Wall clock time and date at job start Tue Mar 31 2020 14:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30274 * 126.28377 * 2 1 4 4 N 1.28662 * 109.38454 * 179.73297 * 3 2 1 5 5 C 1.30276 * 109.37935 * 0.44613 * 4 3 2 6 6 C 1.50703 * 126.28506 * 179.82558 * 5 4 3 7 7 C 1.50701 * 109.47064 * 89.68806 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.49619 * 126.07349 * 359.69487 * 9 7 6 11 11 C 1.51761 * 102.37903 * 154.30016 * 10 9 7 12 12 H 1.08998 * 111.73406 * 288.24727 * 11 10 9 13 13 C 1.51564 * 123.23388 * 151.77820 * 11 10 9 14 14 C 1.56339 * 101.80916 * 208.16616 * 13 11 10 15 15 C 1.56004 * 105.77069 * 25.43802 * 14 13 11 16 16 H 1.08998 * 110.64630 * 248.27684 * 15 14 13 17 17 N 1.46503 * 110.52531 * 125.58464 * 15 14 13 18 18 C 1.36936 * 119.99760 * 90.43762 * 17 15 14 19 19 H 1.07999 * 120.00323 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99791 * 179.97438 * 18 17 15 21 21 N 1.31622 * 119.99940 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00120 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47436 * 89.99436 * 22 20 18 24 24 H 1.48493 * 109.47219 * 209.99627 * 22 20 18 25 25 H 1.48501 * 109.46885 * 329.99616 * 22 20 18 26 26 C 1.49706 * 103.98381 * 6.96051 * 15 14 13 27 27 H 1.09000 * 108.54877 * 76.80934 * 26 15 14 28 28 C 1.49286 * 126.06832 * 180.02562 * 9 7 6 29 29 O 1.34361 * 126.28414 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46904 * 270.00200 * 1 2 3 31 31 H 1.09000 * 109.46808 * 29.99154 * 1 2 3 32 32 H 1.08995 * 109.47209 * 149.99487 * 1 2 3 33 33 H 1.09002 * 109.47152 * 329.68899 * 6 5 4 34 34 H 1.09001 * 109.46980 * 209.68999 * 6 5 4 35 35 H 1.08997 * 110.80162 * 272.62887 * 10 9 7 36 36 H 1.08999 * 110.80742 * 36.13098 * 10 9 7 37 37 H 1.08998 * 110.96167 * 90.03991 * 13 11 10 38 38 H 1.09000 * 110.99310 * 326.30734 * 13 11 10 39 39 H 1.08995 * 110.19296 * 266.36035 * 14 13 11 40 40 H 1.09008 * 110.19001 * 144.50980 * 14 13 11 41 41 H 0.97004 * 120.00107 * 270.43070 * 17 15 14 42 42 H 0.96999 * 119.99981 * 180.02562 * 21 20 18 43 43 H 1.09002 * 110.39521 * 292.37249 * 28 9 7 44 44 H 1.08992 * 110.39943 * 54.66649 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5090 0.6761 0.0057 5 6 3.5654 -0.6254 -0.0001 6 6 4.8177 -1.4638 -0.0002 7 6 5.2352 -1.7433 1.4206 8 8 4.5800 -1.3053 2.3424 9 7 6.3360 -2.4810 1.6668 10 6 7.2353 -3.0916 0.6387 11 6 8.5541 -3.1981 1.3821 12 1 9.0145 -2.2211 1.5293 13 6 9.5980 -4.2531 1.0749 14 6 10.3044 -4.4171 2.4600 15 6 9.2497 -3.9896 3.5271 16 1 9.5489 -3.0606 4.0125 17 7 9.0650 -5.0504 4.5205 18 6 9.8350 -5.0697 5.6527 19 1 10.5788 -4.3033 5.8131 20 6 9.6596 -6.0745 6.5942 21 7 10.4001 -6.0934 7.6822 22 14 8.3736 -7.4006 6.3165 23 1 8.9853 -8.5373 5.5822 24 1 7.8617 -7.8759 7.6269 25 1 7.2516 -6.8429 5.5195 26 6 7.9953 -3.7877 2.7353 27 1 7.5739 -4.7646 2.4982 28 6 6.8706 -2.8397 3.0137 29 8 2.3021 -1.0831 -0.0005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8901 -0.5137 32 1 -0.3633 -0.8899 -0.5139 33 1 5.6147 -0.9264 -0.5140 34 1 4.6244 -2.4055 -0.5141 35 1 6.8738 -4.0768 0.3443 36 1 7.3318 -2.4383 -0.2285 37 1 10.2992 -3.8994 0.3192 38 1 9.1297 -5.1867 0.7631 39 1 11.1792 -3.7695 2.5152 40 1 10.5947 -5.4566 2.6135 41 1 8.3971 -5.7389 4.3763 42 1 10.2778 -6.7958 8.3400 43 1 7.2410 -1.9508 3.5244 44 1 6.0998 -3.3266 3.6110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026258593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:01 Heat of formation + Delta-G solvation = 8.783628 kcal Electronic energy + Delta-G solvation = -26641.274746 eV Core-core repulsion = 22788.458180 eV Total energy + Delta-G solvation = -3852.816566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.32738 -41.77793 -40.03129 -37.29259 -36.94544 -35.14814 -34.68268 -33.07940 -32.32663 -30.65848 -29.95527 -28.25070 -27.08176 -24.79488 -24.50957 -23.79792 -23.41567 -21.52154 -20.62264 -20.54160 -19.55471 -18.74990 -18.30590 -17.76977 -17.63991 -16.82932 -16.56305 -16.21164 -15.87847 -15.69969 -15.39704 -15.04347 -14.97632 -14.48497 -14.33714 -14.06378 -13.76945 -13.59294 -13.51829 -13.44970 -13.41886 -13.21617 -13.03571 -12.99260 -12.62954 -12.31896 -12.27062 -12.14128 -12.06234 -11.84968 -11.58111 -11.38841 -11.25598 -11.04101 -10.93628 -10.56240 -9.84663 -9.30090 -8.02504 -5.35333 0.01711 1.09481 1.26137 1.35763 1.39654 1.40565 1.46642 1.77979 2.47583 2.74946 2.94631 3.29906 3.32029 3.38916 3.50747 3.77377 3.89618 3.91375 4.06339 4.21706 4.29021 4.31806 4.34901 4.44587 4.50203 4.51102 4.53152 4.57021 4.68457 4.69612 4.70521 4.77559 4.93221 4.95695 4.97875 5.01973 5.17822 5.27763 5.36192 5.55158 5.55860 5.78932 6.22328 6.33607 6.90271 7.08175 7.17155 7.85000 8.02964 9.19239 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019531 B = 0.002649 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.310937 B =10567.165958 C =11415.351658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.171 3.829 3 N -0.331 5.331 4 N -0.311 5.311 5 C 0.179 3.821 6 C -0.031 4.031 7 C 0.528 3.472 8 O -0.594 6.594 9 N -0.615 5.615 10 C 0.114 3.886 11 C -0.106 4.106 12 H 0.091 0.909 13 C -0.084 4.084 14 C -0.140 4.140 15 C 0.191 3.809 16 H 0.042 0.958 17 N -0.749 5.749 18 C -0.226 4.226 19 H 0.055 0.945 20 C -0.067 4.067 21 N -0.986 5.986 22 Si 0.955 3.045 23 H -0.275 1.275 24 H -0.301 1.301 25 H -0.254 1.254 26 C -0.130 4.130 27 H 0.079 0.921 28 C 0.135 3.865 29 O -0.229 6.229 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.176 0.824 34 H 0.173 0.827 35 H 0.102 0.898 36 H 0.126 0.874 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.365 0.635 42 H 0.256 0.744 43 H 0.055 0.945 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.441 6.290 -27.180 31.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.040 4.040 3 N -0.178 5.178 4 N -0.156 5.156 5 C -0.034 4.034 6 C -0.071 4.071 7 C 0.317 3.683 8 O -0.475 6.475 9 N -0.349 5.349 10 C -0.006 4.006 11 C -0.126 4.126 12 H 0.109 0.891 13 C -0.122 4.122 14 C -0.180 4.180 15 C 0.082 3.918 16 H 0.060 0.940 17 N -0.392 5.392 18 C -0.357 4.357 19 H 0.073 0.927 20 C -0.259 4.259 21 N -0.637 5.637 22 Si 0.782 3.218 23 H -0.201 1.201 24 H -0.228 1.228 25 H -0.179 1.179 26 C -0.150 4.150 27 H 0.097 0.903 28 C 0.013 3.987 29 O -0.108 6.108 30 H 0.130 0.870 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.193 0.807 34 H 0.190 0.810 35 H 0.121 0.879 36 H 0.144 0.856 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.198 0.802 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.343 7.891 -26.573 31.683 hybrid contribution -0.630 -1.904 1.405 2.449 sum -15.973 5.987 -25.168 30.404 Atomic orbital electron populations 1.20740 0.76422 1.07699 1.06698 1.29087 0.99521 0.78703 0.96646 1.74297 0.96327 1.27167 1.20007 1.74252 1.13126 1.10423 1.17820 1.27516 0.85757 0.91161 0.98935 1.20338 0.89362 1.02609 0.94793 1.20347 0.79383 0.77375 0.91203 1.90773 1.54932 1.53453 1.48299 1.49786 1.25720 1.50856 1.08535 1.22292 0.86865 1.00838 0.90571 1.22649 0.95337 1.00411 0.94164 0.89095 1.21789 0.96657 0.98011 0.95721 1.23576 0.98332 1.01200 0.94931 1.20194 0.92885 0.90324 0.88360 0.93997 1.42867 1.43743 1.31103 1.21439 1.19032 1.12349 1.08119 0.96182 0.92656 1.25510 1.01978 1.01809 0.96559 1.69889 1.44831 1.36678 1.12254 0.85409 0.79859 0.79713 0.76774 1.20060 1.22792 1.17879 1.21902 0.94855 0.99386 0.98845 0.90254 1.20787 0.95448 0.97987 0.84507 1.84767 1.17561 1.38739 1.69764 0.87039 0.85849 0.86294 0.80692 0.80978 0.87949 0.85566 0.88886 0.90033 0.92128 0.92763 0.80157 0.93479 0.92674 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 71.24 0.75 0.30 16 2 C 0.17 3.46 8.48 88.34 0.75 4.21 16 3 N -0.33 -9.04 12.22 -165.50 -2.02 -11.06 16 4 N -0.31 -8.84 12.22 -165.50 -2.02 -10.86 16 5 C 0.18 4.04 6.97 88.34 0.62 4.65 16 6 C -0.03 -0.41 5.38 29.10 0.16 -0.25 16 7 C 0.53 12.40 7.87 87.66 0.69 13.09 16 8 O -0.59 -21.24 16.40 -3.03 -0.05 -21.29 16 9 N -0.62 -12.56 3.42 -814.69 -2.79 -15.35 16 10 C 0.11 1.20 6.48 85.37 0.55 1.75 16 11 C -0.11 -1.73 3.15 -9.96 -0.03 -1.76 16 12 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 13 C -0.08 -1.37 6.59 31.29 0.21 -1.16 16 14 C -0.14 -3.89 6.74 32.80 0.22 -3.66 16 15 C 0.19 6.56 3.45 44.98 0.16 6.72 16 16 H 0.04 1.61 8.09 -2.39 -0.02 1.59 16 17 N -0.75 -33.41 4.90 -323.01 -1.58 -35.00 16 18 C -0.23 -12.67 10.44 84.03 0.88 -11.79 16 19 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 20 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 21 N -0.99 -63.49 13.97 21.65 0.30 -63.19 16 22 Si 0.95 45.35 27.74 68.60 1.90 47.26 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 25 H -0.25 -10.91 6.52 99.48 0.65 -10.26 16 26 C -0.13 -3.37 2.22 -11.19 -0.02 -3.39 16 27 H 0.08 2.01 7.72 -2.39 -0.02 1.99 16 28 C 0.13 3.77 6.83 84.78 0.58 4.35 16 29 O -0.23 -5.00 10.87 -3.62 -0.04 -5.04 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.18 1.09 7.91 -2.39 -0.02 1.07 16 34 H 0.17 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16 36 H 0.13 0.33 7.58 -2.39 -0.02 0.31 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.74 7.98 -2.38 -0.02 1.73 16 41 H 0.36 15.66 5.54 -92.70 -0.51 15.14 16 42 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -89.26 363.84 0.11 -89.16 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.45 Total: 15.82 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 5.96 Total: 9.56 kcal Atomic # 7 Polarization: -127.34 SS G_CDS: -8.12 Total: -135.46 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.09 Total: -26.33 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.26 kcal Total: -89.26 0.11 -89.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026258593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.942 kcal (2) G-P(sol) polarization free energy of solvation -89.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds