Wall clock time and date at job start Tue Mar 31 2020 12:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.35845 * 126.45601 * 2 1 4 4 H 0.96998 * 124.91794 * 359.97438 * 3 2 1 5 5 N 1.28461 * 110.16558 * 179.97438 * 3 2 1 6 6 C 1.31942 * 110.21047 * 359.73233 * 5 3 2 7 7 C 1.47519 * 126.45907 * 180.28354 * 6 5 3 8 8 O 1.21592 * 119.99573 * 186.53876 * 7 6 5 9 9 N 1.34769 * 120.00292 * 6.53035 * 7 6 5 10 10 C 1.46883 * 120.46901 * 186.90617 * 9 7 6 11 11 C 1.52864 * 109.01586 * 235.49093 * 10 9 7 12 12 C 1.52674 * 109.17636 * 307.81231 * 11 10 9 13 13 C 1.53478 * 113.62114 * 188.99362 * 12 11 10 14 14 N 1.47666 * 85.98518 * 137.71332 * 13 12 11 15 15 C 1.36941 * 134.45651 * 155.70304 * 14 13 12 16 16 H 1.07994 * 120.00195 * 179.97438 * 15 14 13 17 17 C 1.38814 * 120.00060 * 359.96819 * 15 14 13 18 18 N 1.31622 * 119.99900 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00077 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47274 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46959 * 120.00080 * 19 17 15 22 22 H 1.48496 * 109.47033 * 239.99714 * 19 17 15 23 23 C 1.47658 * 91.08760 * 335.68018 * 14 13 12 24 24 C 1.52675 * 113.18072 * 57.46067 * 12 11 10 25 25 C 1.46883 * 120.46389 * 7.17984 * 9 7 6 26 26 C 1.35780 * 126.46317 * 179.97438 * 2 1 3 27 27 O 1.36081 * 127.26599 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.46965 * 270.02461 * 1 2 3 29 29 H 1.08998 * 109.47184 * 30.02413 * 1 2 3 30 30 H 1.09008 * 109.46807 * 150.02297 * 1 2 3 31 31 H 1.09004 * 109.58296 * 355.31146 * 10 9 7 32 32 H 1.08992 * 109.59074 * 115.74724 * 10 9 7 33 33 H 1.08999 * 109.60568 * 187.83908 * 11 10 9 34 34 H 1.08997 * 109.44799 * 67.69463 * 11 10 9 35 35 H 1.09010 * 113.78563 * 251.97621 * 13 12 11 36 36 H 1.08996 * 113.79125 * 23.43915 * 13 12 11 37 37 H 0.97001 * 119.99981 * 180.02562 * 18 17 15 38 38 H 1.09009 * 113.78807 * 270.05449 * 23 14 13 39 39 H 1.09000 * 113.79415 * 138.58452 * 23 14 13 40 40 H 1.09002 * 109.52856 * 182.51528 * 24 12 11 41 41 H 1.09004 * 109.59056 * 62.33968 * 24 12 11 42 42 H 1.08994 * 109.59089 * 244.25029 * 25 9 7 43 43 H 1.09000 * 109.59416 * 4.69161 * 25 9 7 44 44 H 0.96693 * 114.00311 * 90.02513 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0926 0.0000 4 1 2.0044 2.0118 -0.0004 5 7 3.5472 0.7323 0.0005 6 6 3.6374 -0.5840 0.0067 7 6 4.8810 -1.3775 0.0152 8 8 4.8313 -2.5869 -0.0996 9 7 6.0723 -0.7618 0.1499 10 6 7.3226 -1.5198 0.0089 11 6 8.1655 -1.3291 1.2698 12 6 8.3125 0.1637 1.5538 13 6 9.3184 0.4815 2.6686 14 7 9.7795 1.5806 1.7969 15 6 10.4166 2.7734 2.0131 16 1 10.6504 3.4195 1.1800 17 6 10.7618 3.1520 3.3032 18 7 10.4763 2.3648 4.3187 19 14 11.6301 4.7793 3.5983 20 1 11.8346 5.4735 2.3016 21 1 10.8000 5.6288 4.4896 22 1 12.9465 4.5290 4.2382 23 6 9.2789 0.8779 0.5986 24 6 6.9737 0.8794 1.7156 25 6 6.1386 0.6753 0.4459 26 6 2.3139 -1.0920 0.0005 27 8 1.9327 -2.3983 0.0016 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8903 -0.5135 31 1 7.0956 -2.5780 -0.1205 32 1 7.8760 -1.1541 -0.8559 33 1 9.1509 -1.7706 1.1211 34 1 7.6725 -1.8136 2.1126 35 1 8.8551 0.8202 3.5954 36 1 10.0636 -0.2987 2.8240 37 1 10.7171 2.6296 5.2203 38 1 10.0124 0.2155 0.1388 39 1 8.7842 1.5315 -0.1199 40 1 7.1463 1.9444 1.8710 41 1 6.4404 0.4679 2.5726 42 1 6.6069 1.1989 -0.3875 43 1 5.1321 1.0627 0.6043 44 1 1.8225 -2.7766 -0.8814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035687635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:04 Heat of formation + Delta-G solvation = 67.149028 kcal Electronic energy + Delta-G solvation = -27612.753483 eV Core-core repulsion = 23762.467830 eV Total energy + Delta-G solvation = -3850.285653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.96360 -40.02541 -38.48351 -37.37746 -35.57112 -33.19359 -32.36986 -31.46912 -30.64239 -30.17804 -27.24687 -26.87891 -25.07818 -24.58246 -23.05403 -22.66505 -21.55750 -20.98704 -19.49274 -18.48925 -17.53997 -17.28255 -16.65087 -16.36492 -16.13289 -15.71424 -14.87960 -14.76494 -14.53795 -14.43942 -14.07667 -13.73639 -13.59520 -13.55472 -13.41928 -12.96651 -12.91111 -12.72024 -12.13180 -12.01292 -11.68713 -11.50597 -11.02177 -10.93385 -10.81756 -10.72916 -10.62885 -10.26645 -10.08601 -9.72818 -9.64574 -9.50336 -9.42564 -9.26306 -8.95586 -8.73323 -8.29253 -6.79477 -5.71088 -3.02483 1.33117 1.64820 2.43683 3.10846 3.36374 3.40640 3.45980 3.48557 3.98184 4.30249 4.41865 4.50080 4.64709 5.02270 5.07478 5.14577 5.26219 5.33106 5.37792 5.42456 5.46090 5.51213 5.60852 5.71428 5.78622 5.89555 6.02877 6.08322 6.18158 6.29524 6.37617 6.44199 6.56024 6.67568 6.72493 6.80168 6.91446 6.96056 7.31625 7.45227 7.47013 7.50496 7.65241 7.66576 8.04743 8.29044 9.10777 9.76822 10.68539 11.45891 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.003124 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.694939 B = 8961.789832 C = 9850.306262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.010 4.010 3 N -0.378 5.378 4 H 0.449 0.551 5 N -0.238 5.238 6 C -0.020 4.020 7 C 0.598 3.402 8 O -0.535 6.535 9 N -0.590 5.590 10 C 0.116 3.884 11 C -0.118 4.118 12 C -0.109 4.109 13 C 0.173 3.827 14 N -0.610 5.610 15 C -0.219 4.219 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.920 5.920 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C 0.127 3.873 24 C -0.095 4.095 25 C 0.087 3.913 26 C 0.045 3.955 27 O -0.452 6.452 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.024 0.976 37 H 0.252 0.748 38 H 0.031 0.969 39 H 0.040 0.960 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.121 0.879 44 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.742 -4.993 -11.103 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.136 4.136 3 N -0.094 5.094 4 H 0.295 0.705 5 N -0.074 5.074 6 C -0.181 4.181 7 C 0.384 3.616 8 O -0.411 6.411 9 N -0.322 5.322 10 C -0.006 4.006 11 C -0.157 4.157 12 C -0.110 4.110 13 C 0.048 3.952 14 N -0.335 5.335 15 C -0.347 4.347 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.568 5.568 19 Si 0.739 3.261 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.219 1.219 23 C 0.001 3.999 24 C -0.134 4.134 25 C -0.036 4.036 26 C -0.011 4.011 27 O -0.257 6.257 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.138 0.862 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -19.928 -4.442 -10.376 22.902 hybrid contribution 0.213 0.723 -0.171 0.773 sum -19.715 -3.719 -10.547 22.666 Atomic orbital electron populations 1.20292 0.86041 1.03787 1.03610 1.21566 0.95375 0.87468 1.09199 1.43306 1.03125 1.09317 1.53687 0.70524 1.73588 1.00766 1.14007 1.19070 1.22457 0.95437 0.89893 1.10295 1.16877 0.81493 0.86127 0.77122 1.90778 1.86211 1.12857 1.51209 1.47946 1.05064 1.10684 1.68551 1.21562 0.83583 0.97063 0.98413 1.21738 0.99606 0.97174 0.97137 1.22389 0.95366 0.92535 1.00742 1.22231 0.90699 0.88177 0.94129 1.45980 1.69123 1.16724 1.01720 1.19060 1.30144 0.92807 0.92645 0.90419 1.24759 1.01715 0.98587 0.95520 1.69837 1.51953 1.36778 0.98239 0.86094 0.79055 0.83228 0.77688 1.20558 1.21810 1.21872 1.22585 0.92918 0.93063 0.91345 1.21482 0.93845 1.01911 0.96114 1.22570 1.03755 0.79223 0.98037 1.17744 0.88997 0.85070 1.09310 1.84904 1.88733 1.19210 1.32831 0.90101 0.90982 0.89570 0.89411 0.91378 0.90721 0.91824 0.91073 0.95778 0.93825 0.95162 0.94195 0.89593 0.92409 0.91543 0.86238 0.75961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.44 36.01 0.38 0.02 16 2 C -0.01 -0.08 7.27 -81.70 -0.59 -0.68 16 3 N -0.38 -3.11 6.87 33.71 0.23 -2.88 16 4 H 0.45 1.95 8.96 -190.45 -1.71 0.24 16 5 N -0.24 -2.83 8.67 33.45 0.29 -2.54 16 6 C -0.02 -0.27 6.83 -82.69 -0.57 -0.84 16 7 C 0.60 9.70 7.67 -12.48 -0.10 9.61 16 8 O -0.54 -9.82 15.95 3.56 0.06 -9.76 16 9 N -0.59 -9.13 2.95 -174.19 -0.51 -9.64 16 10 C 0.12 1.72 6.29 -3.90 -0.02 1.69 16 11 C -0.12 -1.89 5.24 -26.97 -0.14 -2.03 16 12 C -0.11 -2.05 0.77 -154.43 -0.12 -2.17 16 13 C 0.17 4.12 6.64 -3.16 -0.02 4.10 16 14 N -0.61 -15.62 3.53 -179.81 -0.64 -16.25 16 15 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.92 -27.54 11.39 55.49 0.63 -26.91 16 19 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 C 0.13 2.59 7.72 -3.15 -0.02 2.57 16 24 C -0.10 -1.69 5.21 -26.72 -0.14 -1.83 16 25 C 0.09 1.31 6.01 -3.66 -0.02 1.29 16 26 C 0.04 0.53 7.28 -39.12 -0.28 0.25 16 27 O -0.45 -5.19 13.21 -21.72 -0.29 -5.48 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.09 1.30 6.98 -51.93 -0.36 0.94 16 32 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.88 7.12 -51.92 -0.37 1.51 16 36 H 0.02 0.60 8.09 -51.93 -0.42 0.18 16 37 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.03 0.61 8.07 -51.92 -0.42 0.19 16 39 H 0.04 0.78 7.41 -51.93 -0.38 0.40 16 40 H 0.09 1.70 8.01 -51.93 -0.42 1.29 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.99 7.49 -51.93 -0.39 0.60 16 43 H 0.12 1.71 4.06 -81.69 -0.33 1.38 16 44 H 0.39 2.74 9.06 45.56 0.41 3.15 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -36.07 355.34 -8.69 -44.76 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.89 Total: 0.79 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -1.91 Total: 5.28 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.00 Total: -58.23 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.23 Total: -15.25 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.07 -8.69 -44.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035687635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.913 kcal (2) G-P(sol) polarization free energy of solvation -36.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds