Wall clock time and date at job start Tue Mar 31 2020 12:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.35838 * 126.46005 * 2 1 4 4 H 0.97001 * 124.91538 * 0.02562 * 3 2 1 5 5 N 1.28453 * 110.17341 * 180.02562 * 3 2 1 6 6 C 1.31935 * 110.20761 * 0.02562 * 5 3 2 7 7 C 1.47526 * 126.46213 * 179.97438 * 6 5 3 8 8 O 1.21592 * 119.99900 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99558 * 0.02562 * 7 6 5 10 10 C 1.46506 * 119.99370 * 179.97438 * 9 7 6 11 11 C 1.53145 * 109.43146 * 205.08454 * 10 9 7 12 12 C 1.53702 * 108.87937 * 186.08351 * 11 10 9 13 13 H 1.08995 * 112.10067 * 188.25380 * 12 11 10 14 14 C 1.54610 * 107.83147 * 312.23728 * 12 11 10 15 15 C 1.54303 * 104.75250 * 88.66345 * 14 12 11 16 16 C 1.54616 * 104.75294 * 359.97438 * 15 14 12 17 17 H 1.09004 * 112.19110 * 146.79954 * 16 15 14 18 18 C 1.53146 * 109.39985 * 84.88903 * 10 9 7 19 19 N 1.48292 * 107.26910 * 64.01204 * 12 11 10 20 20 C 1.36945 * 128.20858 * 107.37310 * 19 12 11 21 21 H 1.07993 * 119.99778 * 15.13323 * 20 19 12 22 22 C 1.38810 * 119.99626 * 195.13002 * 20 19 12 23 23 N 1.31612 * 120.00477 * 9.28212 * 22 20 19 24 24 Si 1.86810 * 119.99707 * 189.28410 * 22 20 19 25 25 H 1.48500 * 109.46822 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47020 * 120.00084 * 24 22 20 27 27 H 1.48500 * 109.46644 * 240.00082 * 24 22 20 28 28 C 1.35789 * 126.46300 * 180.30741 * 2 1 3 29 29 O 1.36080 * 127.26785 * 0.02562 * 28 2 1 30 30 H 1.09002 * 109.47227 * 90.02454 * 1 2 3 31 31 H 1.09002 * 109.46813 * 210.02099 * 1 2 3 32 32 H 1.08996 * 109.46932 * 330.01740 * 1 2 3 33 33 H 0.96995 * 120.00138 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.43406 * 324.99533 * 10 9 7 35 35 H 1.08995 * 109.57423 * 305.91254 * 11 10 9 36 36 H 1.09008 * 109.56880 * 66.27006 * 11 10 9 37 37 H 1.09000 * 110.37971 * 207.47947 * 14 12 11 38 38 H 1.08992 * 110.38165 * 329.72958 * 14 12 11 39 39 H 1.09005 * 110.38487 * 118.81306 * 15 14 12 40 40 H 1.08999 * 110.38614 * 241.17972 * 15 14 12 41 41 H 1.09000 * 109.56740 * 293.75350 * 18 10 9 42 42 H 1.09001 * 109.56675 * 54.11237 * 18 10 9 43 43 H 0.97007 * 119.99972 * 179.97438 * 23 22 20 44 44 H 0.96701 * 114.00309 * 270.15932 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0044 2.0117 0.0004 5 7 3.5472 0.7323 -0.0005 6 6 3.6374 -0.5840 -0.0015 7 6 4.8810 -1.3775 -0.0028 8 8 4.8271 -2.5923 -0.0041 9 7 6.0770 -0.7560 -0.0027 10 6 7.3120 -1.5441 -0.0035 11 6 8.4452 -0.7159 0.6090 12 6 9.7636 -1.4926 0.4635 13 1 10.5807 -1.0192 1.0079 14 6 9.5123 -2.9440 0.9332 15 6 9.0355 -3.6891 -0.3310 16 6 9.0427 -2.6178 -1.4458 17 1 9.2971 -3.0379 -2.4189 18 6 7.6713 -1.9253 -1.4426 19 7 10.0409 -1.6211 -0.9876 20 6 10.9922 -0.9723 -1.7288 21 1 11.8047 -0.4599 -1.2352 22 6 10.9121 -0.9733 -3.1146 23 7 9.8339 -1.4357 -3.7112 24 14 12.3347 -0.3182 -4.1329 25 1 13.4202 0.1405 -3.2293 26 1 12.8478 -1.3954 -5.0169 27 1 11.8665 0.8215 -4.9618 28 6 2.3140 -1.0921 -0.0059 29 8 1.9327 -2.3983 -0.0134 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8901 0.5135 33 1 6.1199 0.2130 -0.0021 34 1 7.1649 -2.4493 0.5856 35 1 8.5238 0.2378 0.0873 36 1 8.2396 -0.5404 1.6651 37 1 10.4349 -3.3863 1.3093 38 1 8.7406 -2.9658 1.7026 39 1 9.7233 -4.4981 -0.5771 40 1 8.0276 -4.0778 -0.1852 41 1 6.9177 -2.6058 -1.8390 42 1 7.7144 -1.0268 -2.0583 43 1 9.7778 -1.4360 -4.6796 44 1 1.8198 -2.7802 0.8679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021232467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:55 Heat of formation + Delta-G solvation = 24.580422 kcal Electronic energy + Delta-G solvation = -27754.737622 eV Core-core repulsion = 23902.606056 eV Total energy + Delta-G solvation = -3852.131566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.82301 -39.78587 -38.32502 -37.24978 -34.32258 -32.94322 -32.50889 -31.22683 -30.18160 -29.47157 -29.11595 -27.08525 -24.95937 -23.87858 -23.23496 -21.50920 -21.30960 -19.89385 -19.19155 -18.57813 -18.34410 -17.30951 -17.09061 -16.33096 -16.05463 -15.88180 -14.68972 -14.34979 -14.25613 -14.14790 -13.99603 -13.89629 -13.27598 -13.00602 -12.94258 -12.81382 -12.72683 -12.01674 -11.87833 -11.79615 -11.41624 -11.31473 -10.97996 -10.77729 -10.59974 -10.57228 -10.48079 -10.04137 -9.73264 -9.69903 -9.55694 -9.48245 -9.32472 -9.25051 -8.89252 -8.65994 -8.28632 -6.76956 -5.70897 -3.06132 1.46053 1.76178 2.53198 3.40736 3.45571 3.47680 3.49704 3.60644 4.15770 4.39945 4.49850 4.50951 4.84039 5.11866 5.25691 5.36100 5.43273 5.45830 5.51839 5.60144 5.81881 5.86394 5.95409 6.00524 6.04008 6.09871 6.28170 6.37580 6.53128 6.60511 6.68613 6.75168 6.77397 6.83319 6.94218 7.05312 7.12660 7.28669 7.54081 7.60507 7.64199 7.68742 7.84313 8.00607 8.30065 8.59104 9.18894 9.81241 10.60606 11.41083 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019167 B = 0.003307 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.524587 B = 8465.842553 C = 9062.489709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.016 4.016 3 N -0.376 5.376 4 H 0.449 0.551 5 N -0.244 5.244 6 C -0.021 4.021 7 C 0.596 3.404 8 O -0.527 6.527 9 N -0.707 5.707 10 C 0.147 3.853 11 C -0.135 4.135 12 C 0.151 3.849 13 H 0.069 0.931 14 C -0.131 4.131 15 C -0.145 4.145 16 C 0.182 3.818 17 H 0.110 0.890 18 C -0.120 4.120 19 N -0.584 5.584 20 C -0.223 4.223 21 H 0.075 0.925 22 C -0.005 4.005 23 N -0.909 5.909 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.045 3.955 29 O -0.450 6.450 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.252 0.748 44 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.591 4.079 10.944 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.142 4.142 3 N -0.094 5.094 4 H 0.294 0.706 5 N -0.081 5.081 6 C -0.184 4.184 7 C 0.379 3.621 8 O -0.402 6.402 9 N -0.357 5.357 10 C 0.044 3.956 11 C -0.175 4.175 12 C 0.043 3.957 13 H 0.088 0.912 14 C -0.170 4.170 15 C -0.184 4.184 16 C 0.075 3.925 17 H 0.128 0.872 18 C -0.161 4.161 19 N -0.305 5.305 20 C -0.351 4.351 21 H 0.093 0.907 22 C -0.202 4.202 23 N -0.555 5.555 24 Si 0.739 3.261 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 C -0.010 4.010 29 O -0.255 6.255 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.234 0.766 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -16.811 4.192 10.069 20.039 hybrid contribution -0.102 0.741 -0.165 0.766 sum -16.913 4.933 9.904 20.211 Atomic orbital electron populations 1.20268 0.86067 1.03699 1.03530 1.21547 0.95353 0.87522 1.09782 1.43042 1.02897 1.09170 1.54268 0.70625 1.73642 1.01528 1.14371 1.18578 1.22637 0.95821 0.89881 1.10036 1.16779 0.81600 0.86513 0.77212 1.90803 1.86569 1.12560 1.50218 1.46223 1.05585 1.10645 1.73244 1.21390 0.81192 0.93995 0.99040 1.22508 0.96680 0.99967 0.98362 1.21498 0.93135 0.93075 0.88039 0.91240 1.22643 0.99666 0.97457 0.97272 1.22814 0.99515 0.99033 0.97058 1.21483 0.86805 0.87304 0.96908 0.87216 1.22386 0.98360 1.01735 0.93606 1.45223 1.37330 1.45809 1.02125 1.19016 1.00629 1.27453 0.88027 0.90731 1.24837 0.97317 1.01398 0.96671 1.69896 1.26032 1.51216 1.08350 0.86117 0.81701 0.78030 0.80296 1.20553 1.21785 1.21944 1.17814 0.89105 0.85087 1.09040 1.84925 1.88717 1.19118 1.32752 0.90186 0.89587 0.91091 0.76628 0.89833 0.91593 0.93354 0.92777 0.92664 0.92925 0.92360 0.93750 0.90765 0.93790 0.76057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.44 36.00 0.38 -0.04 16 2 C -0.02 -0.15 7.27 -81.70 -0.59 -0.75 16 3 N -0.38 -3.45 6.87 33.71 0.23 -3.22 16 4 H 0.45 2.22 8.96 -190.45 -1.71 0.51 16 5 N -0.24 -3.20 11.91 33.45 0.40 -2.80 16 6 C -0.02 -0.33 7.13 -82.69 -0.59 -0.92 16 7 C 0.60 10.89 7.78 -12.47 -0.10 10.79 16 8 O -0.53 -11.08 16.19 3.09 0.05 -11.03 16 9 N -0.71 -12.45 5.07 -54.70 -0.28 -12.73 16 10 C 0.15 2.83 2.10 -67.78 -0.14 2.69 16 11 C -0.13 -2.49 5.09 -26.29 -0.13 -2.63 16 12 C 0.15 3.07 4.32 -65.73 -0.28 2.79 16 13 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.13 -2.41 5.98 -25.20 -0.15 -2.56 16 15 C -0.15 -2.94 5.98 -25.20 -0.15 -3.09 16 16 C 0.18 4.35 3.13 -65.75 -0.21 4.14 16 17 H 0.11 3.00 6.34 -51.93 -0.33 2.67 16 18 C -0.12 -2.74 5.11 -26.32 -0.13 -2.88 16 19 N -0.58 -14.40 2.82 -152.78 -0.43 -14.83 16 20 C -0.22 -6.04 10.38 -15.06 -0.16 -6.20 16 21 H 0.07 1.97 7.85 -52.49 -0.41 1.56 16 22 C -0.01 -0.14 5.42 -17.43 -0.09 -0.24 16 23 N -0.91 -26.09 10.61 55.49 0.59 -25.50 16 24 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 C 0.05 0.61 7.28 -39.11 -0.28 0.32 16 29 O -0.45 -5.85 13.19 -22.19 -0.29 -6.14 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.40 6.42 8.32 -40.82 -0.34 6.08 16 34 H 0.08 1.66 4.96 -51.93 -0.26 1.40 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.91 7.04 -51.93 -0.37 0.55 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.14 7.04 -51.93 -0.37 0.77 16 41 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.92 8.01 -51.93 -0.42 1.50 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.38 3.25 9.07 45.56 0.41 3.66 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -34.29 354.15 -8.78 -43.07 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.72 Total: 9.54 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -2.64 Total: 1.43 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.51 Total: -59.08 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.24 Total: -17.17 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.29 -8.78 -43.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021232467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.653 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds