Wall clock time and date at job start Tue Mar 31 2020 13:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33225 * 126.01533 * 2 1 4 4 C 1.31535 * 109.75956 * 180.02562 * 3 2 1 5 5 O 1.35208 * 125.49325 * 179.97438 * 4 3 2 6 6 N 1.34944 * 109.01540 * 359.72484 * 4 3 2 7 7 H 0.96998 * 126.54490 * 180.27370 * 6 4 3 8 8 C 1.36715 * 126.01943 * 179.97438 * 2 1 3 9 9 C 1.46383 * 126.82675 * 359.97438 * 8 2 1 10 10 O 1.21731 * 119.99871 * 0.02562 * 9 8 2 11 11 N 1.34782 * 119.99708 * 180.02562 * 9 8 2 12 12 C 1.46495 * 119.99507 * 180.02562 * 11 9 8 13 13 H 1.09003 * 115.56928 * 350.71028 * 12 11 9 14 14 C 1.53040 * 117.50335 * 136.41560 * 12 11 9 15 15 C 1.52822 * 117.50158 * 205.00150 * 12 11 9 16 16 C 1.53178 * 117.71571 * 144.90243 * 15 12 11 17 17 C 1.53354 * 108.76913 * 158.87857 * 16 15 12 18 18 N 1.46839 * 108.81141 * 51.30384 * 17 16 15 19 19 C 1.36943 * 120.37901 * 123.11274 * 18 17 16 20 20 H 1.07999 * 119.99950 * 331.22649 * 19 18 17 21 21 C 1.38811 * 120.00018 * 151.22549 * 19 18 17 22 22 N 1.31614 * 120.00086 * 342.28730 * 21 19 18 23 23 Si 1.86795 * 119.99850 * 162.29129 * 21 19 18 24 24 H 1.48497 * 109.47278 * 269.99729 * 23 21 19 25 25 H 1.48506 * 109.47387 * 29.99734 * 23 21 19 26 26 H 1.48499 * 109.47414 * 150.00053 * 23 21 19 27 27 C 1.46844 * 119.24249 * 303.37737 * 18 17 16 28 28 C 1.52871 * 109.07030 * 56.58865 * 27 18 17 29 29 H 1.09000 * 109.47188 * 269.99750 * 1 2 3 30 30 H 1.08996 * 109.47741 * 30.00292 * 1 2 3 31 31 H 1.09007 * 109.46945 * 150.00425 * 1 2 3 32 32 H 0.96705 * 113.99533 * 90.02139 * 5 4 3 33 33 H 0.96995 * 120.00375 * 0.02562 * 11 9 8 34 34 H 1.09003 * 117.50143 * 0.02562 * 14 12 11 35 35 H 1.08991 * 117.53174 * 214.93980 * 14 12 11 36 36 H 1.09003 * 109.59144 * 39.08914 * 16 15 12 37 37 H 1.09007 * 109.58622 * 278.65860 * 16 15 12 38 38 H 1.08997 * 109.57212 * 291.50879 * 17 16 15 39 39 H 1.08995 * 109.58051 * 171.10607 * 17 16 15 40 40 H 0.96999 * 120.00333 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.57737 * 176.41847 * 27 18 17 42 42 H 1.08990 * 109.58155 * 296.82534 * 27 18 17 43 43 H 1.09009 * 109.66214 * 189.04410 * 28 27 18 44 44 H 1.09001 * 109.45030 * 68.65491 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5531 0.7094 -0.0006 5 8 4.6149 1.5465 -0.0012 6 7 3.6181 -0.6385 0.0052 7 1 4.4243 -1.1778 0.0099 8 6 2.3110 -1.1058 0.0005 9 6 1.8792 -2.5045 0.0016 10 8 0.6924 -2.7751 0.0018 11 7 2.7958 -3.4926 0.0025 12 6 2.3637 -4.8924 0.0031 13 1 1.2977 -5.0556 0.1615 14 6 3.0951 -5.8582 -0.9319 15 6 3.3292 -5.9288 0.5770 16 6 2.7303 -7.1178 1.3345 17 6 3.7562 -8.2574 1.3546 18 7 5.0388 -7.7314 1.8386 19 6 5.6468 -8.2874 2.9325 20 1 5.0507 -8.7544 3.7025 21 6 7.0293 -8.2507 3.0516 22 7 7.7749 -8.0110 1.9938 23 14 7.8316 -8.5415 4.7132 24 1 7.9847 -7.2459 5.4226 25 1 6.9803 -9.4509 5.5217 26 1 9.1678 -9.1589 4.5165 27 6 5.6592 -6.5987 1.1399 28 6 4.6748 -5.4294 1.1118 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 4.9244 1.7898 0.8821 33 1 3.7415 -3.2770 0.0028 34 1 3.8981 -5.4521 -1.5471 35 1 2.5108 -6.6570 -1.3885 36 1 1.8227 -7.4519 0.8317 37 1 2.4957 -6.8193 2.3564 38 1 3.8809 -8.6542 0.3471 39 1 3.4108 -9.0481 2.0206 40 1 8.7410 -7.9858 2.0769 41 1 6.5659 -6.2980 1.6648 42 1 5.9053 -6.8898 0.1188 43 1 5.0578 -4.6431 0.4611 44 1 4.5450 -5.0400 2.1216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016674811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:29 Heat of formation + Delta-G solvation = 3.859011 kcal Electronic energy + Delta-G solvation = -26948.339481 eV Core-core repulsion = 23095.309367 eV Total energy + Delta-G solvation = -3853.030114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.39774 -41.03150 -39.66684 -38.39957 -37.15413 -35.04441 -34.10374 -33.18119 -31.80305 -31.77778 -29.96554 -28.15826 -26.24294 -24.57418 -24.04366 -23.31708 -22.77003 -21.74493 -21.17418 -20.46067 -19.81292 -18.98472 -18.35100 -17.49551 -17.29584 -16.84971 -16.68466 -16.04421 -15.80039 -15.51377 -15.35257 -15.00622 -14.89142 -14.68866 -14.23765 -14.17109 -13.80261 -13.63718 -13.38917 -13.32858 -13.09949 -13.04383 -12.91903 -12.61512 -12.56203 -12.31525 -12.00321 -11.78492 -11.55537 -11.41486 -11.27769 -11.22946 -11.09172 -10.70554 -10.49944 -9.87209 -9.46266 -8.62695 -7.87459 -5.33225 0.00130 1.27180 1.45752 1.47488 1.53254 1.55908 1.89157 2.07257 2.50721 2.77696 2.93980 3.27228 3.58883 3.64159 3.78763 3.82526 3.86691 3.96508 4.02891 4.11390 4.40078 4.52233 4.61316 4.70355 4.82720 4.83904 4.85307 4.92363 4.94064 4.98909 5.00585 5.07596 5.21993 5.28834 5.36262 5.40149 5.45781 5.52978 5.65270 5.73839 5.77470 6.27321 6.40563 6.60978 6.65482 6.98206 7.16342 7.88466 8.38701 9.17481 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015883 B = 0.003019 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.450657 B = 9271.408628 C =10407.812695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.105 3.895 3 N -0.518 5.518 4 C 0.426 3.574 5 O -0.442 6.442 6 N -0.542 5.542 7 H 0.436 0.564 8 C -0.095 4.095 9 C 0.602 3.398 10 O -0.549 6.549 11 N -0.687 5.687 12 C 0.089 3.911 13 H 0.135 0.865 14 C -0.169 4.169 15 C -0.116 4.116 16 C -0.087 4.087 17 C 0.145 3.855 18 N -0.609 5.609 19 C -0.263 4.263 20 H 0.062 0.938 21 C -0.047 4.047 22 N -0.931 5.931 23 Si 0.962 3.038 24 H -0.285 1.285 25 H -0.271 1.271 26 H -0.295 1.295 27 C 0.180 3.820 28 C -0.090 4.090 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.433 0.567 33 H 0.405 0.595 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.018 0.982 39 H 0.051 0.949 40 H 0.250 0.750 41 H 0.055 0.945 42 H -0.002 1.002 43 H 0.070 0.930 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 15.646 -4.822 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.030 4.030 3 N -0.250 5.250 4 C 0.124 3.876 5 O -0.247 6.247 6 N -0.162 5.162 7 H 0.278 0.722 8 C -0.210 4.210 9 C 0.390 3.610 10 O -0.427 6.427 11 N -0.336 5.336 12 C -0.017 4.017 13 H 0.153 0.847 14 C -0.208 4.208 15 C -0.118 4.118 16 C -0.126 4.126 17 C 0.020 3.980 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.080 0.920 21 C -0.243 4.243 22 N -0.577 5.577 23 Si 0.791 3.209 24 H -0.212 1.212 25 H -0.196 1.196 26 H -0.222 1.222 27 C 0.054 3.946 28 C -0.129 4.129 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.295 0.705 33 H 0.241 0.759 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.017 0.983 43 H 0.089 0.911 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.067 16.277 -5.410 19.889 hybrid contribution 2.416 -1.218 1.250 2.980 sum -7.651 15.059 -4.160 17.396 Atomic orbital electron populations 1.20358 0.85213 1.04015 1.03825 1.21259 0.97697 0.86033 0.98053 1.70298 0.99622 1.30777 1.24336 1.20253 0.87550 0.79127 1.00664 1.84812 1.42194 1.60850 1.36820 1.43601 1.08605 1.07873 1.56126 0.72177 1.20562 0.83959 0.94438 1.22045 1.16700 0.85590 0.82705 0.75976 1.90815 1.16859 1.83203 1.51814 1.45190 1.09499 1.04957 1.73927 1.21760 0.97780 0.77465 1.04687 0.84738 1.23635 1.02995 1.01672 0.92459 1.21830 0.96249 0.97772 0.95932 1.21528 0.97691 0.94014 0.99369 1.20991 0.85971 0.94543 0.96529 1.44229 1.21771 1.34400 1.32789 1.19500 0.89532 1.33018 0.97282 0.92006 1.25726 0.97137 1.01485 0.99927 1.70169 1.04066 1.54871 1.28625 0.85342 0.77441 0.77751 0.80372 1.21185 1.19590 1.22217 1.20440 0.94418 0.86030 0.93690 1.21471 0.93821 0.97948 0.99625 0.89731 0.89807 0.89743 0.70475 0.75873 0.88255 0.86953 0.89803 0.92685 0.96413 0.93026 0.94113 0.92696 0.98340 0.91127 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 9.87 71.24 0.70 -0.82 16 2 C 0.10 2.42 7.14 41.99 0.30 2.72 16 3 N -0.52 -12.04 11.22 -301.67 -3.39 -15.42 16 4 C 0.43 7.70 9.43 179.99 1.70 9.40 16 5 O -0.44 -5.43 13.62 -84.89 -1.16 -6.58 16 6 N -0.54 -8.67 6.12 -300.13 -1.84 -10.51 16 7 H 0.44 4.44 8.32 -92.71 -0.77 3.67 16 8 C -0.10 -2.06 7.08 39.80 0.28 -1.78 16 9 C 0.60 14.69 7.78 86.36 0.67 15.36 16 10 O -0.55 -16.25 14.36 -4.45 -0.06 -16.31 16 11 N -0.69 -14.88 5.34 -446.99 -2.39 -17.27 16 12 C 0.09 2.16 6.14 44.95 0.28 2.44 16 13 H 0.14 3.44 7.40 -2.39 -0.02 3.42 16 14 C -0.17 -4.07 9.87 30.56 0.30 -3.77 16 15 C -0.12 -3.34 1.94 -52.17 -0.10 -3.45 16 16 C -0.09 -2.70 5.83 30.77 0.18 -2.53 16 17 C 0.15 5.74 6.52 86.43 0.56 6.30 16 18 N -0.61 -29.36 2.94 -699.85 -2.06 -31.42 16 19 C -0.26 -14.13 9.54 84.03 0.80 -13.33 16 20 H 0.06 3.28 7.89 -2.91 -0.02 3.26 16 21 C -0.05 -2.56 4.89 84.86 0.41 -2.15 16 22 N -0.93 -53.37 11.23 21.65 0.24 -53.13 16 23 Si 0.96 43.81 29.59 68.60 2.03 45.84 16 24 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 27 C 0.18 8.07 5.37 86.27 0.46 8.54 16 28 C -0.09 -2.95 5.36 30.61 0.16 -2.78 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.83 6.47 -2.38 -0.02 1.82 16 32 H 0.43 0.67 9.06 -74.05 -0.67 0.00 16 33 H 0.40 7.16 6.36 -92.71 -0.59 6.57 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.08 2.13 8.10 -2.39 -0.02 2.11 16 37 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 40 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 41 H 0.05 2.83 5.94 -2.39 -0.01 2.82 16 42 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.07 1.86 6.75 -2.38 -0.02 1.84 16 44 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -71.41 360.13 -2.86 -74.27 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.96 Total: 16.39 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 6.72 Total: 14.15 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -9.43 Total: -127.75 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -1.22 Total: -22.90 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -71.41 -2.86 -74.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016674811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.129 kcal (2) G-P(sol) polarization free energy of solvation -71.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds