Wall clock time and date at job start Tue Mar 31 2020 14:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30277 * 126.27923 * 2 1 4 4 N 1.28678 * 109.37937 * 179.73419 * 3 2 1 5 5 C 1.30278 * 109.37663 * 0.44435 * 4 3 2 6 6 C 1.50698 * 126.27843 * 179.82512 * 5 4 3 7 7 C 1.50703 * 109.47015 * 89.69019 * 6 5 4 8 8 O 1.21286 * 119.99873 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00077 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99952 * 180.02562 * 9 7 6 11 11 H 1.08994 * 115.55315 * 350.69995 * 10 9 7 12 12 C 1.53042 * 117.50136 * 136.39087 * 10 9 7 13 13 C 1.52826 * 117.52239 * 204.97878 * 10 9 7 14 14 C 1.53182 * 117.71256 * 0.15039 * 13 10 9 15 15 C 1.53356 * 108.76719 * 201.11744 * 14 13 10 16 16 N 1.46841 * 108.81280 * 308.69154 * 15 14 13 17 17 C 1.36935 * 120.38291 * 236.92082 * 16 15 14 18 18 H 1.08008 * 120.00058 * 28.89032 * 17 16 15 19 19 C 1.38811 * 120.00102 * 208.88737 * 17 16 15 20 20 N 1.31615 * 120.00055 * 17.84573 * 19 17 16 21 21 Si 1.86809 * 120.00129 * 197.84883 * 19 17 16 22 22 H 1.48503 * 109.46795 * 89.99671 * 21 19 17 23 23 H 1.48495 * 109.47170 * 209.99858 * 21 19 17 24 24 H 1.48502 * 109.46931 * 330.00098 * 21 19 17 25 25 C 1.46850 * 119.23451 * 56.89847 * 16 15 14 26 26 C 1.53178 * 117.71381 * 144.90903 * 13 10 9 27 27 O 1.34356 * 107.43609 * 359.56382 * 5 4 3 28 28 H 1.09001 * 109.47380 * 269.99627 * 1 2 3 29 29 H 1.09001 * 109.47530 * 29.99254 * 1 2 3 30 30 H 1.09003 * 109.47617 * 150.00164 * 1 2 3 31 31 H 1.08993 * 109.47307 * 329.69242 * 6 5 4 32 32 H 1.08995 * 109.46811 * 209.68817 * 6 5 4 33 33 H 0.97004 * 119.99821 * 359.97438 * 9 7 6 34 34 H 1.08999 * 117.49685 * 214.97531 * 12 10 9 35 35 H 1.08993 * 117.50451 * 0.03085 * 12 10 9 36 36 H 1.09005 * 109.58946 * 320.89897 * 14 13 10 37 37 H 1.08996 * 109.58980 * 81.32982 * 14 13 10 38 38 H 1.09002 * 109.58037 * 188.89352 * 15 14 13 39 39 H 1.08995 * 109.69136 * 68.55607 * 15 14 13 40 40 H 0.97001 * 120.00119 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.57994 * 183.29958 * 25 16 15 42 42 H 1.09000 * 109.57924 * 62.89512 * 25 16 15 43 43 H 1.09001 * 109.59156 * 278.66829 * 26 13 10 44 44 H 1.09001 * 109.58995 * 38.94869 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2778 1.0502 0.0000 4 7 3.5090 0.6762 0.0056 5 6 3.5653 -0.6254 -0.0001 6 6 4.8176 -1.4637 -0.0002 7 6 5.2351 -1.7432 1.4206 8 8 4.5804 -1.3044 2.3425 9 7 6.3365 -2.4799 1.6668 10 6 6.7420 -2.7521 3.0480 11 1 6.1998 -2.1989 3.8148 12 6 7.1876 -4.1767 3.3860 13 6 8.2186 -3.0512 3.3046 14 6 9.1669 -3.0413 2.1016 15 6 10.4199 -3.8520 2.4545 16 7 10.9539 -3.3658 3.7331 17 6 12.2434 -2.9128 3.8177 18 1 12.7187 -2.4719 2.9539 19 6 12.9397 -3.0202 5.0138 20 7 12.5211 -3.8487 5.9468 21 14 14.4707 -1.9886 5.2991 22 1 14.0880 -0.6974 5.9250 23 1 15.3991 -2.7190 6.1990 24 1 15.1420 -1.7292 4.0001 25 6 10.0889 -3.3705 4.9198 26 6 8.8293 -2.5500 4.6169 27 8 2.3021 -1.0830 -0.0001 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 5.6146 -0.9263 -0.5140 32 1 4.6243 -2.4053 -0.5141 33 1 6.8602 -2.8306 0.9294 34 1 6.9385 -4.5604 4.3754 35 1 7.1794 -4.9111 2.5807 36 1 8.6709 -3.4913 1.2415 37 1 9.4495 -2.0150 1.8675 38 1 11.1695 -3.7244 1.6735 39 1 10.1616 -4.9071 2.5441 40 1 13.0079 -3.9240 6.7824 41 1 10.6207 -2.9261 5.7612 42 1 9.8078 -4.3952 5.1628 43 1 9.0939 -1.4972 4.5183 44 1 8.1084 -2.6714 5.4254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016612730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:38 Heat of formation + Delta-G solvation = 48.862139 kcal Electronic energy + Delta-G solvation = -26401.601578 eV Core-core repulsion = 22550.522946 eV Total energy + Delta-G solvation = -3851.078632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.48331 -40.17167 -38.54933 -36.41487 -35.57389 -33.95897 -33.29032 -31.75292 -31.07978 -30.02340 -28.36032 -27.53349 -24.38245 -23.65895 -22.87360 -22.52592 -22.01221 -20.97769 -20.50415 -18.33347 -18.07368 -17.46874 -17.02439 -16.62561 -16.15559 -15.72912 -15.08497 -14.84817 -14.81247 -14.25537 -14.04063 -13.63681 -13.55395 -13.40536 -13.26892 -13.14939 -12.94182 -12.68337 -12.61331 -12.30094 -12.09031 -11.71096 -11.64330 -11.38056 -11.22587 -11.01512 -10.76124 -10.47251 -10.36685 -10.34196 -9.98151 -9.79161 -9.72293 -9.64705 -9.40865 -8.58794 -8.46937 -6.67047 -5.80822 -3.24329 0.82890 1.86131 2.10966 2.28101 2.90518 3.37179 3.44570 3.44925 3.45107 4.00067 4.09454 4.32590 4.41928 4.48210 4.64463 4.83175 4.88995 4.89919 5.02905 5.06812 5.07305 5.17260 5.24738 5.37138 5.43717 5.44465 5.59831 5.77365 5.97457 6.01981 6.02626 6.24587 6.38492 6.43097 6.57794 6.60542 6.65647 6.78755 6.92584 7.25433 7.34268 7.64843 7.78057 7.93675 8.03900 8.44514 9.19729 9.83204 10.39435 11.26898 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030875 B = 0.002224 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.674512 B =12584.598191 C =12814.854967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.163 3.837 3 N -0.288 5.288 4 N -0.271 5.271 5 C 0.184 3.816 6 C -0.047 4.047 7 C 0.520 3.480 8 O -0.531 6.531 9 N -0.688 5.688 10 C 0.066 3.934 11 H 0.133 0.867 12 C -0.181 4.181 13 C -0.094 4.094 14 C -0.098 4.098 15 C 0.150 3.850 16 N -0.589 5.589 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.173 3.827 26 C -0.107 4.107 27 O -0.221 6.221 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.144 0.856 32 H 0.129 0.871 33 H 0.404 0.596 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.254 0.746 41 H 0.091 0.909 42 H 0.019 0.981 43 H 0.061 0.939 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.975 0.999 -13.631 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.048 4.048 3 N -0.136 5.136 4 N -0.118 5.118 5 C -0.027 4.027 6 C -0.088 4.088 7 C 0.304 3.696 8 O -0.407 6.407 9 N -0.338 5.338 10 C -0.039 4.039 11 H 0.150 0.850 12 C -0.219 4.219 13 C -0.095 4.095 14 C -0.137 4.137 15 C 0.023 3.977 16 N -0.311 5.311 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.047 3.953 26 C -0.146 4.146 27 O -0.100 6.100 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.111 0.889 31 H 0.161 0.839 32 H 0.147 0.853 33 H 0.239 0.761 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.037 0.963 43 H 0.080 0.920 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.987 2.514 -12.814 24.719 hybrid contribution 0.670 -0.985 -0.095 1.195 sum -20.317 1.529 -12.909 24.120 Atomic orbital electron populations 1.20364 0.80117 1.05639 1.05419 1.28001 0.97833 0.79573 0.99354 1.74401 0.95980 1.25587 1.17583 1.74383 1.12294 1.08905 1.16188 1.26813 0.84645 0.91283 0.99985 1.20103 0.90297 1.00748 0.97649 1.19956 0.81031 0.78614 0.89962 1.90771 1.53406 1.50706 1.45855 1.45260 1.26890 1.53041 1.08632 1.21960 0.98817 0.99387 0.83708 0.84980 1.23544 1.03793 0.91544 1.03016 1.21976 0.88337 1.00265 0.98922 1.21646 0.96993 1.01473 0.93621 1.20834 0.92675 0.94383 0.89825 1.43972 1.09842 1.73086 1.04241 1.19191 0.89137 1.32364 0.97695 0.91751 1.25054 0.97887 0.98100 0.98556 1.70029 1.41230 1.35510 1.07732 0.86306 0.82663 0.80081 0.77816 1.21397 1.21789 1.20427 1.20767 0.87489 0.95871 0.91177 1.21893 0.99307 1.00936 0.92467 1.84738 1.17373 1.38352 1.69570 0.88179 0.87473 0.88872 0.83862 0.85289 0.76064 0.88243 0.88929 0.93589 0.91613 0.92700 0.96304 0.93601 0.89133 0.96330 0.92046 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.16 1.70 8.48 -12.94 -0.11 1.59 16 3 N -0.29 -3.93 12.22 32.55 0.40 -3.53 16 4 N -0.27 -3.92 12.22 32.55 0.40 -3.52 16 5 C 0.18 2.19 6.97 -12.94 -0.09 2.10 16 6 C -0.05 -0.37 6.33 -29.03 -0.18 -0.56 16 7 C 0.52 6.24 7.82 -10.99 -0.09 6.15 16 8 O -0.53 -8.95 15.60 5.55 0.09 -8.87 16 9 N -0.69 -7.52 5.35 -53.87 -0.29 -7.81 16 10 C 0.07 0.91 6.14 -68.00 -0.42 0.49 16 11 H 0.13 2.04 7.40 -51.93 -0.38 1.66 16 12 C -0.18 -2.44 9.87 -26.79 -0.26 -2.70 16 13 C -0.09 -1.46 1.94 -154.49 -0.30 -1.76 16 14 C -0.10 -1.51 5.37 -26.45 -0.14 -1.65 16 15 C 0.15 2.93 6.52 -3.67 -0.02 2.91 16 16 N -0.59 -14.23 2.94 -172.26 -0.51 -14.73 16 17 C -0.25 -6.81 9.54 -15.06 -0.14 -6.96 16 18 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 19 C 0.00 0.08 4.89 -17.43 -0.09 -0.01 16 20 N -0.90 -25.76 11.23 55.49 0.62 -25.14 16 21 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.17 3.99 5.40 -3.67 -0.02 3.97 16 26 C -0.11 -1.98 5.83 -26.46 -0.15 -2.14 16 27 O -0.22 -2.51 10.87 5.41 0.06 -2.45 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 3.26 7.12 -40.82 -0.29 2.97 16 34 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.55 6.75 -51.93 -0.35 0.20 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 1.05 7.92 -51.93 -0.41 0.64 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.09 2.37 5.93 -51.93 -0.31 2.07 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.88 8.11 -51.93 -0.42 0.46 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -35.79 365.93 -6.75 -42.54 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.37 Total: 0.01 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.64 Total: 1.55 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.63 Total: -54.74 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.15 Total: -11.31 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.79 -6.75 -42.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016612730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.404 kcal (2) G-P(sol) polarization free energy of solvation -35.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds