Wall clock time and date at job start Tue Mar 31 2020 13:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30642 * 128.64509 * 2 1 4 4 O 1.20833 * 109.62564 * 180.23891 * 3 2 1 5 5 N 1.20907 * 115.90613 * 359.73750 * 4 3 2 6 6 C 1.31603 * 109.17693 * 359.97438 * 5 4 3 7 7 C 1.48279 * 128.71266 * 179.97438 * 6 5 4 8 8 O 1.21500 * 120.00075 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99827 * 0.03336 * 7 6 5 10 10 C 1.48112 * 127.84230 * 179.97438 * 9 7 6 11 11 C 1.54315 * 104.71486 * 140.22256 * 10 9 7 12 12 C 1.53004 * 112.07686 * 146.94091 * 11 10 9 13 13 C 1.53757 * 109.08329 * 271.63934 * 11 10 9 14 14 N 1.47200 * 106.40470 * 94.28403 * 13 11 10 15 15 C 1.36943 * 126.70374 * 211.29542 * 14 13 11 16 16 H 1.08003 * 119.99648 * 165.69720 * 15 14 13 17 17 C 1.38804 * 119.99839 * 345.69736 * 15 14 13 18 18 N 1.31622 * 120.00247 * 350.70109 * 17 15 14 19 19 Si 1.86810 * 119.99877 * 170.70063 * 17 15 14 20 20 H 1.48493 * 109.47005 * 90.00021 * 19 17 15 21 21 H 1.48501 * 109.47040 * 209.99959 * 19 17 15 22 22 H 1.48500 * 109.46752 * 329.99813 * 19 17 15 23 23 C 1.47206 * 106.59316 * 31.56290 * 14 13 11 24 24 C 1.54032 * 106.26666 * 328.37046 * 23 14 13 25 25 C 1.52994 * 112.77347 * 141.67274 * 24 23 14 26 26 C 1.48108 * 127.84708 * 359.97438 * 9 7 6 27 27 H 1.08999 * 109.47535 * 270.16257 * 1 2 3 28 28 H 1.08999 * 109.47285 * 30.16082 * 1 2 3 29 29 H 1.09003 * 109.47557 * 150.16405 * 1 2 3 30 30 H 1.08998 * 110.39177 * 21.41338 * 10 9 7 31 31 H 1.09000 * 110.38972 * 259.02464 * 10 9 7 32 32 H 1.09001 * 109.46886 * 182.01000 * 12 11 10 33 33 H 1.08996 * 109.47143 * 302.01060 * 12 11 10 34 34 H 1.08997 * 109.46772 * 62.01513 * 12 11 10 35 35 H 1.09008 * 110.06527 * 335.05529 * 13 11 10 36 36 H 1.09000 * 110.07683 * 213.52638 * 13 11 10 37 37 H 0.97001 * 120.00021 * 180.02562 * 18 17 15 38 38 H 1.09005 * 110.06738 * 87.68752 * 23 14 13 39 39 H 1.09000 * 110.06826 * 209.20691 * 23 14 13 40 40 H 1.08997 * 109.47368 * 301.38776 * 25 24 23 41 41 H 1.09006 * 109.46616 * 61.38295 * 25 24 23 42 42 H 1.08997 * 109.47115 * 181.37965 * 25 24 23 43 43 H 1.09003 * 110.39187 * 338.59526 * 26 9 7 44 44 H 1.09002 * 110.39119 * 100.86048 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3228 1.0203 0.0000 4 8 3.4651 0.6266 -0.0047 5 7 3.6101 -0.5738 -0.0034 6 6 2.4279 -1.1520 0.0038 7 6 2.1033 -2.5988 0.0076 8 8 0.9436 -2.9612 0.0138 9 7 3.0946 -3.5119 0.0042 10 6 2.9705 -4.9878 0.0075 11 6 4.0758 -5.4762 -0.9522 12 6 4.6574 -6.8241 -0.5210 13 6 3.5156 -5.5201 -2.3834 14 7 3.8698 -4.2353 -3.0082 15 6 3.1537 -3.5647 -3.9636 16 1 3.3811 -2.5320 -4.1832 17 6 2.1356 -4.2124 -4.6498 18 7 1.9766 -5.5123 -4.5182 19 14 0.9913 -3.2390 -5.7601 20 1 1.5527 -3.1963 -7.1341 21 1 -0.3424 -3.8915 -5.7904 22 1 0.8537 -1.8556 -5.2382 23 6 5.1475 -3.8151 -2.4100 24 6 5.1464 -4.3543 -0.9671 25 6 6.5202 -4.8608 -0.5232 26 6 4.5553 -3.2673 -0.0038 27 1 -0.3634 0.0029 1.0276 28 1 -0.3634 0.8885 -0.5163 29 1 -0.3634 -0.8914 -0.5113 30 1 1.9890 -5.2872 -0.3599 31 1 3.1377 -5.3807 1.0104 32 1 5.4558 -7.1109 -1.2055 33 1 5.0576 -6.7406 0.4894 34 1 3.8733 -7.5809 -0.5400 35 1 2.4321 -5.6373 -2.3575 36 1 3.9680 -6.3427 -2.9373 37 1 1.2653 -5.9649 -4.9980 38 1 5.9805 -4.2401 -2.9701 39 1 5.2174 -2.7273 -2.4028 40 1 6.8503 -5.6526 -1.1955 41 1 7.2362 -4.0394 -0.5500 42 1 6.4528 -5.2509 0.4923 43 1 4.7709 -2.2670 -0.3796 44 1 4.9668 -3.3926 0.9978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982849893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:12 Heat of formation + Delta-G solvation = 98.686674 kcal Electronic energy + Delta-G solvation = -29261.046398 eV Core-core repulsion = 25412.128321 eV Total energy + Delta-G solvation = -3848.918078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.00789 -41.81475 -39.91540 -36.62742 -36.26821 -35.83430 -34.63556 -33.12703 -32.51462 -30.57741 -28.61684 -28.09819 -27.04149 -26.56375 -25.98286 -24.08079 -23.52106 -21.65355 -21.34629 -20.19481 -19.44239 -19.12245 -18.57246 -18.02936 -17.10888 -17.05319 -16.62545 -15.66464 -15.55332 -15.34771 -15.01727 -14.91386 -14.50763 -14.49521 -14.45487 -14.32357 -13.83818 -13.69414 -13.40294 -13.20827 -13.02434 -12.92216 -12.83090 -12.76488 -12.56114 -12.44697 -12.30965 -12.11413 -11.97654 -11.83904 -11.54928 -11.46625 -11.41799 -11.20861 -11.07550 -10.75288 -9.84145 -8.84495 -7.95636 -5.27949 -0.38819 0.18363 1.34055 1.35920 1.36446 1.43831 1.84274 2.23197 2.35017 2.40830 2.69646 3.22718 3.35830 3.45578 3.55325 3.64631 3.72238 3.87436 4.01956 4.11795 4.30677 4.39506 4.52576 4.56552 4.58963 4.62769 4.68865 4.76080 4.81946 4.85325 4.96097 5.01558 5.06597 5.07954 5.21247 5.25241 5.32445 5.38990 5.42971 5.50459 5.62374 5.77816 6.17972 6.29566 6.73912 7.03228 7.31220 7.71684 8.42897 9.16763 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009633 B = 0.007230 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.892214 B = 3871.724210 C = 5518.612259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.062 3.938 3 N -0.360 5.360 4 O 0.348 5.652 5 N -0.314 5.314 6 C -0.049 4.049 7 C 0.619 3.381 8 O -0.552 6.552 9 N -0.592 5.592 10 C 0.128 3.872 11 C -0.090 4.090 12 C -0.116 4.116 13 C 0.190 3.810 14 N -0.611 5.611 15 C -0.234 4.234 16 H 0.063 0.937 17 C -0.055 4.055 18 N -0.939 5.939 19 Si 0.961 3.039 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.139 3.861 24 C -0.071 4.071 25 C -0.116 4.116 26 C 0.108 3.892 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.030 0.970 36 H -0.006 1.006 37 H 0.247 0.753 38 H 0.019 0.981 39 H 0.032 0.968 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.216 4.929 15.142 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 N -0.087 5.087 4 O 0.121 5.879 5 N -0.034 5.034 6 C -0.214 4.214 7 C 0.405 3.595 8 O -0.429 6.429 9 N -0.323 5.323 10 C 0.006 3.994 11 C -0.092 4.092 12 C -0.173 4.173 13 C 0.065 3.935 14 N -0.334 5.334 15 C -0.363 4.363 16 H 0.081 0.919 17 C -0.249 4.249 18 N -0.587 5.587 19 Si 0.790 3.210 20 H -0.207 1.207 21 H -0.217 1.217 22 H -0.204 1.204 23 C 0.014 3.986 24 C -0.073 4.073 25 C -0.174 4.174 26 C -0.015 4.015 27 H 0.134 0.866 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.011 0.989 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.298 5.466 14.982 17.146 hybrid contribution -1.657 -0.208 -1.548 2.277 sum 4.641 5.258 13.434 15.154 Atomic orbital electron populations 1.20464 0.81280 1.05425 1.05996 1.26598 1.01439 0.84518 0.97829 1.75018 0.91058 1.23763 1.18898 1.85017 1.23419 1.16551 1.62873 1.75333 1.22601 0.92747 1.12685 1.25911 0.88893 0.97898 1.08669 1.16106 0.84301 0.81825 0.77284 1.90762 1.19598 1.79958 1.52613 1.48484 1.07428 1.07295 1.69058 1.22541 0.98964 0.77564 1.00310 1.22507 0.94491 0.96978 0.95244 1.21622 1.00538 0.92727 1.02452 1.21000 0.97206 0.86575 0.88759 1.44543 1.21360 1.23095 1.44433 1.19081 1.12022 0.93405 1.11792 0.91923 1.25506 1.01989 0.96415 1.00999 1.70092 1.34122 1.07927 1.46519 0.85347 0.78599 0.77921 0.79153 1.20660 1.21744 1.20390 1.21582 0.87940 0.96698 0.92398 1.22797 0.96616 0.93840 0.94049 1.21614 0.91898 1.01427 1.02439 1.23312 0.77506 0.99895 1.00738 0.86572 0.87388 0.89813 0.93079 0.87378 0.91879 0.88917 0.92812 0.95200 0.98855 0.94333 0.96330 0.94965 0.91863 0.91150 0.89329 0.89817 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.72 10.22 71.23 0.73 -1.00 16 2 C 0.06 1.81 7.79 45.17 0.35 2.16 16 3 N -0.36 -10.11 12.22 -51.81 -0.63 -10.74 16 4 O 0.35 9.74 11.65 140.85 1.64 11.38 16 5 N -0.31 -9.62 9.64 -52.05 -0.50 -10.12 16 6 C -0.05 -1.67 7.38 44.29 0.33 -1.34 16 7 C 0.62 24.00 7.94 86.92 0.69 24.69 16 8 O -0.55 -24.22 16.22 -3.71 -0.06 -24.28 16 9 N -0.59 -20.71 3.32 -806.28 -2.68 -23.39 16 10 C 0.13 4.24 6.05 86.52 0.52 4.76 16 11 C -0.09 -2.98 1.06 -50.77 -0.05 -3.03 16 12 C -0.12 -2.82 7.50 71.98 0.54 -2.28 16 13 C 0.19 9.14 4.70 86.50 0.41 9.55 16 14 N -0.61 -31.34 3.38 -694.93 -2.35 -33.70 16 15 C -0.23 -13.55 10.28 84.03 0.86 -12.69 16 16 H 0.06 3.62 7.85 -2.91 -0.02 3.59 16 17 C -0.05 -3.23 5.38 84.86 0.46 -2.78 16 18 N -0.94 -57.76 10.87 21.65 0.24 -57.52 16 19 Si 0.96 48.03 29.56 68.60 2.03 50.06 16 20 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 22 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 23 C 0.14 5.62 6.35 86.59 0.55 6.17 16 24 C -0.07 -2.10 1.15 -49.78 -0.06 -2.16 16 25 C -0.12 -2.31 7.65 71.98 0.55 -1.76 16 26 C 0.11 3.04 5.88 87.41 0.51 3.56 16 27 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.08 2.34 7.32 -2.39 -0.02 2.32 16 30 H 0.05 2.07 7.16 -2.39 -0.02 2.06 16 31 H 0.11 2.67 7.97 -2.39 -0.02 2.66 16 32 H 0.06 1.54 7.10 -2.39 -0.02 1.53 16 33 H 0.09 1.55 7.16 -2.39 -0.02 1.53 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.03 1.69 6.02 -2.38 -0.01 1.67 16 36 H -0.01 -0.34 7.88 -2.39 -0.02 -0.36 16 37 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.02 0.76 7.93 -2.38 -0.02 0.74 16 39 H 0.03 1.32 7.47 -2.39 -0.02 1.30 16 40 H 0.06 1.31 7.09 -2.39 -0.02 1.29 16 41 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.09 1.26 7.16 -2.39 -0.02 1.24 16 43 H 0.08 2.56 5.04 -2.39 -0.01 2.54 16 44 H 0.11 2.24 8.00 -2.39 -0.02 2.22 16 Total: -1.00 -74.05 349.53 5.10 -68.96 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 1.03 Total: 5.49 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 6.39 Total: 23.87 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -5.93 Total: -135.48 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 1.58 Total: -12.90 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -74.05 5.10 -68.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982849893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.643 kcal (2) G-P(sol) polarization free energy of solvation -74.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds