Wall clock time and date at job start Tue Mar 31 2020 12:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35516 * 117.00340 * 2 1 4 4 C 1.39351 * 120.02832 * 180.02562 * 3 2 1 5 5 C 1.38422 * 118.02987 * 179.70637 * 4 3 2 6 6 C 1.39973 * 117.97545 * 0.52044 * 5 4 3 7 7 C 1.47928 * 120.12023 * 179.73747 * 6 5 4 8 8 O 1.21547 * 119.99758 * 359.73068 * 7 6 5 9 9 N 1.34778 * 120.00381 * 179.72536 * 7 6 5 10 10 C 1.48147 * 127.83150 * 359.97438 * 9 7 6 11 11 C 1.54390 * 104.61373 * 140.41797 * 10 9 7 12 12 H 1.09001 * 110.34646 * 142.73605 * 11 10 9 13 13 N 1.46494 * 110.34574 * 264.99375 * 11 10 9 14 14 C 1.36935 * 120.00422 * 270.53879 * 13 11 10 15 15 H 1.08008 * 119.99454 * 359.97438 * 14 13 11 16 16 C 1.38811 * 120.00549 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00057 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00033 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47217 * 89.99405 * 18 16 14 20 20 H 1.48493 * 109.47310 * 210.00039 * 18 16 14 21 21 H 1.48504 * 109.46763 * 329.99741 * 18 16 14 22 22 C 1.54283 * 104.96125 * 23.86571 * 11 10 9 23 23 C 1.53006 * 110.34527 * 118.87126 * 22 11 10 24 24 C 1.53006 * 110.34590 * 241.02389 * 22 11 10 25 25 C 1.48312 * 127.77278 * 179.91148 * 9 7 6 26 26 N 1.32752 * 119.76199 * 359.46552 * 6 5 4 27 27 N 1.28351 * 122.08973 * 0.27815 * 26 6 5 28 28 H 1.08995 * 109.47105 * 300.00245 * 1 2 3 29 29 H 1.09002 * 109.46709 * 60.00361 * 1 2 3 30 30 H 1.09007 * 109.47434 * 179.97438 * 1 2 3 31 31 H 1.07990 * 120.98466 * 359.97131 * 4 3 2 32 32 H 1.08005 * 121.00847 * 180.26344 * 5 4 3 33 33 H 1.09000 * 110.41356 * 21.63778 * 10 9 7 34 34 H 1.08998 * 110.41063 * 259.20009 * 10 9 7 35 35 H 0.97004 * 120.00147 * 90.53726 * 13 11 10 36 36 H 0.96998 * 119.99910 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.47351 * 181.47822 * 23 22 11 38 38 H 1.08999 * 109.46680 * 301.47521 * 23 22 11 39 39 H 1.08998 * 109.47007 * 61.47381 * 23 22 11 40 40 H 1.09004 * 109.46723 * 298.52796 * 24 22 11 41 41 H 1.08999 * 109.46937 * 58.52247 * 24 22 11 42 42 H 1.08997 * 109.47162 * 178.52449 * 24 22 11 43 43 H 1.08993 * 110.38060 * 100.78944 * 25 9 7 44 44 H 1.08999 * 110.50552 * 338.30911 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4358 1.2810 -0.0005 5 6 4.0209 2.5354 -0.0068 6 6 3.1782 3.6530 -0.0009 7 6 3.7529 5.0161 -0.0013 8 8 4.9590 5.1671 -0.0018 9 7 2.9393 6.0906 -0.0013 10 6 1.4580 6.1086 -0.0014 11 6 1.0824 7.2646 0.9506 12 1 0.2061 7.7941 0.5766 13 7 0.8316 6.7522 2.2999 14 6 -0.4284 6.3525 2.6573 15 1 -1.2374 6.4154 1.9444 16 6 -0.6660 5.8664 3.9356 17 7 -1.8771 5.4818 4.2789 18 14 0.7330 5.7582 5.1687 19 1 0.8164 7.0273 5.9354 20 1 0.4835 4.6310 6.1027 21 1 2.0113 5.5303 4.4481 22 6 2.3123 8.1961 0.9507 23 6 1.9304 9.5815 0.4257 24 6 2.8969 8.3051 2.3605 25 6 3.3255 7.5225 0.0001 26 7 1.8613 3.4854 -0.0005 27 7 1.3223 2.3205 0.0000 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0399 0.3858 -0.0005 32 1 5.0951 2.6484 -0.0117 33 1 1.0662 5.1637 0.3752 34 1 1.0803 6.3047 -1.0049 35 1 1.5581 6.6959 2.9402 36 1 -2.0431 5.1425 5.1723 37 1 2.8140 10.2194 0.4071 38 1 1.5275 9.4894 -0.5829 39 1 1.1775 10.0227 1.0788 40 1 2.1522 8.7353 3.0302 41 1 3.1755 7.3131 2.7160 42 1 3.7793 8.9446 2.3394 43 1 3.2406 7.9396 -1.0033 44 1 4.3405 7.6439 0.3785 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996487585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:42 Heat of formation + Delta-G solvation = 4.431975 kcal Electronic energy + Delta-G solvation = -28169.546751 eV Core-core repulsion = 24316.541483 eV Total energy + Delta-G solvation = -3853.005268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.53186 -41.20995 -39.75885 -39.12737 -35.89673 -34.81185 -34.36726 -33.10623 -32.84703 -29.69481 -28.78209 -28.18797 -27.76408 -26.12319 -25.39300 -24.85763 -23.08094 -21.39137 -20.44607 -19.75359 -19.39033 -19.13880 -18.04196 -17.55318 -17.23662 -16.98574 -16.52454 -16.05726 -15.68097 -15.54583 -15.43375 -15.20098 -15.07219 -14.75778 -14.58208 -14.15760 -13.91696 -13.83218 -13.40221 -13.26843 -13.04332 -12.95492 -12.75717 -12.71176 -12.66723 -12.49319 -12.22895 -11.94247 -11.81033 -11.54505 -11.49005 -11.38712 -11.22850 -11.02481 -10.68294 -10.36885 -9.84534 -9.18384 -8.00874 -5.30399 -0.63688 -0.38982 1.28906 1.30018 1.35735 1.47366 1.66566 1.84049 2.44108 2.46362 2.72711 3.09073 3.29340 3.39378 3.58054 3.65509 3.73446 3.77482 3.84887 4.09292 4.22600 4.33245 4.33550 4.37986 4.45668 4.59043 4.62516 4.67732 4.71061 4.80382 4.81411 4.86687 4.94394 4.98833 5.09248 5.18315 5.28457 5.36527 5.47216 5.59330 5.79881 5.83089 6.24380 6.38629 6.84122 7.10027 7.34723 7.87600 8.04691 9.21004 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.005942 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.555270 B = 4711.341238 C = 6506.730593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.295 6.295 3 C 0.266 3.734 4 C -0.121 4.121 5 C -0.032 4.032 6 C -0.025 4.025 7 C 0.592 3.408 8 O -0.564 6.564 9 N -0.595 5.595 10 C 0.063 3.937 11 C 0.168 3.832 12 H 0.079 0.921 13 N -0.743 5.743 14 C -0.210 4.210 15 H 0.067 0.933 16 C -0.057 4.057 17 N -0.980 5.980 18 Si 0.933 3.067 19 H -0.273 1.273 20 H -0.300 1.300 21 H -0.272 1.272 22 C -0.083 4.083 23 C -0.125 4.125 24 C -0.133 4.133 25 C 0.115 3.885 26 N -0.178 5.178 27 N -0.326 5.326 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.139 0.861 31 H 0.206 0.794 32 H 0.192 0.808 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.364 0.636 36 H 0.254 0.746 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.025 0.975 42 H 0.079 0.921 43 H 0.103 0.897 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.601 -3.983 -12.702 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.198 6.198 3 C 0.082 3.918 4 C -0.150 4.150 5 C -0.060 4.060 6 C -0.174 4.174 7 C 0.379 3.621 8 O -0.443 6.443 9 N -0.325 5.325 10 C -0.062 4.062 11 C 0.058 3.942 12 H 0.097 0.903 13 N -0.387 5.387 14 C -0.341 4.341 15 H 0.085 0.915 16 C -0.248 4.248 17 N -0.631 5.631 18 Si 0.762 3.238 19 H -0.199 1.199 20 H -0.227 1.227 21 H -0.198 1.198 22 C -0.084 4.084 23 C -0.183 4.183 24 C -0.190 4.190 25 C -0.006 4.006 26 N -0.025 5.025 27 N -0.184 5.184 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.156 0.844 31 H 0.223 0.777 32 H 0.209 0.791 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.200 0.800 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.098 0.902 43 H 0.121 0.879 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.655 -3.669 -12.710 17.631 hybrid contribution 1.148 -0.978 1.339 2.017 sum 12.803 -4.647 -11.371 17.743 Atomic orbital electron populations 1.23272 0.75093 1.05704 1.02557 1.86198 1.24755 1.22342 1.86547 1.22071 0.92219 0.87176 0.90378 1.21940 0.91331 1.00767 1.01003 1.22524 1.03558 0.89480 0.90418 1.22802 0.92546 0.96498 1.05589 1.17152 0.85115 0.82766 0.77063 1.90738 1.13842 1.85989 1.53771 1.48844 1.08665 1.06260 1.68733 1.23872 0.77967 1.03823 1.00551 1.21482 0.96474 0.91952 0.84287 0.90310 1.43094 1.07024 1.77107 1.11445 1.19078 0.86893 1.31822 0.96357 0.91505 1.25221 0.97793 1.02559 0.99260 1.69839 1.21215 1.51848 1.20209 0.85754 0.80402 0.77518 0.80097 1.19915 1.22684 1.19798 1.21799 0.94291 0.96890 0.95458 1.21756 1.02196 0.92952 1.01385 1.21734 1.01033 1.00189 0.96093 1.22734 0.98995 0.78167 1.00716 1.73215 1.10493 1.13745 1.05066 1.73222 1.32545 0.94733 1.17877 0.93238 0.91765 0.84357 0.77674 0.79063 0.87986 0.89861 0.79998 0.93674 0.90372 0.90813 0.92705 0.92770 0.95545 0.90172 0.87923 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.39 113.37 1.18 1.76 16 2 O -0.30 -7.00 10.48 -88.19 -0.92 -7.93 16 3 C 0.27 7.29 7.58 84.83 0.64 7.93 16 4 C -0.12 -2.52 10.14 22.58 0.23 -2.29 16 5 C -0.03 -0.77 9.71 22.73 0.22 -0.55 16 6 C -0.03 -0.82 6.81 41.99 0.29 -0.53 16 7 C 0.59 20.33 7.90 86.81 0.69 21.02 16 8 O -0.56 -20.26 16.65 -3.86 -0.06 -20.32 16 9 N -0.60 -19.38 3.32 -810.82 -2.69 -22.08 16 10 C 0.06 2.20 6.26 86.53 0.54 2.74 16 11 C 0.17 6.04 3.35 45.90 0.15 6.19 16 12 H 0.08 2.82 7.66 -2.39 -0.02 2.80 16 13 N -0.74 -34.27 4.40 -318.66 -1.40 -35.67 16 14 C -0.21 -11.79 10.44 84.03 0.88 -10.92 16 15 H 0.07 4.04 8.06 -2.91 -0.02 4.02 16 16 C -0.06 -3.39 5.50 84.86 0.47 -2.93 16 17 N -0.98 -63.07 13.97 21.65 0.30 -62.76 16 18 Si 0.93 47.38 27.74 68.60 1.90 49.29 16 19 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 20 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 21 H -0.27 -13.25 6.52 99.48 0.65 -12.60 16 22 C -0.08 -2.30 1.03 -51.27 -0.05 -2.35 16 23 C -0.13 -2.62 8.24 71.98 0.59 -2.03 16 24 C -0.13 -4.04 7.11 71.98 0.51 -3.53 16 25 C 0.12 3.02 6.15 86.50 0.53 3.55 16 26 N -0.18 -6.50 7.82 -48.51 -0.38 -6.88 16 27 N -0.33 -11.29 10.40 -170.01 -1.77 -13.06 16 28 H 0.05 1.24 8.11 -2.39 -0.02 1.22 16 29 H 0.06 1.35 8.11 -2.39 -0.02 1.33 16 30 H 0.14 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.21 2.35 8.06 -2.92 -0.02 2.32 16 32 H 0.19 3.55 7.71 -2.91 -0.02 3.52 16 33 H 0.10 4.28 5.07 -2.39 -0.01 4.27 16 34 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.36 16.97 2.95 -92.71 -0.27 16.69 16 36 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 39 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.05 1.79 7.84 -2.38 -0.02 1.77 16 41 H 0.03 0.93 6.88 -2.39 -0.02 0.91 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.10 2.12 7.85 -2.39 -0.02 2.10 16 44 H 0.08 2.17 7.60 -2.39 -0.02 2.15 16 Total: -1.00 -75.81 359.17 2.53 -73.28 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.69 Total: 28.07 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 6.87 Total: 18.07 kcal Atomic # 7 Polarization: -134.51 SS G_CDS: -5.94 Total: -140.45 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.99 Total: -28.25 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.90 Total: 49.29 kcal Total: -75.81 2.53 -73.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996487585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.712 kcal (2) G-P(sol) polarization free energy of solvation -75.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds