 * 30.03594 * 10 9 8 37 37 H 1.09002 * 109.47287 * 150.03927 * 10 9 8 38 38 H 1.09003 * 109.47394 * 59.99836 * 12 11 10 39 39 H 1.09002 * 109.47115 * 179.97438 * 12 11 10 40 40 H 1.09002 * 109.47200 * 299.99580 * 12 11 10 41 41 H 1.08996 * 109.46955 * 179.97438 * 15 13 11 42 42 H 1.08995 * 109.47126 * 300.00432 * 15 13 11 43 43 H 1.09004 * 109.47246 * 60.00338 * 15 13 11 44 44 H 0.97001 * 120.00236 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0846 0.0000 4 6 3.6248 0.5357 -0.0006 5 7 4.8303 1.2422 -0.0004 6 6 6.1004 0.6889 -0.0933 7 6 6.4221 -0.7785 -0.2128 8 6 6.9818 1.6827 -0.0627 9 7 6.2794 2.8724 0.0598 10 6 6.8647 4.2132 0.1370 11 7 7.1222 4.5549 1.5424 12 6 5.8968 5.0236 2.2032 13 6 8.1948 5.5523 1.6536 14 1 9.0542 5.2287 1.0663 15 6 7.6954 6.8993 1.1272 16 6 8.5991 5.6961 3.0983 17 1 8.1080 5.1059 3.8578 18 6 9.5960 6.5812 3.4503 19 7 10.1937 7.3003 2.5255 20 14 10.0967 6.7600 5.2410 21 1 11.1847 5.7975 5.5493 22 1 10.5763 8.1440 5.4852 23 1 8.9270 6.4805 6.1124 24 6 4.9645 2.5796 0.0961 25 8 4.0557 3.3836 0.1988 26 7 3.4764 -0.7629 -0.0067 27 8 2.3083 -1.0751 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 2.0306 2.1264 -0.0004 32 1 6.4569 -1.0584 -1.2657 33 1 7.3898 -0.9770 0.2481 34 1 5.6524 -1.3616 0.2928 35 1 8.0555 1.5816 -0.1184 36 1 7.8018 4.2330 -0.4193 37 1 6.1721 4.9373 -0.2919 38 1 5.1414 4.2386 2.1671 39 1 6.1156 5.2693 3.2423 40 1 5.5240 5.9104 1.6906 41 1 8.4912 7.6394 1.2103 42 1 7.4029 6.7952 0.0824 43 1 6.8360 7.2229 1.7146 44 1 10.8947 7.9232 2.7732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728901356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:47 Heat of formation + Delta-G solvation = 103.989937 kcal Electronic energy + Delta-G solvation = -27415.566660 eV Core-core repulsion = 23566.878549 eV Total energy + Delta-G solvation = -3848.688111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.08795 -42.35560 -37.56162 -36.89043 -35.57173 -33.88387 -33.02664 -32.12670 -31.13176 -28.88835 -28.04694 -27.43038 -25.81568 -25.30137 -24.35962 -23.16659 -22.51347 -20.77645 -19.71504 -19.35328 -17.93538 -17.74968 -17.01277 -16.47533 -16.31885 -15.59909 -15.17874 -14.87031 -14.54058 -14.29917 -13.91503 -13.73050 -13.62530 -13.57160 -13.32968 -13.23732 -12.99748 -12.68367 -12.56094 -12.28487 -12.05484 -11.65239 -11.49034 -11.28827 -11.17812 -11.02483 -10.80420 -10.75746 -10.54665 -10.25532 -10.11630 -9.98743 -9.64467 -9.33135 -9.01332 -8.45790 -7.62686 -7.38236 -6.08511 -4.12412 1.18317 1.73542 1.93430 2.43032 2.90116 3.15697 3.27863 3.34424 3.37967 3.41076 4.01801 4.36536 4.41371 4.73209 4.86492 4.94651 5.01101 5.07632 5.16439 5.24012 5.30901 5.35804 5.48191 5.49113 5.58083 5.70900 5.71210 5.84212 5.96989 6.13444 6.20454 6.35191 6.50236 6.57801 6.73134 6.84308 6.90235 6.99551 7.26022 7.38201 7.61929 7.73612 7.95190 8.08819 8.22265 8.33669 8.44372 8.92886 9.52969 10.98480 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021712 B = 0.002948 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.275646 B = 9494.320229 C = 9790.884480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.020 4.020 3 C -0.224 4.224 4 C 0.274 3.726 5 N -0.450 5.450 6 C -0.012 4.012 7 C -0.077 4.077 8 C 0.040 3.960 9 N -0.513 5.513 10 C 0.292 3.708 11 N -0.547 5.547 12 C 0.038 3.962 13 C 0.217 3.783 14 H 0.042 0.958 15 C -0.174 4.174 16 C -0.500 4.500 17 H 0.063 0.937 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.666 3.334 25 O -0.554 6.554 26 N -0.378 5.378 27 O 0.098 5.902 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.184 0.816 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.188 0.812 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.023 0.977 41 H 0.091 0.909 42 H 0.006 0.994 43 H 0.035 0.965 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.581 -14.786 -8.197 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C -0.247 4.247 4 C 0.026 3.974 5 N -0.171 5.171 6 C -0.114 4.114 7 C -0.135 4.135 8 C -0.084 4.084 9 N -0.233 5.233 10 C 0.082 3.918 11 N -0.272 5.272 12 C -0.110 4.110 13 C 0.111 3.889 14 H 0.060 0.940 15 C -0.234 4.234 16 C -0.538 4.538 17 H 0.081 0.919 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 C 0.369 3.631 25 O -0.429 6.429 26 N -0.092 5.092 27 O 0.037 5.963 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.201 0.799 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.205 0.795 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.041 0.959 41 H 0.110 0.890 42 H 0.025 0.975 43 H 0.054 0.946 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.060 -15.396 -7.897 21.679 hybrid contribution -0.048 1.735 0.634 1.848 sum -13.108 -13.662 -7.264 20.278 Atomic orbital electron populations 1.20356 0.83528 1.04859 1.04241 1.24315 0.96436 0.85592 1.02042 1.22385 0.89157 1.02153 1.11001 1.20020 0.86377 0.88674 1.02363 1.41664 1.02912 1.06762 1.65762 1.20248 0.81246 0.96825 1.13053 1.20296 1.02874 0.87666 1.02689 1.21718 0.98664 0.82426 1.05591 1.45732 1.04860 1.08322 1.64361 1.22048 0.97788 0.78739 0.93265 1.62024 1.09005 1.45622 1.10566 1.22256 0.90834 0.97620 1.00294 1.19340 0.87137 0.84715 0.97689 0.94046 1.22464 1.01918 1.03578 0.95405 1.21052 1.18819 1.21985 0.91980 0.91899 1.24909 0.96110 0.95527 0.97621 1.69869 1.25255 1.25739 1.32493 0.86487 0.78830 0.77181 0.84856 1.20645 1.21307 1.19935 1.15968 0.84334 0.80734 0.82099 1.90998 1.42603 1.50515 1.58810 1.74041 0.97189 1.12839 1.25117 1.84824 1.10464 1.32343 1.68670 0.89232 0.89639 0.88798 0.79867 0.91175 0.89942 0.90174 0.79522 0.88204 0.91727 0.93542 0.90769 0.95859 0.88998 0.97473 0.94622 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.45 36.00 0.38 0.00 16 2 C -0.02 -0.20 7.48 -35.37 -0.26 -0.47 16 3 C -0.22 -2.96 10.26 -39.20 -0.40 -3.36 16 4 C 0.27 4.18 7.83 -154.62 -1.21 2.97 16 5 N -0.45 -7.39 2.98 -62.52 -0.19 -7.58 16 6 C -0.01 -0.17 6.88 -81.26 -0.56 -0.73 16 7 C -0.08 -0.83 9.88 36.00 0.36 -0.48 16 8 C 0.04 0.56 11.39 -16.29 -0.19 0.37 16 9 N -0.51 -8.78 2.99 -124.71 -0.37 -9.15 16 10 C 0.29 5.29 5.08 -63.32 -0.32 4.97 16 11 N -0.55 -11.65 4.80 -240.19 -1.15 -12.80 16 12 C 0.04 0.81 8.57 60.06 0.51 1.33 16 13 C 0.22 5.20 2.27 -68.86 -0.16 5.04 16 14 H 0.04 1.06 7.80 -51.93 -0.40 0.65 16 15 C -0.17 -4.06 8.26 37.16 0.31 -3.75 16 16 C -0.50 -13.33 7.91 -34.44 -0.27 -13.60 16 17 H 0.06 1.72 7.12 -52.49 -0.37 1.34 16 18 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 19 N -0.89 -24.64 11.32 55.43 0.63 -24.01 16 20 Si 0.90 21.06 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.67 12.25 7.76 -86.95 -0.67 11.57 16 25 O -0.55 -11.24 15.00 5.13 0.08 -11.16 16 26 N -0.38 -5.28 9.96 31.23 0.31 -4.97 16 27 O 0.10 1.16 11.19 17.06 0.19 1.35 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.18 2.48 7.09 -52.49 -0.37 2.10 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.95 6.43 -51.93 -0.33 0.62 16 35 H 0.19 2.06 8.06 -52.49 -0.42 1.63 16 36 H 0.10 1.63 7.64 -51.93 -0.40 1.24 16 37 H 0.06 1.20 7.50 -51.93 -0.39 0.81 16 38 H 0.05 0.98 6.28 -51.93 -0.33 0.66 16 39 H 0.07 1.65 6.76 -51.93 -0.35 1.30 16 40 H 0.02 0.49 6.38 -51.93 -0.33 0.16 16 41 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 42 H 0.01 0.13 7.31 -51.93 -0.38 -0.25 16 43 H 0.03 0.82 6.42 -51.93 -0.33 0.49 16 44 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -31.56 358.28 -8.69 -40.25 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.98 Total: 1.25 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -2.59 Total: 5.38 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.77 Total: -58.51 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.27 Total: -9.80 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.56 -8.69 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728901356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.240 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds