Wall clock time and date at job start Tue Mar 31 2020 14:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30274 * 126.28377 * 2 1 4 4 N 1.28662 * 109.38454 * 179.73297 * 3 2 1 5 5 C 1.30276 * 109.37935 * 0.44613 * 4 3 2 6 6 C 1.50703 * 126.28506 * 179.82558 * 5 4 3 7 7 C 1.50701 * 109.47064 * 89.68806 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.49619 * 126.07349 * 359.69487 * 9 7 6 11 11 C 1.51761 * 102.37903 * 154.30016 * 10 9 7 12 12 H 1.08998 * 111.73406 * 288.24727 * 11 10 9 13 13 C 1.51564 * 123.23388 * 151.77820 * 11 10 9 14 14 C 1.56339 * 101.80916 * 208.16616 * 13 11 10 15 15 C 1.56004 * 105.77069 * 25.43802 * 14 13 11 16 16 H 1.08998 * 110.64630 * 248.27684 * 15 14 13 17 17 N 1.46503 * 110.52531 * 125.58464 * 15 14 13 18 18 C 1.36936 * 119.99760 * 90.43762 * 17 15 14 19 19 H 1.07999 * 120.00323 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99791 * 179.97438 * 18 17 15 21 21 N 1.31622 * 119.99940 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00120 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47436 * 89.99436 * 22 20 18 24 24 H 1.48493 * 109.47219 * 209.99627 * 22 20 18 25 25 H 1.48501 * 109.46885 * 329.99616 * 22 20 18 26 26 C 1.49706 * 103.98381 * 6.96051 * 15 14 13 27 27 H 1.09000 * 108.54877 * 76.80934 * 26 15 14 28 28 C 1.49286 * 126.06832 * 180.02562 * 9 7 6 29 29 O 1.34361 * 126.28414 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46904 * 270.00200 * 1 2 3 31 31 H 1.09000 * 109.46808 * 29.99154 * 1 2 3 32 32 H 1.08995 * 109.47209 * 149.99487 * 1 2 3 33 33 H 1.09002 * 109.47152 * 329.68899 * 6 5 4 34 34 H 1.09001 * 109.46980 * 209.68999 * 6 5 4 35 35 H 1.08997 * 110.80162 * 272.62887 * 10 9 7 36 36 H 1.08999 * 110.80742 * 36.13098 * 10 9 7 37 37 H 1.08998 * 110.96167 * 90.03991 * 13 11 10 38 38 H 1.09000 * 110.99310 * 326.30734 * 13 11 10 39 39 H 1.08995 * 110.19296 * 266.36035 * 14 13 11 40 40 H 1.09008 * 110.19001 * 144.50980 * 14 13 11 41 41 H 0.97004 * 120.00107 * 270.43070 * 17 15 14 42 42 H 0.96999 * 119.99981 * 180.02562 * 21 20 18 43 43 H 1.09002 * 110.39521 * 292.37249 * 28 9 7 44 44 H 1.08992 * 110.39943 * 54.66649 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5090 0.6761 0.0057 5 6 3.5654 -0.6254 -0.0001 6 6 4.8177 -1.4638 -0.0002 7 6 5.2352 -1.7433 1.4206 8 8 4.5800 -1.3053 2.3424 9 7 6.3360 -2.4810 1.6668 10 6 7.2353 -3.0916 0.6387 11 6 8.5541 -3.1981 1.3821 12 1 9.0145 -2.2211 1.5293 13 6 9.5980 -4.2531 1.0749 14 6 10.3044 -4.4171 2.4600 15 6 9.2497 -3.9896 3.5271 16 1 9.5489 -3.0606 4.0125 17 7 9.0650 -5.0504 4.5205 18 6 9.8350 -5.0697 5.6527 19 1 10.5788 -4.3033 5.8131 20 6 9.6596 -6.0745 6.5942 21 7 10.4001 -6.0934 7.6822 22 14 8.3736 -7.4006 6.3165 23 1 8.9853 -8.5373 5.5822 24 1 7.8617 -7.8759 7.6269 25 1 7.2516 -6.8429 5.5195 26 6 7.9953 -3.7877 2.7353 27 1 7.5739 -4.7646 2.4982 28 6 6.8706 -2.8397 3.0137 29 8 2.3021 -1.0831 -0.0005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8901 -0.5137 32 1 -0.3633 -0.8899 -0.5139 33 1 5.6147 -0.9264 -0.5140 34 1 4.6244 -2.4055 -0.5141 35 1 6.8738 -4.0768 0.3443 36 1 7.3318 -2.4383 -0.2285 37 1 10.2992 -3.8994 0.3192 38 1 9.1297 -5.1867 0.7631 39 1 11.1792 -3.7695 2.5152 40 1 10.5947 -5.4566 2.6135 41 1 8.3971 -5.7389 4.3763 42 1 10.2778 -6.7958 8.3400 43 1 7.2410 -1.9508 3.5244 44 1 6.0998 -3.3266 3.6110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026258593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:02 Heat of formation + Delta-G solvation = 40.134091 kcal Electronic energy + Delta-G solvation = -26639.915288 eV Core-core repulsion = 22788.458180 eV Total energy + Delta-G solvation = -3851.457108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.48780 -40.77395 -38.95652 -36.41959 -35.58877 -33.94691 -33.53595 -31.60282 -31.23367 -29.65489 -28.83794 -27.46786 -25.74367 -23.81758 -23.05015 -22.75667 -22.42523 -20.44118 -19.64393 -19.36413 -17.97331 -17.57958 -17.44748 -16.74805 -16.72780 -15.83845 -15.30503 -15.01646 -14.77586 -14.59009 -14.32637 -14.06284 -13.66149 -13.62885 -13.23270 -13.05091 -12.88535 -12.69299 -12.63021 -12.56216 -12.12015 -12.08666 -11.95567 -11.65501 -11.24155 -11.22408 -10.96264 -10.87742 -10.59874 -10.45357 -10.24241 -10.11472 -9.90919 -9.70535 -9.61510 -8.98584 -8.87563 -7.33655 -5.81389 -3.17867 0.82359 1.85236 2.09720 2.32512 2.66393 3.33487 3.35702 3.42185 3.43789 3.88349 4.00576 4.16730 4.36705 4.54496 4.63035 4.66178 4.82481 4.84183 4.88926 5.01514 5.07333 5.11591 5.17308 5.18510 5.25004 5.41266 5.44612 5.45858 5.52776 5.61859 5.71369 5.76659 5.86474 5.95984 5.99316 6.10817 6.17005 6.28118 6.44556 6.64285 6.86714 7.22575 7.83666 7.94112 8.03174 8.37557 9.14937 9.87377 10.06073 11.36766 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019531 B = 0.002649 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.310937 B =10567.165958 C =11415.351658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.164 3.836 3 N -0.288 5.288 4 N -0.272 5.272 5 C 0.184 3.816 6 C -0.042 4.042 7 C 0.533 3.467 8 O -0.531 6.531 9 N -0.621 5.621 10 C 0.112 3.888 11 C -0.126 4.126 12 H 0.092 0.908 13 C -0.101 4.101 14 C -0.143 4.143 15 C 0.204 3.796 16 H 0.066 0.934 17 N -0.744 5.744 18 C -0.246 4.246 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.932 5.932 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 C -0.125 4.125 27 H 0.073 0.927 28 C 0.135 3.865 29 O -0.221 6.221 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.361 0.639 42 H 0.260 0.740 43 H 0.075 0.925 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.817 7.305 -22.687 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 N -0.136 5.136 4 N -0.119 5.119 5 C -0.028 4.028 6 C -0.083 4.083 7 C 0.319 3.681 8 O -0.407 6.407 9 N -0.356 5.356 10 C -0.009 4.009 11 C -0.146 4.146 12 H 0.110 0.890 13 C -0.139 4.139 14 C -0.183 4.183 15 C 0.093 3.907 16 H 0.084 0.916 17 N -0.386 5.386 18 C -0.376 4.376 19 H 0.109 0.891 20 C -0.190 4.190 21 N -0.579 5.579 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.145 4.145 27 H 0.091 0.909 28 C 0.014 3.986 29 O -0.100 6.100 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.159 0.841 34 H 0.145 0.855 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.730 8.873 -21.974 27.388 hybrid contribution -1.181 -2.338 -0.034 2.620 sum -14.912 6.535 -22.008 27.376 Atomic orbital electron populations 1.20369 0.80098 1.05635 1.05454 1.28007 0.97845 0.79550 0.99281 1.74384 0.95965 1.25585 1.17650 1.74358 1.12341 1.08888 1.16290 1.26850 0.84673 0.91287 0.99954 1.20082 0.90015 1.00526 0.97643 1.19590 0.80052 0.78523 0.89962 1.90794 1.52899 1.51025 1.46001 1.49789 1.25602 1.51337 1.08907 1.21948 0.89612 0.98568 0.90795 1.22643 0.94415 1.00772 0.96762 0.89000 1.21883 0.96628 0.97149 0.98270 1.23752 0.98888 1.02745 0.92959 1.19916 0.89726 0.92638 0.88408 0.91642 1.42854 1.44318 1.29634 1.21781 1.19076 1.13557 1.09974 0.94943 0.89101 1.24682 0.99034 0.98730 0.96572 1.69698 1.42138 1.35347 1.10760 0.86570 0.82129 0.82809 0.77112 1.21105 1.21734 1.20380 1.22158 0.96174 0.98891 0.97289 0.90866 1.21015 0.95852 0.98884 0.82850 1.84745 1.17378 1.38361 1.69516 0.88148 0.87466 0.88863 0.84112 0.85469 0.90428 0.90160 0.91821 0.91562 0.92076 0.90678 0.80573 0.93011 0.90694 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.01 0.38 0.09 16 2 C 0.16 1.75 8.48 -12.94 -0.11 1.64 16 3 N -0.29 -3.96 12.22 32.55 0.40 -3.56 16 4 N -0.27 -3.94 12.22 32.55 0.40 -3.54 16 5 C 0.18 2.24 6.97 -12.94 -0.09 2.15 16 6 C -0.04 -0.36 5.38 -29.03 -0.16 -0.51 16 7 C 0.53 6.82 7.87 -10.98 -0.09 6.73 16 8 O -0.53 -9.43 16.40 5.56 0.09 -9.34 16 9 N -0.62 -7.21 3.42 -171.44 -0.59 -7.80 16 10 C 0.11 0.91 6.48 -2.93 -0.02 0.89 16 11 C -0.13 -1.29 3.15 -89.33 -0.28 -1.57 16 12 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.10 -1.05 6.59 -25.66 -0.17 -1.22 16 14 C -0.14 -2.08 6.74 -23.33 -0.16 -2.24 16 15 C 0.20 3.49 3.45 -67.95 -0.23 3.26 16 16 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 17 N -0.74 -16.45 4.90 -53.45 -0.26 -16.71 16 18 C -0.25 -6.65 10.44 -15.06 -0.16 -6.81 16 19 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 22 Si 0.88 21.63 27.74 -169.99 -4.71 16.92 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.39 6.52 56.52 0.37 -6.03 16 26 C -0.13 -1.72 2.22 -91.24 -0.20 -1.92 16 27 H 0.07 1.03 7.72 -51.93 -0.40 0.63 16 28 C 0.13 1.90 6.83 -4.12 -0.03 1.87 16 29 O -0.22 -2.60 10.87 5.39 0.06 -2.54 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.14 0.82 7.91 -51.93 -0.41 0.41 16 34 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.42 7.58 -51.93 -0.39 0.03 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.25 7.98 -51.92 -0.41 0.83 16 41 H 0.36 7.91 5.54 -40.82 -0.23 7.69 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -36.96 363.84 -6.28 -43.23 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.51 Total: 3.44 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.41 Total: 2.45 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.72 Total: -59.64 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.15 Total: -11.89 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.96 -6.28 -43.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026258593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.367 kcal (2) G-P(sol) polarization free energy of solvation -36.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds