Wall clock time and date at job start Tue Mar 31 2020 13:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33228 * 126.02204 * 2 1 4 4 C 1.31529 * 109.76000 * 180.30507 * 3 2 1 5 5 O 1.35209 * 125.48743 * 179.72433 * 4 3 2 6 6 N 1.34941 * 109.01887 * 359.72621 * 4 3 2 7 7 H 0.96997 * 126.54153 * 180.02562 * 6 4 3 8 8 C 1.36719 * 126.01820 * 179.84046 * 2 1 3 9 9 C 1.46377 * 126.82662 * 359.97372 * 8 2 1 10 10 O 1.21741 * 120.00029 * 359.70367 * 9 8 2 11 11 N 1.34775 * 120.00281 * 179.71535 * 9 8 2 12 12 C 1.46504 * 120.00010 * 179.97438 * 11 9 8 13 13 C 1.55231 * 113.16839 * 299.95175 * 12 11 9 14 14 C 1.54222 * 106.82272 * 239.90153 * 13 12 11 15 15 C 1.54757 * 104.15415 * 334.35955 * 14 13 12 16 16 C 1.54774 * 103.21858 * 37.80879 * 15 14 13 17 17 H 1.08991 * 111.86623 * 85.85322 * 16 15 14 18 18 N 1.46975 * 108.68960 * 209.80720 * 16 15 14 19 19 C 1.36932 * 125.58284 * 295.09758 * 18 16 15 20 20 H 1.08010 * 119.99584 * 13.88525 * 19 18 16 21 21 C 1.38813 * 120.00494 * 193.89130 * 19 18 16 22 22 N 1.31616 * 119.99809 * 27.02824 * 21 19 18 23 23 Si 1.86801 * 120.00088 * 207.02883 * 21 19 18 24 24 H 1.48503 * 109.47189 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47234 * 119.99773 * 23 21 19 26 26 H 1.48496 * 109.47307 * 240.00259 * 23 21 19 27 27 C 1.47377 * 108.84336 * 115.36259 * 18 16 15 28 28 C 1.54915 * 112.77666 * 64.05952 * 12 11 9 29 29 H 1.09008 * 109.46650 * 270.16385 * 1 2 3 30 30 H 1.09000 * 109.47471 * 30.15573 * 1 2 3 31 31 H 1.08997 * 109.47707 * 150.16328 * 1 2 3 32 32 H 0.96700 * 114.00483 * 269.99996 * 5 4 3 33 33 H 0.96996 * 119.99642 * 359.97438 * 11 9 8 34 34 H 1.09000 * 110.52505 * 120.23285 * 13 12 11 35 35 H 1.09002 * 109.40694 * 358.95581 * 13 12 11 36 36 H 1.08997 * 110.49656 * 215.68803 * 14 13 12 37 37 H 1.09001 * 110.60518 * 93.07684 * 14 13 12 38 38 H 1.08999 * 110.66825 * 279.37385 * 15 14 13 39 39 H 1.09004 * 110.66897 * 156.24110 * 15 14 13 40 40 H 0.96999 * 120.00428 * 5.85540 * 22 21 19 41 41 H 1.08996 * 110.36928 * 93.87176 * 27 18 16 42 42 H 1.09000 * 110.37149 * 216.20226 * 27 18 16 43 43 H 1.09005 * 110.96234 * 204.56648 * 28 12 11 44 44 H 1.08995 * 110.97361 * 328.29620 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2905 1.0775 0.0000 4 6 3.5531 0.7092 -0.0066 5 8 4.6149 1.5463 -0.0138 6 7 3.6181 -0.6386 -0.0050 7 1 4.4242 -1.1780 -0.0084 8 6 2.3109 -1.1058 0.0031 9 6 1.8792 -2.5045 0.0075 10 8 0.6923 -2.7751 0.0142 11 7 2.7956 -3.4927 0.0044 12 6 2.3634 -4.8925 0.0094 13 6 1.5092 -5.2635 1.2513 14 6 2.2612 -6.3891 1.9902 15 6 3.1044 -7.0696 0.8852 16 6 3.5593 -5.8808 0.0046 17 1 4.4703 -5.4190 0.3852 18 7 3.7228 -6.3539 -1.3773 19 6 4.6465 -7.2715 -1.8013 20 1 5.1783 -7.8750 -1.0804 21 6 4.8994 -7.4262 -3.1574 22 7 4.7063 -6.4187 -3.9819 23 14 5.5139 -9.0643 -3.8120 24 1 5.6475 -10.0273 -2.6895 25 1 4.5464 -9.5945 -4.8058 26 1 6.8358 -8.8735 -4.4611 27 6 2.7342 -5.6742 -2.2332 28 6 1.5825 -5.2837 -1.2701 29 1 -0.3633 0.0029 1.0278 30 1 -0.3634 0.8886 -0.5162 31 1 -0.3634 -0.8914 -0.5113 32 1 4.9189 1.7885 -0.8993 33 1 3.7413 -3.2771 -0.0012 34 1 0.5224 -5.6119 0.9462 35 1 1.4132 -4.3917 1.8984 36 1 1.5562 -7.0985 2.4235 37 1 2.9083 -5.9749 2.7633 38 1 2.4940 -7.7643 0.3083 39 1 3.9653 -7.5797 1.3175 40 1 4.4694 -5.5451 -3.6332 41 1 3.1721 -4.7845 -2.6857 42 1 2.3696 -6.3528 -3.0043 43 1 0.9231 -6.1307 -1.0808 44 1 1.0213 -4.4343 -1.6596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991215040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:10 Heat of formation + Delta-G solvation = -18.364575 kcal Electronic energy + Delta-G solvation = -28100.455994 eV Core-core repulsion = 24246.462193 eV Total energy + Delta-G solvation = -3853.993801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.41111 -41.55935 -39.57787 -38.38872 -36.34812 -35.24263 -34.14754 -33.38323 -32.01548 -31.34819 -28.57581 -28.22277 -27.30229 -25.75639 -24.21372 -22.96962 -22.07769 -21.63989 -20.96672 -20.40041 -20.27044 -19.47446 -18.85832 -17.72944 -17.32410 -16.77140 -16.59344 -16.01994 -15.90216 -15.60335 -15.29030 -15.22068 -14.83300 -14.66074 -14.31878 -14.21539 -13.62868 -13.56097 -13.39760 -13.28164 -13.17072 -13.05579 -12.66020 -12.44563 -12.21741 -11.99656 -11.93126 -11.86587 -11.68969 -11.54436 -11.49413 -11.34580 -11.23022 -10.94065 -10.51728 -10.19087 -9.52158 -9.02033 -8.29696 -5.29773 0.01587 1.26700 1.53962 1.57913 1.65342 1.80556 1.92081 2.13977 2.63192 2.76469 3.18366 3.24060 3.47891 3.63580 3.77508 3.82765 3.86278 4.03005 4.22597 4.26415 4.33697 4.40141 4.43257 4.51610 4.69287 4.76554 4.80773 4.83372 4.92297 4.95826 4.97802 5.03406 5.07517 5.15283 5.23462 5.28412 5.43425 5.49735 5.54265 5.70912 5.71674 6.28649 6.33273 6.58941 6.64401 6.89739 7.01631 7.71710 8.29453 9.03398 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.003893 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.160408 B = 7191.296662 C = 8103.729711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.104 3.896 3 N -0.516 5.516 4 C 0.424 3.576 5 O -0.441 6.441 6 N -0.544 5.544 7 H 0.434 0.566 8 C -0.095 4.095 9 C 0.600 3.400 10 O -0.537 6.537 11 N -0.700 5.700 12 C 0.171 3.829 13 C -0.102 4.102 14 C -0.110 4.110 15 C -0.122 4.122 16 C 0.154 3.846 17 H 0.046 0.954 18 N -0.612 5.612 19 C -0.330 4.330 20 H 0.066 0.934 21 C -0.079 4.079 22 N -0.954 5.954 23 Si 1.115 2.885 24 H -0.271 1.271 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.155 3.845 28 C -0.120 4.120 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.432 0.568 33 H 0.401 0.599 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.256 0.744 41 H 0.000 1.000 42 H 0.017 0.983 43 H 0.080 0.920 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.402 10.668 11.207 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.031 4.031 3 N -0.248 5.248 4 C 0.122 3.878 5 O -0.246 6.246 6 N -0.163 5.163 7 H 0.276 0.724 8 C -0.210 4.210 9 C 0.387 3.613 10 O -0.414 6.414 11 N -0.350 5.350 12 C 0.084 3.916 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.161 4.161 16 C 0.047 3.953 17 H 0.064 0.936 18 N -0.337 5.337 19 C -0.459 4.459 20 H 0.084 0.916 21 C -0.275 4.275 22 N -0.598 5.598 23 Si 0.940 3.060 24 H -0.196 1.196 25 H -0.220 1.220 26 H -0.221 1.221 27 C 0.029 3.971 28 C -0.159 4.159 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.294 0.706 33 H 0.237 0.763 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.018 0.982 42 H 0.036 0.964 43 H 0.098 0.902 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.984 10.391 10.411 15.239 hybrid contribution 1.413 0.136 0.282 1.447 sum -2.571 10.527 10.693 15.224 Atomic orbital electron populations 1.20344 0.85097 1.03975 1.03815 1.21257 0.97711 0.85936 0.98169 1.70285 0.99514 1.30695 1.24328 1.20244 0.87595 0.79060 1.00903 1.84793 1.42251 1.60837 1.36738 1.43619 1.08649 1.07917 1.56122 0.72388 1.20655 0.83930 0.94580 1.21816 1.16730 0.85766 0.82571 0.76200 1.90815 1.16399 1.83088 1.51124 1.45668 1.09438 1.05125 1.74766 1.21742 0.94573 0.79403 0.95869 1.22475 0.98221 0.98836 0.94550 1.22303 0.98652 0.96978 0.96901 1.22737 0.99421 0.97409 0.96578 1.22027 0.94278 0.93010 0.85953 0.93639 1.44780 1.36645 1.48540 1.03773 1.20015 1.18767 1.13268 0.93822 0.91618 1.26931 1.00794 1.06305 0.93456 1.70846 1.49356 1.01197 1.38402 0.82858 0.75523 0.72242 0.75359 1.19567 1.22016 1.22053 1.21400 0.88950 0.93667 0.93037 1.23064 0.96535 1.00967 0.95344 0.89653 0.89800 0.89848 0.70553 0.76343 0.90772 0.91425 0.89848 0.90457 0.92611 0.92045 0.93346 0.98189 0.96447 0.90151 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.68 9.87 71.24 0.70 -0.98 16 2 C 0.10 2.72 7.14 41.99 0.30 3.02 16 3 N -0.52 -13.38 11.22 -301.67 -3.39 -16.76 16 4 C 0.42 8.94 9.43 179.99 1.70 10.63 16 5 O -0.44 -6.53 13.62 -84.90 -1.16 -7.69 16 6 N -0.54 -10.81 6.12 -300.14 -1.84 -12.65 16 7 H 0.43 6.40 8.32 -92.71 -0.77 5.63 16 8 C -0.09 -2.42 7.08 39.80 0.28 -2.14 16 9 C 0.60 17.23 6.99 86.36 0.60 17.83 16 10 O -0.54 -17.49 12.74 -4.48 -0.06 -17.55 16 11 N -0.70 -19.71 5.27 -417.40 -2.20 -21.91 16 12 C 0.17 5.48 0.77 5.76 0.00 5.48 16 13 C -0.10 -2.79 5.34 31.77 0.17 -2.62 16 14 C -0.11 -2.72 6.84 31.61 0.22 -2.51 16 15 C -0.12 -3.96 6.22 31.80 0.20 -3.76 16 16 C 0.15 5.69 3.61 46.24 0.17 5.86 16 17 H 0.05 1.68 7.97 -2.39 -0.02 1.66 16 18 N -0.61 -29.10 2.97 -663.18 -1.97 -31.07 16 19 C -0.33 -17.74 9.76 84.03 0.82 -16.92 16 20 H 0.07 3.49 7.96 -2.91 -0.02 3.46 16 21 C -0.08 -4.44 5.09 84.86 0.43 -4.01 16 22 N -0.95 -57.64 12.81 21.65 0.28 -57.37 16 23 Si 1.11 50.51 30.00 68.60 2.06 52.57 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 27 C 0.16 7.27 5.21 86.94 0.45 7.72 16 28 C -0.12 -4.47 5.83 31.98 0.19 -4.28 16 29 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 2.07 6.47 -2.39 -0.02 2.05 16 32 H 0.43 1.85 9.06 -74.06 -0.67 1.18 16 33 H 0.40 9.98 7.73 -92.71 -0.72 9.26 16 34 H 0.07 2.06 7.40 -2.39 -0.02 2.04 16 35 H 0.07 1.80 7.48 -2.39 -0.02 1.78 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 2.04 8.09 -2.39 -0.02 2.02 16 39 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.26 15.60 5.83 -92.71 -0.54 15.06 16 41 H 0.00 0.02 6.86 -2.39 -0.02 0.00 16 42 H 0.02 0.92 7.70 -2.39 -0.02 0.90 16 43 H 0.08 2.91 7.60 -2.38 -0.02 2.90 16 44 H 0.07 2.71 6.84 -2.39 -0.02 2.69 16 Total: -1.00 -72.40 351.24 -2.89 -75.29 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -0.86 Total: 23.82 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 6.23 Total: 13.32 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -9.11 Total: -139.76 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -1.21 Total: -25.24 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.06 Total: 52.57 kcal Total: -72.40 -2.89 -75.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991215040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.925 kcal (2) G-P(sol) polarization free energy of solvation -72.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds