Wall clock time and date at job start Tue Mar 31 2020 13:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35279 * 117.00076 * 2 1 4 4 N 1.32764 * 120.61724 * 0.26638 * 3 2 1 5 5 C 1.31734 * 120.87484 * 180.26225 * 4 3 2 6 6 C 1.50699 * 118.90094 * 179.74929 * 5 4 3 7 7 N 1.31932 * 122.19659 * 359.72559 * 5 4 3 8 8 C 1.32190 * 121.13909 * 359.97438 * 7 5 4 9 9 C 1.39806 * 118.98076 * 0.02562 * 8 7 5 10 10 C 1.47533 * 120.98058 * 179.97438 * 9 8 7 11 11 O 1.21587 * 120.00273 * 144.76968 * 10 9 8 12 12 N 1.34777 * 120.00025 * 324.76045 * 10 9 8 13 13 C 1.47428 * 125.64383 * 354.75956 * 12 10 9 14 14 C 1.54914 * 104.82741 * 204.08709 * 13 12 10 15 15 H 1.09003 * 110.99912 * 204.91851 * 14 13 12 16 16 N 1.46494 * 111.00470 * 81.06156 * 14 13 12 17 17 C 1.36945 * 119.99636 * 86.45601 * 16 14 13 18 18 H 1.07994 * 119.99789 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99763 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99728 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00165 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47233 * 89.99748 * 21 19 17 23 23 H 1.48501 * 109.47101 * 210.00163 * 21 19 17 24 24 H 1.48501 * 109.47034 * 329.99993 * 21 19 17 25 25 C 1.55159 * 101.58131 * 322.98831 * 14 13 12 26 26 C 1.47020 * 125.65038 * 174.70948 * 12 10 9 27 27 H 1.08996 * 110.01023 * 59.49315 * 26 12 10 28 28 C 1.53010 * 109.88158 * 298.39918 * 26 12 10 29 29 H 1.08996 * 109.46989 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47229 * 300.00120 * 1 2 3 31 31 H 1.09001 * 109.47021 * 59.99188 * 1 2 3 32 32 H 1.09000 * 109.47212 * 269.97421 * 6 5 4 33 33 H 1.09005 * 109.47544 * 29.97590 * 6 5 4 34 34 H 1.09004 * 109.47173 * 149.97802 * 6 5 4 35 35 H 1.08003 * 120.51281 * 180.02562 * 8 7 5 36 36 H 1.08996 * 110.36581 * 85.25050 * 13 12 10 37 37 H 1.08997 * 110.36509 * 322.92079 * 13 12 10 38 38 H 0.96993 * 120.00482 * 266.45016 * 16 14 13 39 39 H 0.97008 * 119.99703 * 179.97438 * 20 19 17 40 40 H 1.08999 * 110.72023 * 153.86589 * 25 14 13 41 41 H 1.08996 * 110.71932 * 276.96245 * 25 14 13 42 42 H 1.08999 * 109.46614 * 302.18715 * 28 26 12 43 43 H 1.08994 * 109.47226 * 62.19177 * 28 26 12 44 44 H 1.08992 * 109.46794 * 182.19375 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0431 1.2053 0.0000 4 7 1.3321 2.3265 0.0053 5 6 1.9249 3.5030 0.0002 6 6 1.0744 4.7470 0.0008 7 7 3.2382 3.6284 -0.0050 8 6 4.0262 2.5670 -0.0048 9 6 3.4481 1.2941 0.0005 10 6 4.2858 0.0796 0.0004 11 8 3.9252 -0.9077 0.6116 12 7 5.4506 0.0644 -0.6774 13 6 5.9540 1.1450 -1.5449 14 6 6.9264 0.4447 -2.5266 15 1 7.6682 1.1462 -2.9086 16 7 6.1954 -0.1929 -3.6244 17 6 5.8702 0.5298 -4.7412 18 1 6.1522 1.5698 -4.8125 19 6 5.1770 -0.0743 -5.7813 20 7 4.8640 0.6204 -6.8544 21 14 4.6885 -1.8731 -5.6577 22 1 3.3462 -1.9796 -5.0315 23 1 4.6495 -2.4699 -7.0169 24 1 5.6816 -2.5996 -4.8263 25 6 7.5863 -0.6168 -1.6074 26 6 6.4301 -1.0319 -0.6734 27 1 5.9668 -1.9474 -1.0412 28 6 6.9602 -1.2509 0.7452 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 0.8655 5.0449 -1.0267 33 1 0.1365 4.5459 0.5186 34 1 1.6060 5.5503 0.5109 35 1 5.1002 2.6814 -0.0087 36 1 6.4844 1.8907 -0.9528 37 1 5.1316 1.6074 -2.0907 38 1 5.9418 -1.1269 -3.5603 39 1 4.3799 0.1982 -7.5814 40 1 7.9355 -1.4687 -2.1908 41 1 8.4065 -0.1783 -1.0389 42 1 7.4058 -0.3267 1.1132 43 1 6.1386 -1.5437 1.3989 44 1 7.7138 -2.0382 0.7339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988938208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:28 Heat of formation + Delta-G solvation = -22.928885 kcal Electronic energy + Delta-G solvation = -28099.426660 eV Core-core repulsion = 24245.234936 eV Total energy + Delta-G solvation = -3854.191724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.63355 -41.04527 -39.80062 -38.77548 -35.93585 -34.97884 -33.97728 -33.45118 -32.54413 -30.62662 -29.96677 -28.52486 -26.91223 -25.57043 -25.01221 -24.81815 -23.21386 -21.67711 -20.48954 -19.79500 -19.64664 -18.98110 -18.32588 -17.72966 -17.38712 -16.55598 -16.21438 -16.09905 -15.83932 -15.73387 -15.66161 -15.20337 -14.77013 -14.65799 -14.50554 -14.19533 -13.72785 -13.60788 -13.48005 -13.31012 -13.20473 -13.10703 -13.05034 -12.79286 -12.72955 -12.56264 -12.35479 -12.12706 -11.99401 -11.80781 -11.51947 -11.46998 -11.14616 -10.96138 -10.66890 -10.27354 -9.77165 -9.26038 -8.05941 -5.37491 -0.63714 -0.10547 1.29714 1.33602 1.38337 1.52020 1.72136 1.91341 2.42411 2.53275 2.71989 2.88317 3.24116 3.31843 3.51356 3.58334 3.72219 3.81734 3.96185 4.07247 4.14350 4.24204 4.24836 4.35030 4.43936 4.53049 4.63449 4.68704 4.70190 4.70851 4.73741 4.87161 4.94229 5.08771 5.16145 5.19189 5.22607 5.34152 5.46799 5.55736 5.77069 5.88305 6.19198 6.43748 6.79906 7.03095 7.04889 7.82116 7.97305 9.15066 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.005180 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.524849 B = 5404.591086 C = 6221.640935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.394 3.606 4 N -0.582 5.582 5 C 0.363 3.637 6 C -0.085 4.085 7 N -0.547 5.547 8 C 0.224 3.776 9 C -0.285 4.285 10 C 0.586 3.414 11 O -0.565 6.565 12 N -0.597 5.597 13 C 0.071 3.929 14 C 0.160 3.840 15 H 0.095 0.905 16 N -0.744 5.744 17 C -0.219 4.219 18 H 0.072 0.928 19 C -0.057 4.057 20 N -0.978 5.978 21 Si 0.936 3.064 22 H -0.298 1.298 23 H -0.294 1.294 24 H -0.251 1.251 25 C -0.121 4.121 26 C 0.130 3.870 27 H 0.046 0.954 28 C -0.148 4.148 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.206 0.794 36 H 0.109 0.891 37 H 0.053 0.947 38 H 0.360 0.640 39 H 0.256 0.744 40 H 0.085 0.915 41 H 0.124 0.876 42 H 0.075 0.925 43 H 0.039 0.961 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 4.615 18.710 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.204 6.204 3 C 0.207 3.793 4 N -0.314 5.314 5 C 0.098 3.902 6 C -0.142 4.142 7 N -0.266 5.266 8 C 0.059 3.941 9 C -0.294 4.294 10 C 0.374 3.626 11 O -0.445 6.445 12 N -0.329 5.329 13 C -0.054 4.054 14 C 0.051 3.949 15 H 0.113 0.887 16 N -0.385 5.385 17 C -0.350 4.350 18 H 0.090 0.910 19 C -0.249 4.249 20 N -0.629 5.629 21 Si 0.765 3.235 22 H -0.225 1.225 23 H -0.220 1.220 24 H -0.176 1.176 25 C -0.159 4.159 26 C 0.027 3.973 27 H 0.065 0.935 28 C -0.206 4.206 29 H 0.140 0.860 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.222 0.778 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.193 0.807 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.058 0.942 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.757 4.710 18.917 19.574 hybrid contribution -0.726 -2.053 -0.709 2.290 sum -2.482 2.656 18.208 18.568 Atomic orbital electron populations 1.23285 0.74697 1.05258 1.03200 1.86384 1.25410 1.23643 1.84965 1.20298 0.88705 0.85677 0.84661 1.68118 1.40899 0.98498 1.23836 1.24124 0.88797 0.93015 0.84281 1.20848 0.98299 0.89617 1.05474 1.68433 1.05730 1.33108 1.19352 1.23946 1.02108 0.84559 0.83500 1.20868 0.92362 0.97561 1.18625 1.17334 0.79873 0.86417 0.78942 1.90733 1.71694 1.35865 1.46175 1.48404 1.18459 1.20457 1.45590 1.23490 0.99012 0.90457 0.92444 1.21670 0.92134 0.94879 0.86233 0.88730 1.42784 1.68211 1.10318 1.17236 1.19065 1.27497 0.95066 0.93358 0.90984 1.25297 1.01854 1.01081 0.96629 1.69840 1.47043 1.37322 1.08713 0.85695 0.78180 0.82871 0.76731 1.22544 1.22036 1.17593 1.23043 0.96645 0.99842 0.96365 1.21678 0.88763 0.89124 0.97710 0.93548 1.22033 1.00950 1.03372 0.94220 0.86035 0.90656 0.91842 0.87895 0.88013 0.87283 0.77760 0.87281 0.92856 0.80739 0.93544 0.89624 0.85827 0.90610 0.94199 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.41 113.37 1.18 1.90 16 2 O -0.30 -10.56 9.29 -70.39 -0.65 -11.21 16 3 C 0.39 13.55 7.51 85.17 0.64 14.19 16 4 N -0.58 -17.28 9.26 -299.86 -2.78 -20.06 16 5 C 0.36 9.41 7.64 138.73 1.06 10.47 16 6 C -0.08 -1.33 10.31 71.24 0.73 -0.60 16 7 N -0.55 -14.74 10.31 -186.93 -1.93 -16.66 16 8 C 0.22 6.13 9.46 85.02 0.80 6.94 16 9 C -0.29 -9.57 5.46 -19.83 -0.11 -9.68 16 10 C 0.59 21.27 7.18 86.69 0.62 21.90 16 11 O -0.56 -23.75 15.34 11.26 0.17 -23.58 16 12 N -0.60 -18.77 3.06 -791.76 -2.43 -21.20 16 13 C 0.07 2.04 4.90 86.86 0.43 2.46 16 14 C 0.16 5.00 3.69 46.39 0.17 5.17 16 15 H 0.09 2.77 8.13 -2.39 -0.02 2.75 16 16 N -0.74 -32.24 5.07 -316.37 -1.60 -33.85 16 17 C -0.22 -11.74 10.47 84.03 0.88 -10.86 16 18 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 19 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 20 N -0.98 -61.82 13.97 21.65 0.30 -61.51 16 21 Si 0.94 46.49 27.74 68.60 1.90 48.40 16 22 H -0.30 -15.30 7.11 99.48 0.71 -14.60 16 23 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 24 H -0.25 -11.27 6.52 99.48 0.65 -10.62 16 25 C -0.12 -2.83 6.04 31.78 0.19 -2.63 16 26 C 0.13 3.61 3.43 45.34 0.16 3.77 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 C -0.15 -3.31 9.10 71.99 0.66 -2.65 16 29 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 31 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.21 4.27 5.75 -2.91 -0.02 4.25 16 36 H 0.11 2.15 6.93 -2.39 -0.02 2.13 16 37 H 0.05 1.89 7.23 -2.39 -0.02 1.87 16 38 H 0.36 15.99 5.68 -92.71 -0.53 15.46 16 39 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 40 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.12 1.94 7.86 -2.39 -0.02 1.92 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.04 1.11 7.08 -2.39 -0.02 1.09 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -78.32 362.27 1.31 -77.01 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.44 Total: 25.13 kcal Atomic # 6 Polarization: 29.66 SS G_CDS: 7.88 Total: 37.54 kcal Atomic # 7 Polarization: -144.85 SS G_CDS: -8.43 Total: -153.28 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.48 Total: -34.79 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.90 Total: 48.40 kcal Total: -78.32 1.31 -77.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988938208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.083 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds