Wall clock time and date at job start Tue Mar 31 2020 13:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30652 * 128.64223 * 2 1 4 4 O 1.20836 * 109.62063 * 180.02562 * 3 2 1 5 5 N 1.20909 * 115.90663 * 359.69467 * 4 3 2 6 6 C 1.31609 * 109.17737 * 0.49703 * 5 4 3 7 7 C 1.48276 * 128.70730 * 179.82439 * 6 5 4 8 8 O 1.21502 * 119.99841 * 179.67484 * 7 6 5 9 9 N 1.34779 * 120.00303 * 359.67808 * 7 6 5 10 10 C 1.46494 * 119.99770 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.02179 * 33.93109 * 10 9 7 12 12 C 1.52534 * 109.03260 * 274.99623 * 10 9 7 13 13 C 1.53845 * 111.64381 * 293.55419 * 12 10 9 14 14 C 1.51432 * 107.03552 * 302.79708 * 13 12 10 15 15 H 1.08994 * 110.19019 * 305.65314 * 14 13 12 16 16 C 1.52323 * 117.47275 * 178.82222 * 14 13 12 17 17 N 1.48243 * 105.86551 * 214.64213 * 16 14 13 18 18 C 1.36935 * 125.78318 * 183.17045 * 17 16 14 19 19 H 1.08007 * 119.99764 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00344 * 359.96784 * 18 17 16 21 21 N 1.31617 * 119.99478 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00114 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47166 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46925 * 120.00267 * 22 20 18 25 25 H 1.48495 * 109.47468 * 240.00150 * 22 20 18 26 26 C 1.48657 * 108.43235 * 3.18661 * 17 16 14 27 27 C 1.53066 * 103.44684 * 24.37659 * 26 17 16 28 28 H 1.09002 * 110.56438 * 75.67830 * 27 26 17 29 29 C 1.51620 * 117.48930 * 203.78704 * 27 26 17 30 30 H 1.08993 * 109.46836 * 269.97623 * 1 2 3 31 31 H 1.09003 * 109.46985 * 29.97782 * 1 2 3 32 32 H 1.08995 * 109.46563 * 149.97368 * 1 2 3 33 33 H 0.97001 * 119.99909 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.04572 * 172.99900 * 12 10 9 35 35 H 1.08999 * 108.98645 * 54.06884 * 12 10 9 36 36 H 1.08995 * 109.94127 * 183.41715 * 13 12 10 37 37 H 1.09003 * 110.01447 * 62.21641 * 13 12 10 38 38 H 1.09003 * 110.17198 * 333.73935 * 16 14 13 39 39 H 1.08997 * 110.17360 * 95.53662 * 16 14 13 40 40 H 0.97001 * 119.99867 * 179.97438 * 21 20 18 41 41 H 1.09002 * 110.62740 * 265.88573 * 26 17 16 42 42 H 1.09000 * 110.62789 * 142.87191 * 26 17 16 43 43 H 1.09010 * 109.94362 * 296.01571 * 29 27 26 44 44 H 1.09000 * 109.94520 * 57.25797 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0205 0.0000 4 8 3.4653 0.6266 -0.0005 5 7 3.6102 -0.5737 0.0049 6 6 2.4280 -1.1520 -0.0007 7 6 2.1035 -2.5988 -0.0009 8 8 0.9437 -2.9612 -0.0006 9 7 3.0948 -3.5119 -0.0015 10 6 2.7740 -4.9413 -0.0023 11 1 1.8621 -5.1003 -0.5776 12 6 2.5426 -5.4000 1.4339 13 6 3.8331 -5.3261 2.2681 14 6 4.8671 -6.1780 1.5622 15 1 4.4798 -7.1842 1.4023 16 6 6.2578 -6.2504 2.1793 17 7 7.2022 -6.3431 1.0403 18 6 8.5603 -6.4895 1.1362 19 1 9.1617 -6.5476 0.2409 20 6 9.1642 -6.5632 2.3839 21 7 8.4312 -6.4927 3.4748 22 14 11.0169 -6.7622 2.5146 23 1 11.6064 -6.8147 1.1527 24 1 11.5875 -5.6091 3.2564 25 1 11.3298 -8.0203 3.2387 26 6 6.4250 -6.2496 -0.2235 27 6 5.1578 -5.4986 0.1926 28 1 5.3680 -4.4374 0.3259 29 6 3.9183 -5.6920 -0.6589 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3632 -0.8897 -0.5142 33 1 4.0207 -3.2225 -0.0021 34 1 2.1832 -6.4289 1.4251 35 1 1.7860 -4.7630 1.8920 36 1 3.6512 -5.7159 3.2696 37 1 4.1799 -4.2944 2.3283 38 1 6.4581 -5.3509 2.7614 39 1 6.3431 -7.1344 2.8112 40 1 8.8531 -6.5446 4.3468 41 1 6.1774 -7.2435 -0.5964 42 1 6.9779 -5.6839 -0.9734 43 1 4.0926 -5.3044 -1.6627 44 1 3.6617 -6.7502 -0.7072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980260501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:10 Heat of formation + Delta-G solvation = 99.823153 kcal Electronic energy + Delta-G solvation = -27562.641520 eV Core-core repulsion = 23713.772724 eV Total energy + Delta-G solvation = -3848.868796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.13673 -40.60385 -38.90234 -35.93086 -35.40075 -34.96692 -33.32189 -31.88256 -30.89383 -29.75239 -28.94770 -26.64330 -25.86252 -24.99919 -22.89866 -22.05844 -21.63430 -20.76006 -19.80657 -19.30328 -19.04417 -18.73623 -17.37730 -16.74841 -16.12719 -15.46034 -15.01562 -14.84379 -14.39299 -14.38415 -14.00597 -13.86865 -13.73946 -13.63209 -13.29573 -12.84884 -12.37038 -12.29776 -12.24315 -12.13272 -12.05345 -11.50172 -11.44147 -11.24603 -11.11584 -10.87602 -10.80322 -10.70886 -10.63571 -10.51888 -10.01600 -9.95322 -9.88841 -9.57103 -9.47009 -9.11950 -8.60926 -6.82845 -5.69866 -3.02896 0.50802 1.02415 2.43755 2.70838 3.09151 3.17294 3.40307 3.45828 3.48238 3.64136 4.39213 4.48871 4.54065 4.75000 4.76878 4.85236 4.93741 5.08928 5.23691 5.23818 5.27742 5.50738 5.56868 5.57873 5.60935 5.64208 5.74119 5.87176 6.04877 6.07277 6.17233 6.21143 6.25846 6.34341 6.50407 6.57002 6.61227 6.78606 6.96439 7.14757 7.55880 7.63862 7.74499 7.83365 8.17332 8.23351 9.21138 9.81841 10.49298 11.42094 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.003199 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.735673 B = 8751.757749 C = 9639.698983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.060 3.940 3 N -0.359 5.359 4 O 0.344 5.656 5 N -0.315 5.315 6 C -0.045 4.045 7 C 0.606 3.394 8 O -0.518 6.518 9 N -0.698 5.698 10 C 0.152 3.848 11 H 0.090 0.910 12 C -0.127 4.127 13 C -0.100 4.100 14 C -0.116 4.116 15 H 0.065 0.935 16 C 0.188 3.812 17 N -0.609 5.609 18 C -0.225 4.225 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.144 3.856 27 C -0.110 4.110 28 H 0.069 0.931 29 C -0.113 4.113 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.410 0.590 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.037 0.963 39 H 0.050 0.950 40 H 0.251 0.749 41 H 0.021 0.979 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.091 9.145 -7.512 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 N -0.085 5.085 4 O 0.118 5.882 5 N -0.034 5.034 6 C -0.211 4.211 7 C 0.388 3.612 8 O -0.393 6.393 9 N -0.351 5.351 10 C 0.049 3.951 11 H 0.108 0.892 12 C -0.166 4.166 13 C -0.138 4.138 14 C -0.135 4.135 15 H 0.083 0.917 16 C 0.064 3.936 17 N -0.336 5.336 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.741 3.259 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.018 3.982 27 C -0.129 4.129 28 H 0.087 0.913 29 C -0.151 4.151 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.247 0.753 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.087 0.913 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.786 9.505 -7.345 20.641 hybrid contribution 0.910 -0.431 0.250 1.038 sum -15.876 9.073 -7.094 19.613 Atomic orbital electron populations 1.20338 0.82920 1.05190 1.04765 1.26245 1.00355 0.85173 0.98805 1.75067 0.91209 1.24063 1.18188 1.85089 1.23248 1.16633 1.63221 1.75437 1.22969 0.92805 1.12233 1.26158 0.88102 0.98619 1.08222 1.16458 0.85796 0.81468 0.77469 1.90799 1.18854 1.79516 1.50135 1.46225 1.09654 1.06807 1.72434 1.20896 0.99128 0.77756 0.97329 0.89192 1.21957 0.98491 1.01752 0.94388 1.21232 0.94040 1.00037 0.98456 1.22166 0.97600 0.97875 0.95906 0.91675 1.20807 0.82856 1.00818 0.89133 1.45092 1.02616 1.86471 0.99406 1.19109 0.80995 1.42653 0.92606 0.90474 1.24785 0.97952 1.02458 0.95402 1.69971 1.33169 1.57072 0.96744 0.86063 0.85095 0.77299 0.77429 1.20556 1.21808 1.21822 1.21256 0.90436 0.96153 0.90333 1.22047 0.94394 0.99866 0.96609 0.91275 1.21292 0.94092 1.00972 0.98790 0.88816 0.89482 0.87972 0.75258 0.90833 0.91813 0.91733 0.92233 0.94445 0.93187 0.93897 0.96095 0.94312 0.91285 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.22 36.01 0.37 -0.16 16 2 C 0.06 0.62 7.79 -79.32 -0.62 0.00 16 3 N -0.36 -3.96 12.22 33.76 0.41 -3.54 16 4 O 0.34 3.94 11.65 27.26 0.32 4.26 16 5 N -0.31 -3.83 12.13 33.50 0.41 -3.42 16 6 C -0.05 -0.53 7.56 -80.07 -0.61 -1.14 16 7 C 0.61 7.51 7.79 -12.13 -0.09 7.42 16 8 O -0.52 -7.09 15.59 5.36 0.08 -7.00 16 9 N -0.70 -8.32 4.64 -55.45 -0.26 -8.58 16 10 C 0.15 1.76 2.68 -68.79 -0.18 1.57 16 11 H 0.09 1.01 7.52 -51.93 -0.39 0.62 16 12 C -0.13 -1.55 5.43 -26.53 -0.14 -1.70 16 13 C -0.10 -1.47 5.57 -27.08 -0.15 -1.62 16 14 C -0.12 -2.02 2.30 -90.36 -0.21 -2.22 16 15 H 0.06 1.11 7.95 -51.93 -0.41 0.70 16 16 C 0.19 4.43 5.07 -3.43 -0.02 4.42 16 17 N -0.61 -15.26 3.45 -170.41 -0.59 -15.85 16 18 C -0.23 -6.25 10.30 -15.06 -0.16 -6.41 16 19 H 0.08 2.08 7.83 -52.48 -0.41 1.66 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -27.02 10.36 55.49 0.58 -26.45 16 22 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 C 0.14 2.83 6.93 -2.82 -0.02 2.81 16 27 C -0.11 -1.74 2.38 -89.89 -0.21 -1.95 16 28 H 0.07 1.14 6.29 -51.93 -0.33 0.81 16 29 C -0.11 -1.36 5.24 -28.05 -0.15 -1.50 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.75 7.31 -51.93 -0.38 0.37 16 33 H 0.41 4.99 6.67 -40.82 -0.27 4.72 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.92 7.91 -51.93 -0.41 0.51 16 38 H 0.04 0.98 7.60 -51.93 -0.39 0.59 16 39 H 0.05 1.33 7.30 -51.93 -0.38 0.95 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 44 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -30.90 353.48 -7.34 -38.24 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.31 Total: 0.74 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.29 Total: -0.85 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.55 Total: -57.84 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: 0.40 Total: -2.74 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.90 -7.34 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980260501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.066 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds