Wall clock time and date at job start Tue Mar 31 2020 14:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30277 * 126.27923 * 2 1 4 4 N 1.28678 * 109.37937 * 179.73419 * 3 2 1 5 5 C 1.30278 * 109.37663 * 0.44435 * 4 3 2 6 6 C 1.50698 * 126.27843 * 179.82512 * 5 4 3 7 7 C 1.50703 * 109.47015 * 89.69019 * 6 5 4 8 8 O 1.21286 * 119.99873 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00077 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99952 * 180.02562 * 9 7 6 11 11 H 1.08994 * 115.55315 * 350.69995 * 10 9 7 12 12 C 1.53042 * 117.50136 * 136.39087 * 10 9 7 13 13 C 1.52826 * 117.52239 * 204.97878 * 10 9 7 14 14 C 1.53182 * 117.71256 * 0.15039 * 13 10 9 15 15 C 1.53356 * 108.76719 * 201.11744 * 14 13 10 16 16 N 1.46841 * 108.81280 * 308.69154 * 15 14 13 17 17 C 1.36935 * 120.38291 * 236.92082 * 16 15 14 18 18 H 1.08008 * 120.00058 * 28.89032 * 17 16 15 19 19 C 1.38811 * 120.00102 * 208.88737 * 17 16 15 20 20 N 1.31615 * 120.00055 * 17.84573 * 19 17 16 21 21 Si 1.86809 * 120.00129 * 197.84883 * 19 17 16 22 22 H 1.48503 * 109.46795 * 89.99671 * 21 19 17 23 23 H 1.48495 * 109.47170 * 209.99858 * 21 19 17 24 24 H 1.48502 * 109.46931 * 330.00098 * 21 19 17 25 25 C 1.46850 * 119.23451 * 56.89847 * 16 15 14 26 26 C 1.53178 * 117.71381 * 144.90903 * 13 10 9 27 27 O 1.34356 * 107.43609 * 359.56382 * 5 4 3 28 28 H 1.09001 * 109.47380 * 269.99627 * 1 2 3 29 29 H 1.09001 * 109.47530 * 29.99254 * 1 2 3 30 30 H 1.09003 * 109.47617 * 150.00164 * 1 2 3 31 31 H 1.08993 * 109.47307 * 329.69242 * 6 5 4 32 32 H 1.08995 * 109.46811 * 209.68817 * 6 5 4 33 33 H 0.97004 * 119.99821 * 359.97438 * 9 7 6 34 34 H 1.08999 * 117.49685 * 214.97531 * 12 10 9 35 35 H 1.08993 * 117.50451 * 0.03085 * 12 10 9 36 36 H 1.09005 * 109.58946 * 320.89897 * 14 13 10 37 37 H 1.08996 * 109.58980 * 81.32982 * 14 13 10 38 38 H 1.09002 * 109.58037 * 188.89352 * 15 14 13 39 39 H 1.08995 * 109.69136 * 68.55607 * 15 14 13 40 40 H 0.97001 * 120.00119 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.57994 * 183.29958 * 25 16 15 42 42 H 1.09000 * 109.57924 * 62.89512 * 25 16 15 43 43 H 1.09001 * 109.59156 * 278.66829 * 26 13 10 44 44 H 1.09001 * 109.58995 * 38.94869 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2778 1.0502 0.0000 4 7 3.5090 0.6762 0.0056 5 6 3.5653 -0.6254 -0.0001 6 6 4.8176 -1.4637 -0.0002 7 6 5.2351 -1.7432 1.4206 8 8 4.5804 -1.3044 2.3425 9 7 6.3365 -2.4799 1.6668 10 6 6.7420 -2.7521 3.0480 11 1 6.1998 -2.1989 3.8148 12 6 7.1876 -4.1767 3.3860 13 6 8.2186 -3.0512 3.3046 14 6 9.1669 -3.0413 2.1016 15 6 10.4199 -3.8520 2.4545 16 7 10.9539 -3.3658 3.7331 17 6 12.2434 -2.9128 3.8177 18 1 12.7187 -2.4719 2.9539 19 6 12.9397 -3.0202 5.0138 20 7 12.5211 -3.8487 5.9468 21 14 14.4707 -1.9886 5.2991 22 1 14.0880 -0.6974 5.9250 23 1 15.3991 -2.7190 6.1990 24 1 15.1420 -1.7292 4.0001 25 6 10.0889 -3.3705 4.9198 26 6 8.8293 -2.5500 4.6169 27 8 2.3021 -1.0830 -0.0001 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 5.6146 -0.9263 -0.5140 32 1 4.6243 -2.4053 -0.5141 33 1 6.8602 -2.8306 0.9294 34 1 6.9385 -4.5604 4.3754 35 1 7.1794 -4.9111 2.5807 36 1 8.6709 -3.4913 1.2415 37 1 9.4495 -2.0150 1.8675 38 1 11.1695 -3.7244 1.6735 39 1 10.1616 -4.9071 2.5441 40 1 13.0079 -3.9240 6.7824 41 1 10.6207 -2.9261 5.7612 42 1 9.8078 -4.3952 5.1628 43 1 9.0939 -1.4972 4.5183 44 1 8.1084 -2.6714 5.4254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016612730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:37 Heat of formation + Delta-G solvation = 19.741064 kcal Electronic energy + Delta-G solvation = -26402.864362 eV Core-core repulsion = 22550.522946 eV Total energy + Delta-G solvation = -3852.341416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.30476 -41.22592 -39.80314 -37.26889 -37.15918 -34.78684 -34.46406 -33.39150 -31.89484 -31.51025 -29.92381 -28.29708 -26.22962 -24.56909 -24.04751 -23.63884 -23.12761 -22.42300 -21.57744 -19.80816 -19.01588 -18.44215 -18.19164 -17.81454 -17.36735 -16.74330 -16.51368 -15.95251 -15.74735 -15.55042 -15.33293 -15.02789 -14.88031 -14.70540 -14.17261 -13.99906 -13.79046 -13.61635 -13.51989 -13.47101 -13.25066 -13.09959 -12.97240 -12.87730 -12.59616 -12.53307 -12.24995 -12.03609 -12.01127 -11.76818 -11.41054 -11.36398 -11.21707 -10.75431 -10.53467 -10.46530 -9.72530 -8.61468 -7.85650 -5.31497 0.04566 1.13277 1.28238 1.38589 1.46078 1.48574 1.56219 2.03033 2.51760 2.77713 2.93665 3.29076 3.37318 3.54224 3.66171 3.81219 3.82259 3.88548 3.99226 4.10201 4.14633 4.34198 4.40649 4.53132 4.55145 4.55391 4.63669 4.71855 4.74814 4.86114 4.91097 4.95640 5.03932 5.05755 5.09738 5.18573 5.32521 5.40807 5.45022 5.57373 5.66977 5.78419 6.40090 6.42155 7.08882 7.17312 7.19624 7.90490 8.40607 9.19244 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030875 B = 0.002224 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.674512 B =12584.598191 C =12814.854967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.171 3.829 3 N -0.333 5.333 4 N -0.313 5.313 5 C 0.180 3.820 6 C -0.038 4.038 7 C 0.521 3.479 8 O -0.586 6.586 9 N -0.674 5.674 10 C 0.083 3.917 11 H 0.113 0.887 12 C -0.165 4.165 13 C -0.114 4.114 14 C -0.083 4.083 15 C 0.143 3.857 16 N -0.609 5.609 17 C -0.259 4.259 18 H 0.066 0.934 19 C -0.052 4.052 20 N -0.933 5.933 21 Si 0.962 3.038 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.267 1.267 25 C 0.181 3.819 26 C -0.096 4.096 27 O -0.227 6.227 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.422 0.578 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.019 0.981 40 H 0.249 0.751 41 H 0.051 0.949 42 H 0.001 0.999 43 H 0.045 0.955 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.545 0.283 -16.329 27.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.040 4.040 3 N -0.180 5.180 4 N -0.159 5.159 5 C -0.033 4.033 6 C -0.078 4.078 7 C 0.307 3.693 8 O -0.466 6.466 9 N -0.325 5.325 10 C -0.023 4.023 11 H 0.131 0.869 12 C -0.203 4.203 13 C -0.116 4.116 14 C -0.122 4.122 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.390 4.390 18 H 0.084 0.916 19 C -0.247 4.247 20 N -0.580 5.580 21 Si 0.791 3.209 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.192 1.192 25 C 0.055 3.945 26 C -0.136 4.136 27 O -0.106 6.106 28 H 0.131 0.869 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.190 0.810 32 H 0.194 0.806 33 H 0.261 0.739 34 H 0.115 0.885 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.019 0.981 43 H 0.064 0.936 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.553 1.805 -15.580 27.470 hybrid contribution 1.082 -0.795 0.738 1.532 sum -21.470 1.010 -14.842 26.120 Atomic orbital electron populations 1.20739 0.76389 1.07657 1.06758 1.29089 0.99519 0.78722 0.96628 1.74311 0.96338 1.27261 1.20044 1.74276 1.13145 1.10581 1.17891 1.27494 0.85794 0.91112 0.98856 1.20359 0.89433 1.02858 0.95180 1.20590 0.80316 0.77332 0.91060 1.90762 1.55134 1.52776 1.47945 1.45094 1.26837 1.52649 1.07923 1.21599 0.96315 0.99394 0.84987 0.86939 1.23627 1.01177 0.91576 1.03919 1.21810 0.89452 1.02913 0.97385 1.21478 0.95116 1.00577 0.95029 1.21036 0.94506 0.94987 0.87671 1.44242 1.09377 1.73632 1.05954 1.19517 0.90236 1.31580 0.97662 0.91615 1.25773 1.00883 0.99414 0.98670 1.70174 1.42571 1.37238 1.07975 0.85341 0.79525 0.78224 0.77830 1.21600 1.22264 1.19156 1.20506 0.88792 0.95110 0.90082 1.21635 0.97618 0.99132 0.95170 1.84761 1.17462 1.38634 1.69785 0.86902 0.86003 0.86248 0.80987 0.80575 0.73901 0.88479 0.86430 0.88798 0.92416 0.92610 0.96251 0.94208 0.93070 0.98137 0.93616 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 71.23 0.75 0.34 16 2 C 0.17 3.37 8.48 88.34 0.75 4.12 16 3 N -0.33 -9.04 12.22 -165.51 -2.02 -11.07 16 4 N -0.31 -8.94 12.22 -165.51 -2.02 -10.97 16 5 C 0.18 3.97 6.97 88.34 0.62 4.59 16 6 C -0.04 -0.47 6.33 29.10 0.18 -0.29 16 7 C 0.52 11.07 7.82 87.66 0.69 11.75 16 8 O -0.59 -19.23 15.60 -3.05 -0.05 -19.27 16 9 N -0.67 -12.24 5.35 -442.74 -2.37 -14.61 16 10 C 0.08 2.09 6.14 44.95 0.28 2.36 16 11 H 0.11 3.38 7.40 -2.39 -0.02 3.36 16 12 C -0.16 -3.96 9.87 30.56 0.30 -3.66 16 13 C -0.11 -3.34 1.94 -52.17 -0.10 -3.45 16 14 C -0.08 -2.32 5.37 30.77 0.17 -2.16 16 15 C 0.14 5.41 6.52 86.43 0.56 5.97 16 16 N -0.61 -29.69 2.94 -698.89 -2.05 -31.74 16 17 C -0.26 -14.08 9.54 84.03 0.80 -13.28 16 18 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 19 C -0.05 -2.90 4.89 84.86 0.41 -2.49 16 20 N -0.93 -55.25 11.23 21.65 0.24 -55.01 16 21 Si 0.96 44.99 29.59 68.60 2.03 47.02 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 C 0.18 8.63 5.40 86.43 0.47 9.09 16 26 C -0.10 -3.61 5.83 30.77 0.18 -3.43 16 27 O -0.23 -4.74 10.87 -3.57 -0.04 -4.78 16 28 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.17 1.15 8.14 -2.39 -0.02 1.14 16 32 H 0.18 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.42 4.57 7.12 -92.71 -0.66 3.91 16 34 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.09 1.74 6.75 -2.38 -0.02 1.72 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 2.06 7.92 -2.39 -0.02 2.04 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 41 H 0.05 2.82 5.93 -2.39 -0.01 2.81 16 42 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.06 2.17 8.11 -2.39 -0.02 2.15 16 Total: -1.00 -83.45 365.93 0.14 -83.31 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.37 Total: 7.64 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 6.05 Total: 9.48 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -8.22 Total: -123.39 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.09 Total: -24.05 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -83.45 0.14 -83.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016612730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.052 kcal (2) G-P(sol) polarization free energy of solvation -83.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds