Wall clock time and date at job start Tue Mar 31 2020 13:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30652 * 128.64223 * 2 1 4 4 O 1.20836 * 109.62063 * 180.02562 * 3 2 1 5 5 N 1.20909 * 115.90663 * 359.69467 * 4 3 2 6 6 C 1.31609 * 109.17737 * 0.49703 * 5 4 3 7 7 C 1.48276 * 128.70730 * 179.82439 * 6 5 4 8 8 O 1.21502 * 119.99841 * 179.67484 * 7 6 5 9 9 N 1.34779 * 120.00303 * 359.67808 * 7 6 5 10 10 C 1.46494 * 119.99770 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.02179 * 33.93109 * 10 9 7 12 12 C 1.52534 * 109.03260 * 274.99623 * 10 9 7 13 13 C 1.53845 * 111.64381 * 293.55419 * 12 10 9 14 14 C 1.51432 * 107.03552 * 302.79708 * 13 12 10 15 15 H 1.08994 * 110.19019 * 305.65314 * 14 13 12 16 16 C 1.52323 * 117.47275 * 178.82222 * 14 13 12 17 17 N 1.48243 * 105.86551 * 214.64213 * 16 14 13 18 18 C 1.36935 * 125.78318 * 183.17045 * 17 16 14 19 19 H 1.08007 * 119.99764 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00344 * 359.96784 * 18 17 16 21 21 N 1.31617 * 119.99478 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00114 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47166 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46925 * 120.00267 * 22 20 18 25 25 H 1.48495 * 109.47468 * 240.00150 * 22 20 18 26 26 C 1.48657 * 108.43235 * 3.18661 * 17 16 14 27 27 C 1.53066 * 103.44684 * 24.37659 * 26 17 16 28 28 H 1.09002 * 110.56438 * 75.67830 * 27 26 17 29 29 C 1.51620 * 117.48930 * 203.78704 * 27 26 17 30 30 H 1.08993 * 109.46836 * 269.97623 * 1 2 3 31 31 H 1.09003 * 109.46985 * 29.97782 * 1 2 3 32 32 H 1.08995 * 109.46563 * 149.97368 * 1 2 3 33 33 H 0.97001 * 119.99909 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.04572 * 172.99900 * 12 10 9 35 35 H 1.08999 * 108.98645 * 54.06884 * 12 10 9 36 36 H 1.08995 * 109.94127 * 183.41715 * 13 12 10 37 37 H 1.09003 * 110.01447 * 62.21641 * 13 12 10 38 38 H 1.09003 * 110.17198 * 333.73935 * 16 14 13 39 39 H 1.08997 * 110.17360 * 95.53662 * 16 14 13 40 40 H 0.97001 * 119.99867 * 179.97438 * 21 20 18 41 41 H 1.09002 * 110.62740 * 265.88573 * 26 17 16 42 42 H 1.09000 * 110.62789 * 142.87191 * 26 17 16 43 43 H 1.09010 * 109.94362 * 296.01571 * 29 27 26 44 44 H 1.09000 * 109.94520 * 57.25797 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0205 0.0000 4 8 3.4653 0.6266 -0.0005 5 7 3.6102 -0.5737 0.0049 6 6 2.4280 -1.1520 -0.0007 7 6 2.1035 -2.5988 -0.0009 8 8 0.9437 -2.9612 -0.0006 9 7 3.0948 -3.5119 -0.0015 10 6 2.7740 -4.9413 -0.0023 11 1 1.8621 -5.1003 -0.5776 12 6 2.5426 -5.4000 1.4339 13 6 3.8331 -5.3261 2.2681 14 6 4.8671 -6.1780 1.5622 15 1 4.4798 -7.1842 1.4023 16 6 6.2578 -6.2504 2.1793 17 7 7.2022 -6.3431 1.0403 18 6 8.5603 -6.4895 1.1362 19 1 9.1617 -6.5476 0.2409 20 6 9.1642 -6.5632 2.3839 21 7 8.4312 -6.4927 3.4748 22 14 11.0169 -6.7622 2.5146 23 1 11.6064 -6.8147 1.1527 24 1 11.5875 -5.6091 3.2564 25 1 11.3298 -8.0203 3.2387 26 6 6.4250 -6.2496 -0.2235 27 6 5.1578 -5.4986 0.1926 28 1 5.3680 -4.4374 0.3259 29 6 3.9183 -5.6920 -0.6589 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3632 -0.8897 -0.5142 33 1 4.0207 -3.2225 -0.0021 34 1 2.1832 -6.4289 1.4251 35 1 1.7860 -4.7630 1.8920 36 1 3.6512 -5.7159 3.2696 37 1 4.1799 -4.2944 2.3283 38 1 6.4581 -5.3509 2.7614 39 1 6.3431 -7.1344 2.8112 40 1 8.8531 -6.5446 4.3468 41 1 6.1774 -7.2435 -0.5964 42 1 6.9779 -5.6839 -0.9734 43 1 4.0926 -5.3044 -1.6627 44 1 3.6617 -6.7502 -0.7072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980260501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:09 Heat of formation + Delta-G solvation = 80.186685 kcal Electronic energy + Delta-G solvation = -27563.493021 eV Core-core repulsion = 23713.772724 eV Total energy + Delta-G solvation = -3849.720297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.99070 -41.69114 -40.12703 -37.29196 -36.26530 -35.85938 -34.78805 -33.48518 -32.13820 -30.75227 -30.26048 -28.05707 -27.14759 -26.51685 -23.72615 -23.58908 -22.57279 -21.99233 -21.44466 -20.22132 -20.16886 -19.65623 -18.77420 -18.25772 -17.21941 -16.78470 -16.45264 -16.00118 -15.68961 -15.60226 -15.17411 -14.99440 -14.71305 -14.53858 -14.42749 -14.30670 -13.69260 -13.68491 -13.44663 -13.03098 -13.02453 -12.92796 -12.84975 -12.68462 -12.48497 -12.46210 -12.31191 -12.00218 -11.88584 -11.77160 -11.51252 -11.40783 -11.40749 -11.03515 -10.83937 -10.70283 -10.17670 -8.88417 -7.83909 -5.18513 -0.39710 0.21744 1.44814 1.45552 1.53581 1.55806 1.77566 2.27515 2.33832 2.49100 2.77910 3.34325 3.52281 3.57808 3.62197 3.66323 3.79195 3.82085 4.08340 4.10718 4.32898 4.44287 4.47082 4.58430 4.60373 4.68627 4.71793 4.74694 4.83879 4.88487 4.99151 5.06915 5.09655 5.10600 5.15921 5.26412 5.34138 5.42494 5.48168 5.55673 5.75427 5.81818 6.17963 6.19424 6.79325 7.09635 7.31114 7.76973 8.43823 9.26649 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.003199 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.735673 B = 8751.757749 C = 9639.698983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.068 3.932 3 N -0.367 5.367 4 O 0.339 5.661 5 N -0.326 5.326 6 C -0.058 4.058 7 C 0.609 3.391 8 O -0.530 6.530 9 N -0.698 5.698 10 C 0.155 3.845 11 H 0.107 0.893 12 C -0.118 4.118 13 C -0.094 4.094 14 C -0.105 4.105 15 H 0.076 0.924 16 C 0.197 3.803 17 N -0.633 5.633 18 C -0.237 4.237 19 H 0.082 0.918 20 C -0.070 4.070 21 N -0.952 5.952 22 Si 0.976 3.024 23 H -0.265 1.265 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.137 3.863 27 C -0.092 4.092 28 H 0.061 0.939 29 C -0.102 4.102 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.408 0.592 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.047 0.953 38 H -0.002 1.002 39 H 0.008 0.992 40 H 0.244 0.756 41 H 0.033 0.967 42 H 0.042 0.958 43 H 0.088 0.912 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.876 9.276 -9.295 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 N -0.095 5.095 4 O 0.115 5.885 5 N -0.045 5.045 6 C -0.223 4.223 7 C 0.392 3.608 8 O -0.405 6.405 9 N -0.350 5.350 10 C 0.053 3.947 11 H 0.125 0.875 12 C -0.157 4.157 13 C -0.132 4.132 14 C -0.124 4.124 15 H 0.094 0.906 16 C 0.073 3.927 17 N -0.360 5.360 18 C -0.366 4.366 19 H 0.100 0.900 20 C -0.263 4.263 21 N -0.601 5.601 22 Si 0.805 3.195 23 H -0.189 1.189 24 H -0.221 1.221 25 H -0.220 1.220 26 C 0.013 3.987 27 C -0.111 4.111 28 H 0.080 0.920 29 C -0.140 4.140 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.245 0.755 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.016 0.984 39 H 0.026 0.974 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.572 9.631 -9.171 22.843 hybrid contribution 1.475 -0.461 0.796 1.738 sum -17.097 9.170 -8.375 21.131 Atomic orbital electron populations 1.20523 0.80650 1.06140 1.05845 1.26758 1.01535 0.84278 0.97230 1.75074 0.91141 1.24328 1.18976 1.85081 1.23648 1.16342 1.63442 1.75411 1.23507 0.93184 1.12435 1.26238 0.88454 0.98821 1.08824 1.16460 0.85617 0.81619 0.77112 1.90790 1.19178 1.79749 1.50819 1.46261 1.09508 1.07055 1.72204 1.20928 0.99525 0.77327 0.96950 0.87489 1.21892 0.96494 1.03071 0.94198 1.21168 0.94653 0.98599 0.98759 1.21982 0.94535 0.99336 0.96562 0.90592 1.20525 0.86538 0.96947 0.88710 1.45453 1.02487 1.86229 1.01858 1.19512 0.82776 1.41529 0.92787 0.90033 1.25628 1.02294 1.03104 0.95262 1.70204 1.34618 1.58464 0.96846 0.85040 0.80061 0.76635 0.77809 1.18918 1.22147 1.22016 1.21482 0.91571 0.97292 0.88351 1.21906 0.94496 0.98626 0.96102 0.92022 1.21247 0.91629 1.02332 0.98760 0.87502 0.87501 0.87977 0.75472 0.88957 0.91639 0.92081 0.93455 0.98413 0.97351 0.94655 0.94911 0.93938 0.89377 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.22 71.24 0.73 -0.15 16 2 C 0.07 1.29 7.79 45.18 0.35 1.65 16 3 N -0.37 -7.69 12.22 -51.77 -0.63 -8.32 16 4 O 0.34 7.60 11.65 140.84 1.64 9.24 16 5 N -0.33 -7.73 12.13 -52.03 -0.63 -8.36 16 6 C -0.06 -1.29 7.56 44.29 0.33 -0.96 16 7 C 0.61 13.89 7.79 86.91 0.68 14.57 16 8 O -0.53 -13.13 15.59 -3.72 -0.06 -13.19 16 9 N -0.70 -15.13 4.64 -447.66 -2.08 -17.21 16 10 C 0.16 3.08 2.68 44.44 0.12 3.19 16 11 H 0.11 1.92 7.52 -2.39 -0.02 1.90 16 12 C -0.12 -2.55 5.43 30.72 0.17 -2.38 16 13 C -0.09 -2.69 5.57 30.37 0.17 -2.52 16 14 C -0.10 -3.59 2.30 -10.63 -0.02 -3.61 16 15 H 0.08 2.46 7.95 -2.39 -0.02 2.44 16 16 C 0.20 9.70 5.07 85.82 0.43 10.13 16 17 N -0.63 -32.38 3.45 -693.07 -2.39 -34.77 16 18 C -0.24 -13.38 10.30 84.03 0.87 -12.52 16 19 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 20 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 21 N -0.95 -58.27 10.36 21.65 0.22 -58.04 16 22 Si 0.98 46.48 29.55 68.60 2.03 48.51 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 26 C 0.14 5.27 6.93 85.99 0.60 5.86 16 27 C -0.09 -2.76 2.38 -10.32 -0.02 -2.79 16 28 H 0.06 1.97 6.29 -2.39 -0.02 1.95 16 29 C -0.10 -2.07 5.24 29.74 0.16 -1.91 16 30 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 1.26 7.31 -2.39 -0.02 1.24 16 33 H 0.41 9.34 6.67 -92.71 -0.62 8.72 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.47 7.91 -2.39 -0.02 1.45 16 38 H 0.00 -0.13 7.60 -2.39 -0.02 -0.15 16 39 H 0.01 0.46 7.30 -2.39 -0.02 0.45 16 40 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.10 1.79 8.00 -2.39 -0.02 1.78 16 Total: -1.00 -69.42 353.48 3.53 -65.89 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.41 Total: 11.27 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 5.02 Total: 4.98 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -5.51 Total: -126.70 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: 1.58 Total: -3.95 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -69.42 3.53 -65.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980260501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.077 kcal (2) G-P(sol) polarization free energy of solvation -69.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds