Wall clock time and date at job start Tue Mar 31 2020 12:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 110.88611 * 2 1 4 4 C 1.55122 * 111.19209 * 236.06601 * 2 1 3 5 5 N 1.47427 * 104.72606 * 279.19087 * 4 2 1 6 6 C 1.34778 * 125.64997 * 155.81620 * 5 4 2 7 7 O 1.21610 * 119.99961 * 359.71917 * 6 5 4 8 8 C 1.47292 * 120.00153 * 179.71885 * 6 5 4 9 9 C 1.37930 * 125.90174 * 179.97438 * 8 6 5 10 10 C 1.39445 * 107.45764 * 179.76284 * 9 8 6 11 11 C 1.37927 * 107.46438 * 0.42056 * 10 9 8 12 12 C 1.47300 * 125.89936 * 179.84109 * 11 10 9 13 13 N 1.34777 * 119.99880 * 179.42054 * 12 11 10 14 14 O 1.21613 * 120.00097 * 359.69423 * 12 11 10 15 15 N 1.36750 * 108.19952 * 359.57821 * 11 10 9 16 16 H 0.97000 * 125.66091 * 180.23552 * 15 11 10 17 17 C 1.47016 * 108.69937 * 335.55624 * 5 4 2 18 18 C 1.54324 * 107.27265 * 1.28217 * 17 5 4 19 19 H 1.08997 * 110.71495 * 140.56081 * 18 17 5 20 20 N 1.46497 * 110.72135 * 263.83008 * 18 17 5 21 21 C 1.36941 * 120.00034 * 273.54910 * 20 18 17 22 22 H 1.07998 * 120.00169 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99530 * 179.97438 * 21 20 18 24 24 N 1.31609 * 120.00364 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99586 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46913 * 60.00024 * 25 23 21 27 27 H 1.48504 * 109.47248 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47165 * 300.00428 * 25 23 21 29 29 H 1.09010 * 109.47134 * 296.12013 * 1 2 3 30 30 H 1.09000 * 109.47469 * 56.11503 * 1 2 3 31 31 H 1.09003 * 109.47418 * 176.12001 * 1 2 3 32 32 H 1.09006 * 109.46962 * 183.87725 * 3 2 1 33 33 H 1.08996 * 109.47238 * 303.88318 * 3 2 1 34 34 H 1.09000 * 109.47246 * 63.87993 * 3 2 1 35 35 H 1.09006 * 110.50038 * 160.34822 * 4 2 1 36 36 H 1.09003 * 110.34728 * 37.95863 * 4 2 1 37 37 H 1.07996 * 126.26829 * 0.02562 * 9 8 6 38 38 H 1.08004 * 126.26348 * 180.26545 * 10 9 8 39 39 H 0.96999 * 120.00043 * 180.28067 * 13 12 11 40 40 H 0.97000 * 119.99736 * 0.27066 * 13 12 11 41 41 H 1.09004 * 109.88660 * 120.70515 * 17 5 4 42 42 H 1.09001 * 109.87884 * 241.86564 * 17 5 4 43 43 H 0.96997 * 119.99831 * 93.54845 * 20 18 17 44 44 H 0.97001 * 119.99956 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0907 -0.8074 -1.2000 5 7 2.0139 -2.2162 -0.7724 6 6 1.9471 -3.2835 -1.5928 7 8 1.9419 -3.1244 -2.7984 8 6 1.8803 -4.6427 -1.0290 9 6 1.8085 -5.8154 -1.7515 10 6 1.7679 -6.8679 -0.8378 11 6 1.8060 -6.3196 0.4272 12 6 1.7798 -7.0694 1.6948 13 7 1.8345 -6.4101 2.8690 14 8 1.7139 -8.2837 1.6817 15 7 1.8783 -4.9598 0.3013 16 1 1.9207 -4.3255 1.0340 17 6 2.0284 -2.2644 0.6969 18 6 2.0861 -0.8074 1.2025 19 1 1.4523 -0.6785 2.0799 20 7 3.4666 -0.4150 1.4964 21 6 4.0065 -0.6795 2.7267 22 1 3.4145 -1.1771 3.4806 23 6 5.3148 -0.3081 3.0049 24 7 6.0365 0.2977 2.0861 25 14 6.0511 -0.6683 4.6835 26 1 6.0343 -2.1330 4.9274 27 1 7.4511 -0.1748 4.7263 28 1 5.2529 0.0171 5.7315 29 1 -0.3634 0.4525 0.9228 30 1 -0.3634 0.5729 -0.8531 31 1 -0.3634 -1.0253 -0.0695 32 1 3.1630 1.4034 -0.0695 33 1 1.6697 1.9732 -0.8531 34 1 1.7823 1.9302 0.9227 35 1 3.1253 -0.5272 -1.3986 36 1 1.4764 -0.6457 -2.0858 37 1 1.7914 -5.9026 -2.8278 38 1 1.7138 -7.9198 -1.0769 39 1 1.8214 -6.9041 3.7037 40 1 1.8871 -5.4416 2.8794 41 1 1.1218 -2.7476 1.0610 42 1 2.9062 -2.8112 1.0411 43 1 3.9982 0.0322 0.8194 44 1 6.9505 0.5576 2.2806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996314397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:24 Heat of formation + Delta-G solvation = -31.685467 kcal Electronic energy + Delta-G solvation = -27833.878985 eV Core-core repulsion = 23979.307547 eV Total energy + Delta-G solvation = -3854.571438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.76800 -41.15733 -39.99559 -39.13939 -35.79909 -34.97487 -34.76831 -32.66742 -32.18162 -30.85800 -29.59077 -28.04801 -27.67558 -25.92352 -24.82281 -23.25533 -22.19819 -21.70130 -20.90175 -20.30350 -19.14431 -19.10284 -18.15518 -17.84639 -17.36958 -16.86845 -16.52778 -16.20940 -15.80467 -15.73203 -15.40488 -15.32476 -14.98835 -14.60298 -14.57498 -14.21862 -13.87323 -13.82439 -13.76645 -13.45423 -13.26147 -13.13332 -12.81462 -12.75540 -12.70820 -12.20485 -12.10010 -11.90833 -11.63689 -11.47722 -11.35304 -11.22511 -10.93444 -10.89872 -10.23177 -9.87935 -9.42706 -9.03740 -7.92625 -5.21362 -0.12530 1.02932 1.50394 1.51528 1.57538 1.61194 1.91301 2.16011 2.20821 2.36946 2.56633 3.23711 3.37129 3.59760 3.70790 3.77931 3.82105 4.00603 4.14042 4.17789 4.20446 4.33451 4.51479 4.56938 4.68173 4.76015 4.82267 4.88660 4.92072 5.00071 5.04878 5.08935 5.16395 5.27722 5.35937 5.40358 5.54600 5.59413 5.65602 5.73654 5.99092 6.24149 6.27463 6.34370 6.90028 7.06467 7.36347 8.09571 8.31974 9.30255 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009410 B = 0.005076 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.971214 B = 5514.348787 C = 7558.746051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.076 4.076 3 C -0.121 4.121 4 C 0.120 3.880 5 N -0.602 5.602 6 C 0.593 3.407 7 O -0.565 6.565 8 C -0.016 4.016 9 C -0.127 4.127 10 C -0.124 4.124 11 C -0.029 4.029 12 C 0.596 3.404 13 N -0.832 5.832 14 O -0.564 6.564 15 N -0.509 5.509 16 H 0.427 0.573 17 C 0.061 3.939 18 C 0.174 3.826 19 H 0.090 0.910 20 N -0.722 5.722 21 C -0.236 4.236 22 H 0.089 0.911 23 C -0.069 4.069 24 N -0.968 5.968 25 Si 0.963 3.037 26 H -0.277 1.277 27 H -0.308 1.308 28 H -0.277 1.277 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.163 0.837 38 H 0.168 0.832 39 H 0.420 0.580 40 H 0.410 0.590 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.375 0.625 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.624 -6.045 -0.654 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.077 4.077 3 C -0.178 4.178 4 C -0.002 4.002 5 N -0.333 5.333 6 C 0.383 3.617 7 O -0.445 6.445 8 C -0.135 4.135 9 C -0.153 4.153 10 C -0.150 4.150 11 C -0.147 4.147 12 C 0.381 3.619 13 N -0.396 5.396 14 O -0.443 6.443 15 N -0.112 5.112 16 H 0.273 0.727 17 C -0.065 4.065 18 C 0.063 3.937 19 H 0.107 0.893 20 N -0.361 5.361 21 C -0.368 4.368 22 H 0.107 0.893 23 C -0.262 4.262 24 N -0.618 5.618 25 Si 0.794 3.206 26 H -0.203 1.203 27 H -0.235 1.235 28 H -0.203 1.203 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.181 0.819 38 H 0.185 0.815 39 H 0.254 0.746 40 H 0.240 0.760 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.209 0.791 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.628 -6.673 -1.132 15.216 hybrid contribution 1.448 0.687 1.170 1.985 sum -12.180 -5.986 0.038 13.571 Atomic orbital electron populations 1.21657 0.91094 1.02176 1.03209 1.22013 0.97202 0.95227 0.93296 1.21513 1.00139 0.94056 1.02127 1.22382 1.00305 0.79256 0.98299 1.48342 1.70922 1.06411 1.07618 1.17072 0.76696 0.82559 0.85349 1.90783 1.53330 1.85636 1.14716 1.20462 1.14960 0.94283 0.83750 1.21449 1.04054 0.89242 1.00567 1.21478 1.03740 1.00391 0.89385 1.20667 1.15336 0.82690 0.96020 1.17127 0.75458 0.86213 0.83066 1.43591 1.75973 1.12056 1.07990 1.90854 1.52021 1.14040 1.87349 1.42620 1.54225 1.06929 1.07450 0.72732 1.23414 1.00785 1.03294 0.78981 1.21446 0.86715 0.89376 0.96126 0.89263 1.42629 1.09939 1.69853 1.13665 1.19612 0.95158 1.30551 0.91481 0.89270 1.25453 0.97929 1.02140 1.00662 1.69796 1.09426 1.47473 1.35079 0.85369 0.76719 0.77899 0.80652 1.20323 1.23542 1.20281 0.90827 0.91266 0.92583 0.94307 0.91160 0.92179 0.93262 0.90024 0.81930 0.81461 0.74626 0.76029 0.89217 0.91825 0.79111 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.58 71.98 0.62 -1.77 16 2 C -0.08 -1.95 0.83 -50.72 -0.04 -1.99 16 3 C -0.12 -3.31 8.22 71.98 0.59 -2.72 16 4 C 0.12 3.53 5.82 86.93 0.51 4.03 16 5 N -0.60 -17.68 3.31 -815.38 -2.70 -20.38 16 6 C 0.59 19.04 7.84 86.62 0.68 19.72 16 7 O -0.57 -21.40 17.13 -4.06 -0.07 -21.47 16 8 C -0.02 -0.45 6.88 40.68 0.28 -0.17 16 9 C -0.13 -3.25 10.60 22.49 0.24 -3.01 16 10 C -0.12 -2.96 10.60 22.49 0.24 -2.72 16 11 C -0.03 -0.68 7.04 40.69 0.29 -0.40 16 12 C 0.60 13.71 8.08 86.63 0.70 14.41 16 13 N -0.83 -12.43 8.87 -175.98 -1.56 -13.99 16 14 O -0.56 -16.84 17.71 -4.07 -0.07 -16.91 16 15 N -0.51 -11.53 5.53 -172.56 -0.95 -12.48 16 16 H 0.43 8.21 4.05 -92.71 -0.38 7.83 16 17 C 0.06 1.60 4.53 86.73 0.39 1.99 16 18 C 0.17 5.16 2.86 46.18 0.13 5.29 16 19 H 0.09 2.42 8.03 -2.39 -0.02 2.40 16 20 N -0.72 -29.71 4.61 -317.33 -1.46 -31.18 16 21 C -0.24 -10.94 9.98 84.03 0.84 -10.10 16 22 H 0.09 3.73 7.83 -2.91 -0.02 3.71 16 23 C -0.07 -3.54 5.50 84.86 0.47 -3.07 16 24 N -0.97 -54.84 13.06 21.65 0.28 -54.56 16 25 Si 0.96 41.73 29.55 68.60 2.03 43.76 16 26 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.31 -14.17 7.11 99.48 0.71 -13.46 16 28 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 29 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.06 7.91 -2.39 -0.02 1.04 16 32 H 0.04 1.32 6.38 -2.38 -0.02 1.30 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.69 7.99 -2.38 -0.02 1.67 16 36 H 0.08 2.30 7.95 -2.39 -0.02 2.28 16 37 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 38 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.42 4.92 8.93 -92.71 -0.83 4.09 16 40 H 0.41 4.55 7.93 -92.71 -0.74 3.81 16 41 H 0.09 1.71 7.08 -2.38 -0.02 1.69 16 42 H 0.06 1.89 7.13 -2.39 -0.02 1.87 16 43 H 0.38 17.59 6.10 -92.71 -0.57 17.02 16 44 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -67.75 362.78 -0.01 -67.76 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: -1.43 Total: 39.96 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 5.93 Total: 19.49 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -6.40 Total: -132.58 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.14 Total: -38.38 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -67.75 -0.01 -67.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996314397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.072 kcal (2) G-P(sol) polarization free energy of solvation -67.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds