Wall clock time and date at job start Tue Mar 31 2020 12:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32092 * 119.84917 * 2 1 4 4 C 1.32613 * 120.00699 * 179.97438 * 3 2 1 5 5 O 1.35421 * 120.14866 * 180.02562 * 4 3 2 6 6 C 1.40225 * 119.70433 * 359.97438 * 4 3 2 7 7 C 1.47833 * 120.14370 * 179.97438 * 6 4 3 8 8 O 1.21555 * 120.00480 * 0.02562 * 7 6 4 9 9 N 1.34779 * 120.00117 * 179.97438 * 7 6 4 10 10 C 1.46496 * 120.00560 * 180.27502 * 9 7 6 11 11 C 1.52991 * 109.47371 * 186.19996 * 10 9 7 12 12 H 1.08998 * 109.87460 * 300.88189 * 11 10 9 13 13 C 1.54325 * 109.88471 * 179.86514 * 11 10 9 14 14 C 1.55154 * 102.94780 * 218.39136 * 13 11 10 15 15 C 1.54911 * 101.58187 * 35.49966 * 14 13 11 16 16 N 1.47027 * 109.88440 * 62.05831 * 11 10 9 17 17 C 1.36931 * 125.64834 * 298.33847 * 16 11 10 18 18 H 1.08000 * 119.99768 * 335.94102 * 17 16 11 19 19 C 1.38807 * 120.00072 * 155.93959 * 17 16 11 20 20 N 1.31618 * 120.00347 * 159.31361 * 19 17 16 21 21 Si 1.86806 * 120.00125 * 339.31121 * 19 17 16 22 22 H 1.48501 * 109.46923 * 84.83832 * 21 19 17 23 23 H 1.48503 * 109.47075 * 204.83623 * 21 19 17 24 24 H 1.48502 * 109.46858 * 324.83607 * 21 19 17 25 25 N 1.32994 * 119.70661 * 0.25882 * 6 4 3 26 26 C 1.31764 * 119.98445 * 359.46602 * 25 6 4 27 27 C 1.50705 * 119.84830 * 180.30185 * 26 25 6 28 28 H 1.09006 * 109.46658 * 90.00370 * 1 2 3 29 29 H 1.08994 * 109.46733 * 209.99987 * 1 2 3 30 30 H 1.09000 * 109.47112 * 330.00301 * 1 2 3 31 31 H 0.96702 * 114.00626 * 269.97499 * 5 4 3 32 32 H 0.97007 * 119.99715 * 0.02562 * 9 7 6 33 33 H 1.09009 * 109.46851 * 306.20427 * 10 9 7 34 34 H 1.09003 * 109.47117 * 66.19725 * 10 9 7 35 35 H 1.09005 * 110.72138 * 336.75911 * 13 11 10 36 36 H 1.09002 * 110.72107 * 100.02586 * 13 11 10 37 37 H 1.08999 * 111.00805 * 153.57172 * 14 13 11 38 38 H 1.09004 * 111.00282 * 277.42761 * 14 13 11 39 39 H 1.09003 * 110.36623 * 81.82667 * 15 14 13 40 40 H 1.08991 * 110.37278 * 204.04682 * 15 14 13 41 41 H 0.96998 * 120.00793 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.47189 * 270.25400 * 27 26 25 43 43 H 1.09004 * 109.47132 * 30.25910 * 27 26 25 44 44 H 1.09001 * 109.46697 * 150.25598 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1644 1.1457 0.0000 4 6 3.4906 1.1493 0.0005 5 8 4.1675 2.3222 0.0010 6 6 4.1888 -0.0667 0.0016 7 6 5.6671 -0.0740 0.0016 8 8 6.2801 0.9757 0.0011 9 7 6.3353 -1.2445 0.0032 10 6 7.8002 -1.2518 0.0093 11 6 8.3037 -2.6881 -0.1459 12 1 7.9247 -3.3038 0.6698 13 6 9.8468 -2.7065 -0.1441 14 6 10.1829 -3.7870 -1.2055 15 6 9.0523 -3.5676 -2.2415 16 7 7.8622 -3.2361 -1.4369 17 6 6.5613 -3.4101 -1.8270 18 1 5.7844 -3.5161 -1.0843 19 6 6.2410 -3.4501 -3.1771 20 7 5.1150 -4.0068 -3.5701 21 14 7.4081 -2.7138 -4.4362 22 1 8.4449 -3.7146 -4.7947 23 1 6.6470 -2.3319 -5.6528 24 1 8.0601 -1.5095 -3.8618 25 7 3.5152 -1.2134 -0.0031 26 6 2.1976 -1.2032 0.0019 27 6 1.4374 -2.5045 0.0034 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 4.3648 2.6630 -0.8822 32 1 5.8461 -2.0822 0.0039 33 1 8.1700 -0.6457 -0.8179 34 1 8.1617 -0.8398 0.9515 35 1 10.2444 -1.7363 -0.4421 36 1 10.2279 -2.9962 0.8352 37 1 11.1612 -3.6064 -1.6509 38 1 10.1299 -4.7872 -0.7753 39 1 9.3025 -2.7412 -2.9068 40 1 8.8821 -4.4781 -2.8160 41 1 4.8910 -4.0345 -4.5135 42 1 1.2542 -2.8194 -1.0238 43 1 2.0225 -3.2665 0.5183 44 1 0.4856 -2.3686 0.5170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027965141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:20 Heat of formation + Delta-G solvation = -27.350630 kcal Electronic energy + Delta-G solvation = -27988.591106 eV Core-core repulsion = 24134.207640 eV Total energy + Delta-G solvation = -3854.383465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.62829 -40.60470 -39.45228 -38.70629 -35.87862 -35.39786 -34.61535 -34.29551 -31.78621 -31.13757 -29.79915 -28.60379 -26.65392 -25.73671 -24.62266 -23.92359 -22.60122 -21.57601 -21.13318 -19.92617 -19.41047 -19.15205 -18.25703 -17.40852 -17.20336 -16.94979 -16.76562 -15.98625 -15.74677 -15.45871 -15.19752 -14.96082 -14.83625 -14.34126 -14.24224 -14.11715 -13.93703 -13.88484 -13.42980 -13.34217 -13.03207 -12.92902 -12.86223 -12.79297 -12.73396 -12.48606 -12.35190 -12.08787 -11.97990 -11.77332 -11.62314 -11.36860 -11.29996 -10.76784 -10.20792 -10.11777 -9.82859 -8.98973 -8.14892 -5.41782 -0.83276 -0.19750 1.23712 1.33582 1.39901 1.58134 1.94958 2.31612 2.40170 2.53439 2.83975 3.10634 3.12739 3.29284 3.50028 3.77760 3.85365 3.95440 4.00695 4.02276 4.16122 4.29990 4.43512 4.55981 4.61965 4.70091 4.72091 4.78030 4.79046 4.88397 4.95738 5.01744 5.02644 5.10970 5.14555 5.27221 5.43214 5.46736 5.49158 5.75184 5.93997 6.14127 6.35346 6.43000 6.62235 6.79123 7.12075 7.57544 8.15999 9.03762 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.004723 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.220016 B = 5927.008078 C = 6798.734698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.133 3.867 3 N -0.475 5.475 4 C 0.306 3.694 5 O -0.463 6.463 6 C -0.012 4.012 7 C 0.562 3.438 8 O -0.560 6.560 9 N -0.683 5.683 10 C 0.114 3.886 11 C 0.140 3.860 12 H 0.059 0.941 13 C -0.113 4.113 14 C -0.116 4.116 15 C 0.101 3.899 16 N -0.619 5.619 17 C -0.207 4.207 18 H 0.074 0.926 19 C -0.023 4.023 20 N -0.942 5.942 21 Si 0.925 3.075 22 H -0.272 1.272 23 H -0.318 1.318 24 H -0.285 1.285 25 N -0.408 5.408 26 C 0.064 3.936 27 C -0.099 4.099 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.418 0.582 32 H 0.414 0.586 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.010 0.990 40 H 0.038 0.962 41 H 0.257 0.743 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 3.610 9.042 10.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.011 4.011 3 N -0.200 5.200 4 C 0.125 3.875 5 O -0.271 6.271 6 C -0.153 4.153 7 C 0.346 3.654 8 O -0.440 6.440 9 N -0.334 5.334 10 C -0.011 4.011 11 C 0.034 3.966 12 H 0.077 0.923 13 C -0.151 4.151 14 C -0.154 4.154 15 C -0.024 4.024 16 N -0.344 5.344 17 C -0.335 4.335 18 H 0.091 0.909 19 C -0.218 4.218 20 N -0.589 5.589 21 Si 0.757 3.243 22 H -0.198 1.198 23 H -0.247 1.247 24 H -0.212 1.212 25 N -0.127 5.127 26 C -0.081 4.081 27 C -0.156 4.156 28 H 0.124 0.876 29 H 0.138 0.862 30 H 0.109 0.891 31 H 0.280 0.720 32 H 0.254 0.746 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.027 0.973 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.837 4.315 9.480 11.100 hybrid contribution 0.330 0.397 -1.912 1.980 sum -3.507 4.713 7.568 9.580 Atomic orbital electron populations 1.21119 0.83214 1.06254 1.05567 1.23081 1.00630 0.86595 0.90758 1.68046 1.07349 1.31245 1.13409 1.19970 0.87516 0.86207 0.93776 1.84647 1.73041 1.34293 1.35115 1.22302 0.95791 0.90453 1.06721 1.17772 0.85643 0.84475 0.77483 1.90717 1.68670 1.32050 1.52547 1.46011 1.08216 1.08634 1.70569 1.22052 0.78865 0.99525 1.00678 1.21585 0.95721 0.90541 0.88768 0.92330 1.22561 0.91737 0.99753 1.01036 1.22682 0.97311 0.99819 0.95631 1.22043 0.88413 0.96815 0.95110 1.45095 1.01327 1.72389 1.15624 1.18423 0.83213 1.40776 0.91135 0.90871 1.25499 0.97013 1.00968 0.98358 1.69899 1.26490 1.47112 1.15414 0.86242 0.79065 0.79824 0.79209 1.19803 1.24699 1.21191 1.68252 1.10187 1.27763 1.06462 1.22899 0.89315 0.99083 0.96825 1.20947 1.00074 0.89938 1.04655 0.87593 0.86179 0.89109 0.72047 0.74635 0.93974 0.90190 0.90576 0.87424 0.88747 0.90020 0.97259 0.94325 0.93407 0.89366 0.90659 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.78 71.24 0.70 -0.76 16 2 C 0.13 3.45 6.79 42.64 0.29 3.74 16 3 N -0.48 -14.94 10.44 -295.25 -3.08 -18.02 16 4 C 0.31 11.00 7.78 85.06 0.66 11.66 16 5 O -0.46 -15.73 11.64 -66.27 -0.77 -16.50 16 6 C -0.01 -0.46 6.77 41.99 0.28 -0.18 16 7 C 0.56 24.12 7.80 86.78 0.68 24.80 16 8 O -0.56 -25.33 15.15 17.01 0.26 -25.08 16 9 N -0.68 -28.49 4.79 -465.99 -2.23 -30.72 16 10 C 0.11 4.27 5.18 86.38 0.45 4.72 16 11 C 0.14 4.95 3.34 45.34 0.15 5.10 16 12 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 13 C -0.11 -2.96 6.48 31.78 0.21 -2.76 16 14 C -0.12 -3.27 7.08 31.99 0.23 -3.04 16 15 C 0.10 4.09 4.74 86.85 0.41 4.50 16 16 N -0.62 -27.71 2.87 -668.26 -1.91 -29.63 16 17 C -0.21 -11.01 8.88 84.03 0.75 -10.26 16 18 H 0.07 4.15 6.55 -2.91 -0.02 4.13 16 19 C -0.02 -1.32 5.44 84.86 0.46 -0.86 16 20 N -0.94 -57.15 13.97 21.65 0.30 -56.85 16 21 Si 0.92 47.81 24.34 68.60 1.67 49.48 16 22 H -0.27 -13.23 6.70 99.48 0.67 -12.57 16 23 H -0.32 -16.93 7.11 99.48 0.71 -16.22 16 24 H -0.29 -14.93 6.76 99.48 0.67 -14.26 16 25 N -0.41 -15.39 9.62 -172.24 -1.66 -17.05 16 26 C 0.06 1.88 6.78 42.69 0.29 2.17 16 27 C -0.10 -2.08 9.77 71.24 0.70 -1.38 16 28 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.12 0.92 5.93 -2.39 -0.01 0.91 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.42 10.99 9.06 -74.06 -0.67 10.32 16 32 H 0.41 18.07 5.33 -92.70 -0.49 17.58 16 33 H 0.04 1.77 8.12 -2.38 -0.02 1.75 16 34 H 0.08 2.59 8.14 -2.39 -0.02 2.58 16 35 H 0.08 1.92 7.85 -2.38 -0.02 1.90 16 36 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.01 0.42 5.45 -2.39 -0.01 0.41 16 40 H 0.04 1.70 7.19 -2.39 -0.02 1.68 16 41 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 43 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.13 1.42 5.93 -2.39 -0.01 1.40 16 Total: -1.00 -77.25 352.98 -1.36 -78.61 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -0.18 Total: 28.31 kcal Atomic # 6 Polarization: 31.20 SS G_CDS: 6.25 Total: 37.45 kcal Atomic # 7 Polarization: -143.68 SS G_CDS: -8.58 Total: -152.27 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.51 Total: -41.58 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.67 Total: 49.48 kcal Total: -77.25 -1.36 -78.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027965141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.261 kcal (2) G-P(sol) polarization free energy of solvation -77.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds