Wall clock time and date at job start Tue Mar 31 2020 13:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29951 * 125.30928 * 2 1 4 4 O 1.41870 * 107.41690 * 180.24831 * 3 2 1 5 5 N 1.41869 * 106.38879 * 359.72097 * 4 3 2 6 6 C 1.29951 * 107.41719 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.30839 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47310 * 90.02347 * 7 6 5 9 9 N 1.40068 * 126.03658 * 90.02375 * 8 7 6 10 10 C 1.30831 * 108.34213 * 179.97438 * 9 8 7 11 11 C 1.50701 * 125.85945 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47353 * 246.03558 * 11 10 9 13 13 C 1.52998 * 109.47028 * 6.03806 * 11 10 9 14 14 C 1.53001 * 109.46731 * 126.03096 * 11 10 9 15 15 C 1.39823 * 108.27966 * 0.02562 * 10 9 8 16 16 C 1.50703 * 126.07979 * 179.97438 * 15 10 9 17 17 C 1.50696 * 109.47028 * 95.75379 * 16 15 10 18 18 H 1.07992 * 120.00384 * 359.97438 * 17 16 15 19 19 C 1.37888 * 119.99609 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99904 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99669 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47374 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47267 * 119.99838 * 21 19 17 24 24 H 1.48506 * 109.47183 * 239.99660 * 21 19 17 25 25 C 1.35131 * 126.03668 * 270.25148 * 8 7 6 26 26 O 1.35756 * 126.19333 * 0.05434 * 25 8 7 27 27 H 1.09002 * 109.46802 * 270.22378 * 1 2 3 28 28 H 1.08997 * 109.47101 * 30.21869 * 1 2 3 29 29 H 1.08995 * 109.47339 * 150.22724 * 1 2 3 30 30 H 1.09000 * 109.47229 * 330.02369 * 7 6 5 31 31 H 1.09004 * 109.47421 * 210.02509 * 7 6 5 32 32 H 1.08993 * 109.47414 * 64.88837 * 12 11 10 33 33 H 1.09002 * 109.46712 * 184.88844 * 12 11 10 34 34 H 1.09002 * 109.46789 * 304.88750 * 12 11 10 35 35 H 1.08998 * 109.47629 * 59.99673 * 13 11 10 36 36 H 1.08996 * 109.47030 * 179.97438 * 13 11 10 37 37 H 1.09000 * 109.46895 * 299.99282 * 13 11 10 38 38 H 1.09000 * 109.47072 * 60.00632 * 14 11 10 39 39 H 1.09004 * 109.46751 * 179.97438 * 14 11 10 40 40 H 1.08992 * 109.47337 * 300.00417 * 14 11 10 41 41 H 1.09006 * 109.47133 * 335.75408 * 16 15 10 42 42 H 1.08994 * 109.47168 * 215.75553 * 16 15 10 43 43 H 0.97005 * 119.99397 * 179.97438 * 20 19 17 44 44 H 0.96698 * 114.00238 * 270.14175 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6246 -0.0059 5 7 3.5710 -0.7936 -0.0027 6 6 2.3213 -1.1499 0.0049 7 6 1.8209 -2.5714 0.0112 8 7 1.6656 -3.0283 1.3945 9 7 0.5098 -2.9096 2.1766 10 6 0.7526 -3.4308 3.3518 11 6 -0.2204 -3.5117 4.4998 12 6 0.2730 -2.6311 5.6496 13 6 -1.5954 -3.0246 4.0382 14 6 -0.3267 -4.9615 4.9770 15 6 2.0701 -3.8989 3.3603 16 6 2.7656 -4.5717 4.5156 17 6 2.6714 -6.0673 4.3564 18 1 2.1589 -6.4885 3.5042 19 6 3.2387 -6.8980 5.2995 20 7 3.8624 -6.3851 6.3375 21 14 3.1227 -8.7518 5.1018 22 1 2.3760 -9.0713 3.8586 23 1 4.4892 -9.3276 5.0209 24 1 2.4101 -9.3305 6.2692 25 6 2.6136 -3.6349 2.1425 26 8 3.8790 -3.9290 1.7486 27 1 -0.3633 0.0040 1.0277 28 1 -0.3633 0.8880 -0.5172 29 1 -0.3634 -0.8920 -0.5103 30 1 2.5372 -3.2110 -0.5044 31 1 0.8582 -2.6200 -0.4977 32 1 0.2661 -1.5871 5.3366 33 1 -0.3833 -2.7566 6.5108 34 1 1.2878 -2.9225 5.9207 35 1 -1.9470 -3.6519 3.2191 36 1 -2.2992 -3.0836 4.8684 37 1 -1.5196 -1.9918 3.6983 38 1 0.6528 -5.3085 5.3058 39 1 -1.0301 -5.0199 5.8076 40 1 -0.6782 -5.5887 4.1578 41 1 2.2884 -4.2750 5.4496 42 1 3.8137 -4.2734 4.5323 43 1 4.2612 -6.9696 7.0011 44 1 3.9714 -4.8009 1.3409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853675909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:25 Heat of formation + Delta-G solvation = 92.715166 kcal Electronic energy + Delta-G solvation = -28047.343935 eV Core-core repulsion = 24198.166914 eV Total energy + Delta-G solvation = -3849.177022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.82219 -42.27445 -38.54442 -37.49083 -35.93204 -35.25531 -34.74049 -32.90695 -31.77100 -29.78419 -28.92224 -28.03444 -27.76184 -27.60464 -24.76090 -23.97812 -22.69498 -21.73036 -21.57871 -19.75965 -18.78975 -18.35606 -18.10639 -17.46857 -16.99364 -16.48502 -16.36259 -15.93062 -15.47396 -15.36348 -15.08818 -14.66873 -14.56051 -14.34630 -14.25602 -14.16040 -13.75564 -13.37108 -13.30106 -13.05147 -12.97774 -12.92591 -12.81047 -12.73472 -12.63339 -12.50293 -12.35969 -12.24165 -12.01913 -11.75697 -11.71775 -11.67696 -11.48773 -11.35680 -10.91256 -10.43985 -10.01253 -9.09394 -8.05918 -6.15964 -0.73109 0.56641 0.72828 1.39256 1.43286 1.45586 1.55361 1.57047 1.85357 1.94527 2.48974 2.68149 3.13454 3.24393 3.46799 3.51327 3.78117 4.00267 4.08490 4.19245 4.22371 4.25700 4.46764 4.58296 4.61487 4.66892 4.71336 4.90013 4.96535 5.05472 5.08011 5.08835 5.17127 5.20353 5.32587 5.35662 5.48015 5.59741 5.64458 5.70267 5.78561 5.84606 5.87184 5.98238 6.34366 6.72136 6.79205 6.95075 7.50063 9.02404 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.004353 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.872721 B = 6430.567396 C = 7516.045121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.105 3.895 3 N -0.304 5.304 4 O -0.013 6.013 5 N -0.274 5.274 6 C 0.060 3.940 7 C 0.202 3.798 8 N -0.388 5.388 9 N -0.269 5.269 10 C 0.100 3.900 11 C 0.017 3.983 12 C -0.138 4.138 13 C -0.122 4.122 14 C -0.147 4.147 15 C -0.216 4.216 16 C 0.101 3.899 17 C -0.495 4.495 18 H 0.052 0.948 19 C 0.009 3.991 20 N -0.931 5.931 21 Si 0.950 3.050 22 H -0.263 1.263 23 H -0.286 1.286 24 H -0.281 1.281 25 C 0.239 3.761 26 O -0.471 6.471 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.172 0.828 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.023 0.977 42 H -0.021 1.021 43 H 0.260 0.740 44 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.135 7.165 -13.028 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 N -0.053 5.053 4 O -0.148 6.148 5 N -0.019 5.019 6 C -0.126 4.126 7 C 0.080 3.920 8 N -0.183 5.183 9 N -0.093 5.093 10 C -0.066 4.066 11 C 0.015 3.985 12 C -0.196 4.196 13 C -0.180 4.180 14 C -0.204 4.204 15 C -0.227 4.227 16 C 0.064 3.936 17 C -0.534 4.534 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.571 5.571 21 Si 0.776 3.224 22 H -0.187 1.187 23 H -0.212 1.212 24 H -0.207 1.207 25 C 0.073 3.927 26 O -0.275 6.275 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.189 0.811 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.041 0.959 42 H -0.003 1.003 43 H 0.069 0.931 44 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -12.372 9.084 -13.578 20.492 hybrid contribution 1.158 -2.144 0.547 2.497 sum -11.214 6.940 -13.030 18.539 Atomic orbital electron populations 1.20878 0.80466 1.07351 1.06075 1.25283 1.02219 0.87441 0.92842 1.79909 0.88379 1.20655 1.16396 1.93378 1.22063 1.13844 1.85532 1.79990 1.19241 0.91311 1.11344 1.25333 0.89651 1.00655 0.96929 1.20449 1.06796 0.85200 0.79596 1.48773 1.08812 1.49061 1.11695 1.77150 1.03038 1.25822 1.03280 1.22172 0.93949 0.96208 0.94256 1.19019 0.93011 0.96806 0.89696 1.21899 1.01309 0.98672 0.97730 1.21700 0.93582 1.01223 1.01460 1.22020 1.03619 0.94103 1.00695 1.20410 0.95985 1.08890 0.97410 1.17412 0.92124 0.93631 0.90473 1.21221 1.33651 0.91243 1.07258 0.92927 1.25738 0.95211 1.02752 0.95137 1.70093 1.37916 1.36410 1.12729 0.85617 0.77554 0.80834 0.78360 1.18679 1.21223 1.20700 1.18527 0.82887 1.00515 0.90777 1.84812 1.20290 1.41294 1.81141 0.87971 0.87463 0.85675 0.84849 0.81104 0.92551 0.90174 0.94270 0.92378 0.90858 0.92068 0.91606 0.91241 0.93466 0.95925 1.00309 0.93064 0.73231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 10.23 71.24 0.73 -0.30 16 2 C 0.11 2.26 7.19 43.49 0.31 2.58 16 3 N -0.30 -8.50 12.98 -47.15 -0.61 -9.11 16 4 O -0.01 -0.45 13.71 70.20 0.96 0.51 16 5 N -0.27 -8.56 12.98 -47.16 -0.61 -9.18 16 6 C 0.06 1.44 6.77 43.49 0.29 1.73 16 7 C 0.20 3.84 6.73 85.63 0.58 4.41 16 8 N -0.39 -11.29 3.60 -463.50 -1.67 -12.96 16 9 N -0.27 -8.16 11.86 -47.42 -0.56 -8.72 16 10 C 0.10 3.58 5.61 43.09 0.24 3.83 16 11 C 0.02 0.53 0.75 -52.93 -0.04 0.49 16 12 C -0.14 -4.33 8.36 71.98 0.60 -3.73 16 13 C -0.12 -2.86 7.96 71.98 0.57 -2.29 16 14 C -0.15 -5.03 8.24 71.98 0.59 -4.44 16 15 C -0.22 -9.14 5.11 -20.01 -0.10 -9.25 16 16 C 0.10 5.19 4.42 29.10 0.13 5.32 16 17 C -0.50 -26.02 7.49 25.60 0.19 -25.83 16 18 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 19 C 0.01 0.50 5.46 84.66 0.46 0.97 16 20 N -0.93 -54.37 13.29 21.45 0.28 -54.09 16 21 Si 0.95 42.35 29.54 68.60 2.03 44.38 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 23 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C 0.24 8.89 7.92 83.65 0.66 9.56 16 26 O -0.47 -16.86 13.53 -90.82 -1.23 -18.09 16 27 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.12 0.68 7.13 -2.39 -0.02 0.66 16 30 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.17 1.64 7.13 -2.39 -0.02 1.62 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.04 1.50 5.68 -2.39 -0.01 1.48 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 2.85 4.16 -2.39 -0.01 2.84 16 39 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.02 1.22 4.59 -2.38 -0.01 1.21 16 42 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 43 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 44 H 0.41 11.02 9.06 -74.06 -0.67 10.35 16 Total: -1.00 -73.68 368.40 4.19 -69.50 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.37 Total: 14.71 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 5.22 Total: -16.95 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -3.17 Total: -94.06 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.27 Total: -17.57 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -73.68 4.19 -69.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853675909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.212 kcal (2) G-P(sol) polarization free energy of solvation -73.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds