Wall clock time and date at job start Tue Mar 31 2020 13:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30648 * 128.64166 * 2 1 4 4 O 1.20836 * 109.61944 * 179.97438 * 3 2 1 5 5 N 1.20900 * 115.90866 * 359.73407 * 4 3 2 6 6 C 1.31609 * 109.18057 * 0.43137 * 5 4 3 7 7 C 1.48277 * 128.71236 * 179.88228 * 6 5 4 8 8 O 1.21497 * 120.00047 * 179.67305 * 7 6 5 9 9 N 1.34781 * 119.99814 * 359.67468 * 7 6 5 10 10 C 1.46505 * 119.99387 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.77546 * 34.32073 * 10 9 7 12 12 C 1.53325 * 109.73706 * 273.63349 * 10 9 7 13 13 C 1.52590 * 108.40414 * 176.22482 * 12 10 9 14 14 C 1.53003 * 111.06297 * 62.35041 * 13 12 10 15 15 H 1.08995 * 112.07387 * 73.33969 * 14 13 12 16 16 C 1.55342 * 106.41982 * 197.21797 * 14 13 12 17 17 N 1.47178 * 106.96380 * 91.61935 * 16 14 13 18 18 C 1.36933 * 125.64830 * 180.98952 * 17 16 14 19 19 H 1.07997 * 120.00155 * 173.86631 * 18 17 16 20 20 C 1.38822 * 119.99810 * 353.86674 * 18 17 16 21 21 N 1.31618 * 119.99874 * 6.81176 * 20 18 17 22 22 Si 1.86804 * 119.99664 * 186.81045 * 20 18 17 23 23 H 1.48505 * 109.46793 * 94.98845 * 22 20 18 24 24 H 1.48500 * 109.46959 * 214.98627 * 22 20 18 25 25 H 1.48499 * 109.47189 * 334.98521 * 22 20 18 26 26 C 1.47817 * 108.70211 * 0.95399 * 17 16 14 27 27 C 1.53898 * 104.06312 * 23.35072 * 26 17 16 28 28 H 1.08996 * 108.65463 * 77.07431 * 27 26 17 29 29 C 1.50736 * 113.02185 * 198.53017 * 27 26 17 30 30 H 1.08997 * 109.47218 * 270.02267 * 1 2 3 31 31 H 1.09006 * 109.47227 * 30.03154 * 1 2 3 32 32 H 1.09008 * 109.46699 * 150.02463 * 1 2 3 33 33 H 0.96999 * 120.00019 * 0.02562 * 9 7 6 34 34 H 1.09000 * 109.68300 * 295.95157 * 12 10 9 35 35 H 1.08999 * 109.68033 * 56.49903 * 12 10 9 36 36 H 1.09002 * 109.16324 * 182.76133 * 13 12 10 37 37 H 1.09006 * 109.15953 * 301.99277 * 13 12 10 38 38 H 1.09007 * 109.95857 * 210.98973 * 16 14 13 39 39 H 1.08994 * 109.96635 * 332.23856 * 16 14 13 40 40 H 0.97000 * 119.99522 * 179.97438 * 21 20 18 41 41 H 1.09001 * 110.51006 * 264.70605 * 26 17 16 42 42 H 1.08995 * 110.50854 * 141.99531 * 26 17 16 43 43 H 1.09000 * 109.02820 * 185.70996 * 29 27 26 44 44 H 1.09004 * 109.02623 * 304.54326 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6266 0.0005 5 7 3.6102 -0.5737 0.0059 6 6 2.4280 -1.1520 0.0007 7 6 2.1034 -2.5988 0.0017 8 8 0.9437 -2.9613 0.0021 9 7 3.0948 -3.5119 0.0022 10 6 2.7740 -4.9413 0.0037 11 1 1.8665 -5.1163 -0.5740 12 6 2.5720 -5.4251 1.4446 13 6 2.1479 -6.8904 1.4058 14 6 3.2393 -7.7624 0.7818 15 1 4.0884 -7.8977 1.4516 16 6 2.5593 -9.1027 0.3889 17 7 2.1013 -8.9601 -1.0025 18 6 1.4325 -9.9126 -1.7241 19 1 1.0512 -9.6769 -2.7066 20 6 1.2447 -11.1812 -1.1926 21 7 1.5887 -11.4303 0.0532 22 14 0.5035 -12.5346 -2.2455 23 1 1.5924 -13.3382 -2.8571 24 1 -0.3440 -13.4123 -1.3990 25 1 -0.3269 -11.9291 -3.3174 26 6 2.4820 -7.6182 -1.4917 27 6 3.6643 -7.2141 -0.5931 28 1 4.5554 -7.7434 -0.9304 29 6 3.9329 -5.7309 -0.6039 30 1 -0.3633 0.0004 1.0276 31 1 -0.3634 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5135 33 1 4.0206 -3.2225 0.0022 34 1 3.5056 -5.3278 1.9988 35 1 1.7953 -4.8308 1.9258 36 1 1.9532 -7.2335 2.4220 37 1 1.2359 -6.9833 0.8161 38 1 3.2772 -9.9197 0.4625 39 1 1.7087 -9.2942 1.0429 40 1 1.4571 -12.3167 0.4246 41 1 1.6545 -6.9190 -1.3716 42 1 2.7942 -7.6665 -2.5349 43 1 4.8386 -5.5296 -0.0318 44 1 4.0843 -5.4047 -1.6329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980260506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:14 Heat of formation + Delta-G solvation = 74.118313 kcal Electronic energy + Delta-G solvation = -27233.728481 eV Core-core repulsion = 23383.745039 eV Total energy + Delta-G solvation = -3849.983442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -47.99813 -41.49922 -40.28127 -37.15541 -36.26597 -35.88245 -34.99496 -33.31642 -32.29408 -30.82304 -30.28627 -27.92462 -27.18042 -26.19721 -23.74758 -23.60660 -23.06117 -22.01929 -21.56894 -20.17136 -20.13318 -19.27045 -18.74573 -18.09662 -17.64782 -16.77982 -16.48733 -16.13774 -15.64823 -15.35648 -15.15179 -15.02887 -14.95661 -14.44530 -14.43419 -14.07381 -14.02575 -13.73281 -13.23819 -13.18114 -13.03595 -12.94827 -12.87134 -12.73826 -12.50472 -12.30977 -12.21190 -12.14158 -11.82252 -11.77672 -11.65343 -11.41004 -11.22294 -11.07545 -10.89713 -10.66179 -10.20152 -8.85013 -7.85201 -5.18624 -0.40730 0.20982 1.44534 1.45942 1.46485 1.55087 1.75344 2.25482 2.34571 2.49508 2.76115 3.32294 3.54719 3.61804 3.65182 3.71543 3.76815 3.99973 4.06682 4.13494 4.19901 4.33635 4.50253 4.54282 4.57848 4.61422 4.68512 4.71993 4.75631 4.92629 5.00877 5.06701 5.10132 5.12632 5.22465 5.29802 5.36452 5.44999 5.49456 5.56055 5.75254 5.82648 6.20904 6.22060 6.84419 7.12083 7.31179 7.79822 8.45322 9.25355 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.002617 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.802207 B =10698.214239 C =11041.825958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.064 3.936 3 N -0.363 5.363 4 O 0.348 5.652 5 N -0.316 5.316 6 C -0.053 4.053 7 C 0.606 3.394 8 O -0.537 6.537 9 N -0.689 5.689 10 C 0.149 3.851 11 H 0.073 0.927 12 C -0.113 4.113 13 C -0.097 4.097 14 C -0.097 4.097 15 H 0.100 0.900 16 C 0.190 3.810 17 N -0.628 5.628 18 C -0.242 4.242 19 H 0.078 0.922 20 C -0.066 4.066 21 N -0.949 5.949 22 Si 0.975 3.025 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.269 1.269 26 C 0.133 3.867 27 C -0.077 4.077 28 H 0.075 0.925 29 C -0.098 4.098 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.418 0.582 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.035 0.965 38 H 0.004 0.996 39 H 0.005 0.995 40 H 0.246 0.754 41 H 0.019 0.981 42 H 0.039 0.961 43 H 0.100 0.900 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 24.276 2.124 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 N -0.090 5.090 4 O 0.121 5.879 5 N -0.035 5.035 6 C -0.218 4.218 7 C 0.388 3.612 8 O -0.412 6.412 9 N -0.340 5.340 10 C 0.046 3.954 11 H 0.091 0.909 12 C -0.152 4.152 13 C -0.135 4.135 14 C -0.116 4.116 15 H 0.118 0.882 16 C 0.065 3.935 17 N -0.354 5.354 18 C -0.371 4.371 19 H 0.096 0.904 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.803 3.197 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.194 1.194 26 C 0.008 3.992 27 C -0.097 4.097 28 H 0.093 0.907 29 C -0.136 4.136 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.256 0.744 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.055 0.945 41 H 0.037 0.963 42 H 0.057 0.943 43 H 0.118 0.882 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.600 24.468 2.125 25.190 hybrid contribution -0.948 -1.797 -0.414 2.074 sum 4.651 22.670 1.711 23.205 Atomic orbital electron populations 1.20492 0.81347 1.05862 1.05772 1.26645 1.01376 0.84581 0.97601 1.75094 0.91129 1.23992 1.18794 1.85056 1.23404 1.16379 1.63046 1.75333 1.22771 0.93022 1.12393 1.25987 0.88708 0.98093 1.08996 1.16563 0.85537 0.81958 0.77102 1.90852 1.20058 1.79902 1.50430 1.45780 1.09721 1.05935 1.72586 1.21040 0.99508 0.77560 0.97315 0.90920 1.21807 1.02453 0.94910 0.95985 1.21322 0.97584 0.94325 1.00269 1.22374 0.97867 0.94946 0.96386 0.88198 1.21224 0.94782 0.92918 0.84582 1.44887 1.66517 1.12709 1.11334 1.19442 1.27970 0.90806 0.98859 0.90392 1.25642 1.02798 0.99719 0.97762 1.70195 1.54848 1.20836 1.13932 0.85107 0.77571 0.79150 0.77829 1.21317 1.22189 1.19408 1.21706 0.94976 0.85989 0.96553 1.21261 0.97919 0.95503 0.95022 0.90695 1.21067 0.97839 0.92147 1.02547 0.87510 0.87497 0.88701 0.74421 0.89254 0.92405 0.91927 0.94588 0.97749 0.97672 0.94473 0.96313 0.94298 0.88172 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.22 71.24 0.73 -0.24 16 2 C 0.06 1.11 7.79 45.18 0.35 1.46 16 3 N -0.36 -6.42 12.22 -51.80 -0.63 -7.05 16 4 O 0.35 5.94 11.65 140.86 1.64 7.58 16 5 N -0.32 -5.57 12.13 -52.03 -0.63 -6.20 16 6 C -0.05 -1.02 7.56 44.29 0.34 -0.69 16 7 C 0.61 13.63 7.83 86.91 0.68 14.31 16 8 O -0.54 -15.44 15.62 -3.71 -0.06 -15.50 16 9 N -0.69 -13.04 5.09 -444.75 -2.26 -15.30 16 10 C 0.15 3.46 2.30 45.04 0.10 3.57 16 11 H 0.07 2.16 6.23 -2.39 -0.01 2.15 16 12 C -0.11 -2.72 5.53 30.57 0.17 -2.55 16 13 C -0.10 -3.07 4.63 30.46 0.14 -2.93 16 14 C -0.10 -3.30 3.61 -9.65 -0.03 -3.34 16 15 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 16 C 0.19 9.33 4.67 87.05 0.41 9.74 16 17 N -0.63 -32.55 3.41 -690.54 -2.35 -34.90 16 18 C -0.24 -13.84 10.27 84.04 0.86 -12.98 16 19 H 0.08 4.31 7.84 -2.91 -0.02 4.28 16 20 C -0.07 -3.84 5.48 84.86 0.47 -3.38 16 21 N -0.95 -58.02 10.37 21.65 0.22 -57.80 16 22 Si 0.97 46.62 29.56 68.60 2.03 48.65 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 C 0.13 5.32 6.19 86.43 0.53 5.85 16 27 C -0.08 -2.37 2.81 -10.89 -0.03 -2.40 16 28 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 29 C -0.10 -2.05 4.86 29.80 0.14 -1.90 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.09 1.41 7.31 -2.38 -0.02 1.40 16 33 H 0.42 5.76 8.47 -92.71 -0.79 4.98 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.04 1.39 7.15 -2.38 -0.02 1.37 16 38 H 0.00 0.24 7.37 -2.38 -0.02 0.22 16 39 H 0.01 0.28 7.15 -2.39 -0.02 0.27 16 40 H 0.25 14.62 8.31 -92.71 -0.77 13.84 16 41 H 0.02 0.77 6.15 -2.39 -0.01 0.76 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -70.67 352.51 3.06 -67.61 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.25 Total: 8.40 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 4.86 Total: 4.52 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -5.66 Total: -121.26 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 1.58 Total: -7.92 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -70.67 3.06 -67.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980260506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.727 kcal (2) G-P(sol) polarization free energy of solvation -70.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds