Wall clock time and date at job start Tue Mar 31 2020 13:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30648 * 128.64166 * 2 1 4 4 O 1.20836 * 109.61944 * 179.97438 * 3 2 1 5 5 N 1.20900 * 115.90866 * 359.73407 * 4 3 2 6 6 C 1.31609 * 109.18057 * 0.43137 * 5 4 3 7 7 C 1.48277 * 128.71236 * 179.88228 * 6 5 4 8 8 O 1.21497 * 120.00047 * 179.67305 * 7 6 5 9 9 N 1.34781 * 119.99814 * 359.67468 * 7 6 5 10 10 C 1.46505 * 119.99387 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.77546 * 34.32073 * 10 9 7 12 12 C 1.53325 * 109.73706 * 273.63349 * 10 9 7 13 13 C 1.52590 * 108.40414 * 176.22482 * 12 10 9 14 14 C 1.53003 * 111.06297 * 62.35041 * 13 12 10 15 15 H 1.08995 * 112.07387 * 73.33969 * 14 13 12 16 16 C 1.55342 * 106.41982 * 197.21797 * 14 13 12 17 17 N 1.47178 * 106.96380 * 91.61935 * 16 14 13 18 18 C 1.36933 * 125.64830 * 180.98952 * 17 16 14 19 19 H 1.07997 * 120.00155 * 173.86631 * 18 17 16 20 20 C 1.38822 * 119.99810 * 353.86674 * 18 17 16 21 21 N 1.31618 * 119.99874 * 6.81176 * 20 18 17 22 22 Si 1.86804 * 119.99664 * 186.81045 * 20 18 17 23 23 H 1.48505 * 109.46793 * 94.98845 * 22 20 18 24 24 H 1.48500 * 109.46959 * 214.98627 * 22 20 18 25 25 H 1.48499 * 109.47189 * 334.98521 * 22 20 18 26 26 C 1.47817 * 108.70211 * 0.95399 * 17 16 14 27 27 C 1.53898 * 104.06312 * 23.35072 * 26 17 16 28 28 H 1.08996 * 108.65463 * 77.07431 * 27 26 17 29 29 C 1.50736 * 113.02185 * 198.53017 * 27 26 17 30 30 H 1.08997 * 109.47218 * 270.02267 * 1 2 3 31 31 H 1.09006 * 109.47227 * 30.03154 * 1 2 3 32 32 H 1.09008 * 109.46699 * 150.02463 * 1 2 3 33 33 H 0.96999 * 120.00019 * 0.02562 * 9 7 6 34 34 H 1.09000 * 109.68300 * 295.95157 * 12 10 9 35 35 H 1.08999 * 109.68033 * 56.49903 * 12 10 9 36 36 H 1.09002 * 109.16324 * 182.76133 * 13 12 10 37 37 H 1.09006 * 109.15953 * 301.99277 * 13 12 10 38 38 H 1.09007 * 109.95857 * 210.98973 * 16 14 13 39 39 H 1.08994 * 109.96635 * 332.23856 * 16 14 13 40 40 H 0.97000 * 119.99522 * 179.97438 * 21 20 18 41 41 H 1.09001 * 110.51006 * 264.70605 * 26 17 16 42 42 H 1.08995 * 110.50854 * 141.99531 * 26 17 16 43 43 H 1.09000 * 109.02820 * 185.70996 * 29 27 26 44 44 H 1.09004 * 109.02623 * 304.54326 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6266 0.0005 5 7 3.6102 -0.5737 0.0059 6 6 2.4280 -1.1520 0.0007 7 6 2.1034 -2.5988 0.0017 8 8 0.9437 -2.9613 0.0021 9 7 3.0948 -3.5119 0.0022 10 6 2.7740 -4.9413 0.0037 11 1 1.8665 -5.1163 -0.5740 12 6 2.5720 -5.4251 1.4446 13 6 2.1479 -6.8904 1.4058 14 6 3.2393 -7.7624 0.7818 15 1 4.0884 -7.8977 1.4516 16 6 2.5593 -9.1027 0.3889 17 7 2.1013 -8.9601 -1.0025 18 6 1.4325 -9.9126 -1.7241 19 1 1.0512 -9.6769 -2.7066 20 6 1.2447 -11.1812 -1.1926 21 7 1.5887 -11.4303 0.0532 22 14 0.5035 -12.5346 -2.2455 23 1 1.5924 -13.3382 -2.8571 24 1 -0.3440 -13.4123 -1.3990 25 1 -0.3269 -11.9291 -3.3174 26 6 2.4820 -7.6182 -1.4917 27 6 3.6643 -7.2141 -0.5931 28 1 4.5554 -7.7434 -0.9304 29 6 3.9329 -5.7309 -0.6039 30 1 -0.3633 0.0004 1.0276 31 1 -0.3634 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5135 33 1 4.0206 -3.2225 0.0022 34 1 3.5056 -5.3278 1.9988 35 1 1.7953 -4.8308 1.9258 36 1 1.9532 -7.2335 2.4220 37 1 1.2359 -6.9833 0.8161 38 1 3.2772 -9.9197 0.4625 39 1 1.7087 -9.2942 1.0429 40 1 1.4571 -12.3167 0.4246 41 1 1.6545 -6.9190 -1.3716 42 1 2.7942 -7.6665 -2.5349 43 1 4.8386 -5.5296 -0.0318 44 1 4.0843 -5.4047 -1.6329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980260506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:15 Heat of formation + Delta-G solvation = 94.421512 kcal Electronic energy + Delta-G solvation = -27232.848068 eV Core-core repulsion = 23383.745039 eV Total energy + Delta-G solvation = -3849.103029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -47.23508 -40.38586 -38.99731 -35.89245 -35.42816 -35.04998 -33.48104 -31.68282 -30.95661 -29.83230 -28.97961 -26.63466 -25.72878 -24.66066 -22.94642 -22.24696 -21.89616 -20.92000 -19.93579 -19.40776 -19.09431 -18.07064 -17.34863 -16.71199 -16.55800 -15.37318 -15.12426 -14.75018 -14.48629 -14.15109 -13.92787 -13.87539 -13.78607 -13.68443 -13.50440 -12.64221 -12.45366 -12.33632 -12.24546 -12.12260 -11.79084 -11.66523 -11.50910 -11.18540 -11.04005 -11.00146 -10.70957 -10.69918 -10.61286 -10.54953 -9.99286 -9.94195 -9.70231 -9.58138 -9.47560 -9.15911 -8.55470 -6.78832 -5.70373 -3.02047 0.40953 0.94884 2.35624 2.66691 3.01489 3.09073 3.41254 3.46672 3.48500 3.56280 4.31017 4.47579 4.51826 4.72726 4.81249 4.85531 5.07761 5.20861 5.22171 5.33203 5.38763 5.50824 5.56241 5.61118 5.66071 5.73599 5.78583 5.85456 5.99325 6.11916 6.16458 6.29998 6.35076 6.38967 6.51200 6.60055 6.78101 6.90521 6.99541 7.10609 7.58647 7.64815 7.72459 7.85003 8.07375 8.27677 9.24243 9.84594 10.51920 11.41703 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.002617 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.802207 B =10698.214239 C =11041.825958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.062 3.938 3 N -0.359 5.359 4 O 0.341 5.659 5 N -0.322 5.322 6 C -0.041 4.041 7 C 0.604 3.396 8 O -0.506 6.506 9 N -0.703 5.703 10 C 0.143 3.857 11 H 0.101 0.899 12 C -0.124 4.124 13 C -0.104 4.104 14 C -0.113 4.113 15 H 0.073 0.927 16 C 0.183 3.817 17 N -0.606 5.606 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.139 3.861 27 C -0.093 4.093 28 H 0.073 0.927 29 C -0.107 4.107 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.404 0.596 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.251 0.749 41 H 0.020 0.980 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 22.035 2.381 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 N -0.085 5.085 4 O 0.116 5.884 5 N -0.043 5.043 6 C -0.206 4.206 7 C 0.385 3.615 8 O -0.379 6.379 9 N -0.353 5.353 10 C 0.040 3.960 11 H 0.119 0.881 12 C -0.163 4.163 13 C -0.142 4.142 14 C -0.132 4.132 15 H 0.092 0.908 16 C 0.058 3.942 17 N -0.332 5.332 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.013 3.987 27 C -0.113 4.113 28 H 0.092 0.908 29 C -0.146 4.146 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.239 0.761 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.165 22.194 2.402 22.708 hybrid contribution -0.472 -1.143 -0.478 1.326 sum 3.693 21.050 1.924 21.458 Atomic orbital electron populations 1.20375 0.82801 1.05416 1.04869 1.26278 1.00455 0.85099 0.98513 1.75075 0.91137 1.23994 1.18276 1.85060 1.23355 1.16611 1.63371 1.75351 1.23086 0.92893 1.12944 1.26195 0.88089 0.98645 1.07717 1.16450 0.85893 0.81345 0.77779 1.90857 1.18772 1.79294 1.49015 1.46012 1.09141 1.06985 1.73171 1.21297 1.00260 0.76401 0.98030 0.88098 1.21916 1.01366 0.97701 0.95314 1.21472 0.99523 0.92162 1.01076 1.22467 0.97281 0.98472 0.94969 0.90817 1.21452 0.96806 0.90376 0.85533 1.44560 1.66762 1.11298 1.10594 1.19062 1.28066 0.89804 0.98583 0.90528 1.24813 1.01579 0.97466 0.96566 1.69970 1.53445 1.20912 1.12467 0.86141 0.78361 0.82218 0.79339 1.21692 1.21813 1.20663 1.21504 0.93328 0.88317 0.95596 1.21367 0.99969 0.92549 0.97426 0.90817 1.21151 0.96945 0.95688 1.00796 0.88720 0.89395 0.87774 0.76078 0.92022 0.92017 0.92079 0.91064 0.94019 0.93670 0.93817 0.96261 0.94506 0.91720 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.22 36.01 0.37 -0.18 16 2 C 0.06 0.60 7.79 -79.33 -0.62 -0.02 16 3 N -0.36 -3.53 12.22 33.76 0.41 -3.11 16 4 O 0.34 3.28 11.65 27.27 0.32 3.59 16 5 N -0.32 -3.22 12.13 33.50 0.41 -2.81 16 6 C -0.04 -0.43 7.56 -80.07 -0.61 -1.04 16 7 C 0.60 7.31 7.83 -12.13 -0.09 7.22 16 8 O -0.51 -7.45 15.62 5.37 0.08 -7.37 16 9 N -0.70 -7.64 5.09 -54.54 -0.28 -7.91 16 10 C 0.14 1.82 2.30 -67.85 -0.16 1.67 16 11 H 0.10 1.54 6.23 -51.93 -0.32 1.22 16 12 C -0.12 -1.64 5.53 -26.77 -0.15 -1.79 16 13 C -0.10 -1.68 4.63 -26.94 -0.12 -1.80 16 14 C -0.11 -1.97 3.61 -88.85 -0.32 -2.29 16 15 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 16 C 0.18 4.31 4.67 -2.43 -0.01 4.30 16 17 N -0.61 -15.21 3.41 -169.62 -0.58 -15.78 16 18 C -0.23 -6.31 10.27 -15.06 -0.15 -6.47 16 19 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 20 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 21 N -0.92 -26.97 10.37 55.49 0.58 -26.40 16 22 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.14 2.78 6.19 -2.85 -0.02 2.76 16 27 C -0.09 -1.52 2.81 -90.76 -0.26 -1.77 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 29 C -0.11 -1.32 4.86 -27.95 -0.14 -1.46 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.82 7.31 -51.92 -0.38 0.44 16 33 H 0.40 3.57 8.47 -40.82 -0.35 3.23 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.33 7.15 -51.93 -0.37 0.96 16 38 H 0.04 1.10 7.37 -51.92 -0.38 0.72 16 39 H 0.05 1.19 7.15 -51.93 -0.37 0.82 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.02 0.39 6.15 -51.93 -0.32 0.08 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -30.96 352.51 -7.41 -38.37 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.27 Total: 0.16 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.37 Total: -1.19 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.54 Total: -56.02 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: 0.40 Total: -3.77 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.96 -7.41 -38.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980260506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.796 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds