Wall clock time and date at job start Tue Mar 31 2020 12:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35263 * 126.69440 * 2 1 4 4 C 1.41997 * 103.95346 * 180.02562 * 3 2 1 5 5 N 1.39725 * 126.88535 * 180.02562 * 4 3 2 6 6 C 1.38854 * 125.99177 * 184.71522 * 5 4 3 7 7 C 1.50696 * 126.05853 * 0.02562 * 6 5 4 8 8 C 1.32868 * 107.88773 * 179.82434 * 6 5 4 9 9 N 1.38704 * 107.92110 * 0.43916 * 8 6 5 10 10 C 1.46500 * 125.96748 * 179.69070 * 9 8 6 11 11 N 1.46900 * 109.47058 * 270.03490 * 10 9 8 12 12 C 1.46900 * 111.00025 * 278.95523 * 11 10 9 13 13 C 1.46897 * 111.00127 * 155.00040 * 11 10 9 14 14 H 1.09004 * 109.46762 * 310.00049 * 13 11 10 15 15 C 1.52997 * 109.47166 * 70.00007 * 13 11 10 16 16 C 1.50706 * 109.46978 * 190.00389 * 13 11 10 17 17 H 1.08001 * 120.00043 * 359.97438 * 16 13 11 18 18 C 1.37874 * 119.99494 * 179.97438 * 16 13 11 19 19 N 1.31516 * 120.00568 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99793 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47057 * 89.99860 * 20 18 16 22 22 H 1.48493 * 109.47563 * 210.00268 * 20 18 16 23 23 H 1.48508 * 109.47074 * 330.00435 * 20 18 16 24 24 C 1.34753 * 108.06670 * 359.71996 * 9 8 6 25 25 O 1.21771 * 125.94721 * 179.97438 * 24 9 8 26 26 N 1.30704 * 106.22242 * 0.26412 * 4 3 2 27 27 O 1.20917 * 111.47836 * 359.53529 * 26 4 3 28 28 H 1.09000 * 109.47419 * 89.99809 * 1 2 3 29 29 H 1.09006 * 109.47181 * 209.99935 * 1 2 3 30 30 H 1.09005 * 109.47035 * 329.99322 * 1 2 3 31 31 H 1.07997 * 128.02252 * 359.97311 * 3 2 1 32 32 H 1.09006 * 109.47596 * 89.99641 * 7 6 5 33 33 H 1.09000 * 109.47117 * 209.99681 * 7 6 5 34 34 H 1.09001 * 109.47306 * 329.99893 * 7 6 5 35 35 H 1.07995 * 126.04042 * 180.15421 * 8 6 5 36 36 H 1.08999 * 109.47024 * 30.03594 * 10 9 8 37 37 H 1.09002 * 109.47287 * 150.03927 * 10 9 8 38 38 H 1.09003 * 109.47394 * 59.99836 * 12 11 10 39 39 H 1.09002 * 109.47115 * 179.97438 * 12 11 10 40 40 H 1.09002 * 109.47200 * 299.99580 * 12 11 10 41 41 H 1.08996 * 109.46955 * 179.97438 * 15 13 11 42 42 H 1.08995 * 109.47126 * 300.00432 * 15 13 11 43 43 H 1.09004 * 109.47246 * 60.00338 * 15 13 11 44 44 H 0.97001 * 120.00236 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0846 0.0000 4 6 3.6248 0.5357 -0.0006 5 7 4.8303 1.2422 -0.0004 6 6 6.1004 0.6889 -0.0933 7 6 6.4221 -0.7785 -0.2128 8 6 6.9818 1.6827 -0.0627 9 7 6.2794 2.8724 0.0598 10 6 6.8647 4.2132 0.1370 11 7 7.1222 4.5549 1.5424 12 6 5.8968 5.0236 2.2032 13 6 8.1948 5.5523 1.6536 14 1 9.0542 5.2287 1.0663 15 6 7.6954 6.8993 1.1272 16 6 8.5991 5.6961 3.0983 17 1 8.1080 5.1059 3.8578 18 6 9.5960 6.5812 3.4503 19 7 10.1937 7.3003 2.5255 20 14 10.0967 6.7600 5.2410 21 1 11.1847 5.7975 5.5493 22 1 10.5763 8.1440 5.4852 23 1 8.9270 6.4805 6.1124 24 6 4.9645 2.5796 0.0961 25 8 4.0557 3.3836 0.1988 26 7 3.4764 -0.7629 -0.0067 27 8 2.3083 -1.0751 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 2.0306 2.1264 -0.0004 32 1 6.4569 -1.0584 -1.2657 33 1 7.3898 -0.9770 0.2481 34 1 5.6524 -1.3616 0.2928 35 1 8.0555 1.5816 -0.1184 36 1 7.8018 4.2330 -0.4193 37 1 6.1721 4.9373 -0.2919 38 1 5.1414 4.2386 2.1671 39 1 6.1156 5.2693 3.2423 40 1 5.5240 5.9104 1.6906 41 1 8.4912 7.6394 1.2103 42 1 7.4029 6.7952 0.0824 43 1 6.8360 7.2229 1.7146 44 1 10.8947 7.9232 2.7732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728901356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:46 Heat of formation + Delta-G solvation = 86.326910 kcal Electronic energy + Delta-G solvation = -27416.332586 eV Core-core repulsion = 23566.878549 eV Total energy + Delta-G solvation = -3849.454037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.10428 -43.60367 -39.21098 -38.26691 -36.86584 -34.94082 -34.55172 -33.48133 -32.20090 -30.67408 -28.90460 -28.72230 -27.30785 -27.11167 -25.73768 -24.47947 -23.65894 -22.12397 -21.16373 -20.73316 -18.96688 -18.82849 -18.38776 -17.96763 -17.81334 -17.03661 -16.87754 -16.30770 -16.06402 -15.61002 -15.25938 -15.00126 -14.77029 -14.44648 -14.41576 -14.34451 -14.07899 -13.97917 -13.50560 -13.47455 -13.23319 -13.13189 -13.06571 -12.92494 -12.79872 -12.65541 -12.45670 -12.23982 -12.20636 -12.07838 -11.82265 -11.62641 -11.01292 -10.63489 -10.50230 -10.35971 -9.18732 -8.76658 -8.12761 -6.22883 0.21686 0.70608 0.71186 1.27957 1.42087 1.43882 1.53140 1.85678 2.04091 2.21737 2.42800 3.01874 3.16601 3.28788 3.40808 3.73896 3.90033 4.10144 4.18780 4.20635 4.24213 4.34911 4.48142 4.58805 4.62284 4.71298 4.74040 4.75927 4.77343 4.85602 4.87248 5.02779 5.04377 5.06522 5.07175 5.21021 5.29175 5.41740 5.65838 5.70167 5.79034 6.04304 6.18347 6.36859 6.54085 6.86380 6.96512 7.13007 7.45831 8.92784 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021712 B = 0.002948 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.275646 B = 9494.320229 C = 9790.884480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.011 3.989 3 C -0.255 4.255 4 C 0.242 3.758 5 N -0.455 5.455 6 C -0.013 4.013 7 C -0.072 4.072 8 C 0.028 3.972 9 N -0.516 5.516 10 C 0.298 3.702 11 N -0.553 5.553 12 C 0.053 3.947 13 C 0.224 3.776 14 H 0.028 0.972 15 C -0.162 4.162 16 C -0.516 4.516 17 H 0.050 0.950 18 C 0.019 3.981 19 N -0.915 5.915 20 Si 0.955 3.045 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.275 1.275 24 C 0.651 3.349 25 O -0.585 6.585 26 N -0.383 5.383 27 O 0.105 5.895 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.174 0.826 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.219 0.781 36 H 0.120 0.880 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.022 0.978 41 H 0.068 0.932 42 H 0.029 0.971 43 H 0.029 0.971 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.180 -16.514 -8.411 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.053 4.053 3 C -0.279 4.279 4 C -0.005 4.005 5 N -0.175 5.175 6 C -0.114 4.114 7 C -0.129 4.129 8 C -0.094 4.094 9 N -0.236 5.236 10 C 0.087 3.913 11 N -0.278 5.278 12 C -0.095 4.095 13 C 0.118 3.882 14 H 0.046 0.954 15 C -0.221 4.221 16 C -0.554 4.554 17 H 0.068 0.932 18 C -0.181 4.181 19 N -0.555 5.555 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.200 1.200 24 C 0.353 3.647 25 O -0.464 6.464 26 N -0.096 5.096 27 O 0.043 5.957 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.191 0.809 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.138 0.862 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.646 -17.180 -8.125 23.396 hybrid contribution 0.007 2.160 0.655 2.257 sum -13.638 -15.020 -7.471 21.620 Atomic orbital electron populations 1.20680 0.79618 1.06520 1.06120 1.25056 0.98029 0.83839 0.98364 1.22436 0.89212 1.02668 1.13535 1.20367 0.86666 0.89435 1.04013 1.41716 1.04159 1.06333 1.65266 1.20920 0.80294 0.98425 1.11765 1.20393 1.03679 0.85070 1.03773 1.22279 1.00029 0.81080 1.05965 1.45624 1.04866 1.08765 1.64307 1.21997 0.98577 0.79300 0.91388 1.61922 1.08363 1.44746 1.12780 1.22060 0.90731 0.97396 0.99357 1.19101 0.87480 0.85515 0.96139 0.95379 1.22281 1.00667 1.02486 0.96706 1.21268 1.19040 1.21997 0.93132 0.93150 1.25561 0.96146 0.95283 1.01071 1.69967 1.25531 1.26049 1.33949 0.85602 0.78373 0.77228 0.80671 1.20103 1.20875 1.20003 1.16159 0.84466 0.81365 0.82704 1.90949 1.43494 1.51553 1.60397 1.74045 0.98232 1.12168 1.25177 1.84796 1.10164 1.32783 1.67980 0.86987 0.87372 0.87664 0.80853 0.89711 0.87393 0.91293 0.76472 0.86203 0.92341 0.93814 0.92317 0.95954 0.91319 0.95224 0.95222 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.45 71.24 0.74 0.21 16 2 C 0.01 0.20 7.48 25.00 0.19 0.39 16 3 C -0.26 -6.76 10.26 22.52 0.23 -6.53 16 4 C 0.24 7.41 7.83 134.03 1.05 8.46 16 5 N -0.45 -15.00 2.98 -470.95 -1.40 -16.41 16 6 C -0.01 -0.35 6.88 40.27 0.28 -0.08 16 7 C -0.07 -1.40 9.88 71.23 0.70 -0.70 16 8 C 0.03 0.76 11.39 82.43 0.94 1.70 16 9 N -0.52 -17.54 2.99 -666.67 -1.99 -19.53 16 10 C 0.30 10.69 5.08 170.81 0.87 11.55 16 11 N -0.55 -23.60 4.80 -913.82 -4.39 -27.99 16 12 C 0.05 2.29 8.57 127.69 1.09 3.38 16 13 C 0.22 10.79 2.27 44.17 0.10 10.89 16 14 H 0.03 1.44 7.80 -2.38 -0.02 1.42 16 15 C -0.16 -7.56 8.26 71.98 0.59 -6.96 16 16 C -0.52 -27.69 7.91 25.60 0.20 -27.49 16 17 H 0.05 2.78 7.12 -2.91 -0.02 2.76 16 18 C 0.02 1.00 5.30 84.65 0.45 1.44 16 19 N -0.92 -50.49 11.32 21.45 0.24 -50.25 16 20 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 C 0.65 24.35 7.76 179.07 1.39 25.74 16 25 O -0.59 -24.59 15.00 -4.58 -0.07 -24.66 16 26 N -0.38 -10.43 9.96 -56.21 -0.56 -10.99 16 27 O 0.11 2.33 11.19 71.21 0.80 3.13 16 28 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.17 4.90 7.09 -2.91 -0.02 4.88 16 32 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.54 6.43 -2.39 -0.02 1.53 16 35 H 0.22 4.27 8.06 -2.91 -0.02 4.24 16 36 H 0.12 3.79 7.64 -2.39 -0.02 3.77 16 37 H 0.06 2.18 7.50 -2.39 -0.02 2.16 16 38 H 0.04 1.90 6.28 -2.39 -0.01 1.88 16 39 H 0.06 2.68 6.76 -2.39 -0.02 2.66 16 40 H 0.02 0.95 6.38 -2.39 -0.02 0.93 16 41 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 42 H 0.03 1.20 7.31 -2.39 -0.02 1.18 16 43 H 0.03 1.37 6.42 -2.38 -0.02 1.35 16 44 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -69.24 358.28 4.51 -64.73 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 1.02 Total: 14.82 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 8.83 Total: 22.02 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -8.10 Total: -125.17 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.73 Total: -21.53 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -69.24 4.51 -64.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728901356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.054 kcal (2) G-P(sol) polarization free energy of solvation -69.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds