Wall clock time and date at job start Tue Mar 31 2020 14:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30271 * 126.28782 * 2 1 4 4 N 1.28668 * 109.38766 * 179.73358 * 3 2 1 5 5 C 1.30278 * 109.37274 * 0.43958 * 4 3 2 6 6 C 1.50698 * 126.27769 * 179.83060 * 5 4 3 7 7 C 1.50704 * 109.47277 * 89.69057 * 6 5 4 8 8 O 1.21273 * 119.99999 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99991 * 179.97438 * 7 6 5 10 10 C 1.46888 * 120.46935 * 180.02562 * 9 7 6 11 11 C 1.53340 * 108.76168 * 124.43443 * 10 9 7 12 12 C 1.52671 * 109.11197 * 52.41268 * 11 10 9 13 13 C 1.53482 * 113.61895 * 170.87425 * 12 11 10 14 14 N 1.47674 * 85.98579 * 269.03741 * 13 12 11 15 15 C 1.36933 * 134.45375 * 155.66620 * 14 13 12 16 16 H 1.08003 * 120.00100 * 180.02562 * 15 14 13 17 17 C 1.38814 * 120.00524 * 0.02562 * 15 14 13 18 18 N 1.31624 * 119.99485 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00514 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46787 * 60.00033 * 19 17 15 21 21 H 1.48497 * 109.47165 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46922 * 300.00517 * 19 17 15 23 23 C 1.47660 * 91.08784 * 335.67895 * 14 13 12 24 24 C 1.52670 * 113.18776 * 302.41332 * 12 11 10 25 25 C 1.46888 * 120.46961 * 359.97438 * 9 7 6 26 26 O 1.34355 * 107.44132 * 359.57020 * 5 4 3 27 27 H 1.08997 * 109.47474 * 270.00428 * 1 2 3 28 28 H 1.09008 * 109.47056 * 30.00134 * 1 2 3 29 29 H 1.09004 * 109.47578 * 150.00005 * 1 2 3 30 30 H 1.09004 * 109.47278 * 329.68997 * 6 5 4 31 31 H 1.09001 * 109.47310 * 209.69382 * 6 5 4 32 32 H 1.09001 * 109.58768 * 4.64717 * 10 9 7 33 33 H 1.08999 * 109.58832 * 244.21412 * 10 9 7 34 34 H 1.09000 * 109.52453 * 292.52388 * 11 10 9 35 35 H 1.09000 * 109.53078 * 172.31039 * 11 10 9 36 36 H 1.09001 * 113.78675 * 23.29892 * 13 12 11 37 37 H 1.08990 * 113.78921 * 154.76937 * 13 12 11 38 38 H 0.97003 * 119.99428 * 179.97438 * 18 17 15 39 39 H 1.08997 * 113.79624 * 270.05317 * 23 14 13 40 40 H 1.09004 * 113.79376 * 138.58282 * 23 14 13 41 41 H 1.08997 * 109.52828 * 177.47413 * 24 12 11 42 42 H 1.08997 * 109.53039 * 297.69675 * 24 12 11 43 43 H 1.08994 * 109.59041 * 355.34266 * 25 9 7 44 44 H 1.08996 * 109.58680 * 115.78105 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0056 5 6 3.5653 -0.6255 0.0000 6 6 4.8175 -1.4639 0.0001 7 6 5.2349 -1.7434 1.4209 8 8 4.5798 -1.3053 2.3427 9 7 6.3357 -2.4810 1.6672 10 6 6.7516 -2.7602 3.0480 11 6 6.8659 -4.2783 3.2313 12 6 7.7585 -4.8487 2.1318 13 6 8.1251 -6.3244 2.3411 14 7 9.3085 -5.8200 3.0662 15 6 10.1310 -6.3327 4.0335 16 1 10.9541 -5.7436 4.4104 17 6 9.9071 -7.6096 4.5299 18 7 8.9043 -8.3277 4.0702 19 14 11.0286 -8.3087 5.8500 20 1 10.9761 -7.4413 7.0543 21 1 10.5800 -9.6787 6.2060 22 1 12.4218 -8.3617 5.3386 23 6 9.2493 -4.5412 2.3303 24 6 7.2530 -4.5375 0.7253 25 6 7.1358 -3.0181 0.5586 26 8 2.3021 -1.0832 0.0000 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 5.6146 -0.9266 -0.5138 31 1 4.6243 -2.4056 -0.5138 32 1 6.0094 -2.3633 3.7406 33 1 7.7187 -2.2952 3.2394 34 1 5.8754 -4.7286 3.1669 35 1 7.3036 -4.4958 4.2056 36 1 7.4212 -6.8670 2.9722 37 1 8.3666 -6.8525 1.4188 38 1 8.7481 -9.2201 4.4168 39 1 9.8249 -4.5394 1.4047 40 1 9.4389 -3.6665 2.9526 41 1 7.9548 -4.9317 -0.0096 42 1 6.2751 -4.9963 0.5797 43 1 6.6466 -2.7913 -0.3886 44 1 8.1297 -2.5711 0.5753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035698530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:22 Heat of formation + Delta-G solvation = 33.154767 kcal Electronic energy + Delta-G solvation = -27020.972279 eV Core-core repulsion = 23169.212524 eV Total energy + Delta-G solvation = -3851.759754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.28183 -41.62332 -40.17948 -37.24556 -37.14486 -34.75439 -34.38721 -32.75652 -32.03921 -31.28676 -28.78634 -28.14111 -26.70393 -25.17664 -24.61713 -23.81414 -23.47825 -22.83418 -20.83132 -19.21450 -18.68402 -18.49334 -18.21702 -17.78514 -17.03695 -16.87397 -16.58539 -16.09301 -15.81285 -15.65509 -15.40221 -15.04511 -14.81444 -14.58545 -14.02992 -13.98433 -13.75436 -13.63938 -13.51918 -13.48068 -13.29750 -13.08808 -12.95335 -12.91167 -12.78948 -12.60802 -12.23937 -12.11857 -12.01285 -11.64103 -11.53297 -11.33378 -11.06290 -10.91910 -10.78823 -10.48177 -9.65873 -8.85229 -7.88184 -5.19414 0.07166 1.16553 1.30485 1.44174 1.45920 1.46744 1.52732 1.98958 2.48634 2.79011 3.32434 3.35321 3.41203 3.45583 3.64294 3.82240 3.98522 3.99980 4.10126 4.19538 4.31681 4.35679 4.40320 4.47139 4.53206 4.56144 4.67831 4.73074 4.73825 4.79014 4.83558 4.92437 4.97372 5.05025 5.08230 5.16984 5.25400 5.31824 5.38956 5.50266 5.62951 5.79931 5.99758 6.33711 6.96044 7.00272 7.21444 7.65113 8.62227 9.28356 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034844 B = 0.002414 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.390993 B =11594.387068 C =11717.861519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.170 3.830 3 N -0.331 5.331 4 N -0.310 5.310 5 C 0.181 3.819 6 C -0.041 4.041 7 C 0.517 3.483 8 O -0.590 6.590 9 N -0.595 5.595 10 C 0.125 3.875 11 C -0.089 4.089 12 C -0.082 4.082 13 C 0.167 3.833 14 N -0.642 5.642 15 C -0.228 4.228 16 H 0.080 0.920 17 C -0.070 4.070 18 N -0.954 5.954 19 Si 0.973 3.027 20 H -0.279 1.279 21 H -0.296 1.296 22 H -0.278 1.278 23 C 0.129 3.871 24 C -0.115 4.115 25 C 0.104 3.896 26 O -0.229 6.229 27 H 0.112 0.888 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.177 0.823 31 H 0.170 0.830 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.030 0.970 37 H 0.019 0.981 38 H 0.246 0.754 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.130 0.870 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.192 13.945 -14.943 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.041 4.041 3 N -0.177 5.177 4 N -0.156 5.156 5 C -0.031 4.031 6 C -0.081 4.081 7 C 0.305 3.695 8 O -0.471 6.471 9 N -0.327 5.327 10 C 0.002 3.998 11 C -0.127 4.127 12 C -0.083 4.083 13 C 0.042 3.958 14 N -0.369 5.369 15 C -0.357 4.357 16 H 0.098 0.902 17 C -0.262 4.262 18 N -0.603 5.603 19 Si 0.801 3.199 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.204 1.204 23 C 0.004 3.996 24 C -0.153 4.153 25 C -0.017 4.017 26 O -0.109 6.109 27 H 0.130 0.870 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.194 0.806 31 H 0.188 0.812 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.148 0.852 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.016 15.202 -14.241 24.562 hybrid contribution 0.516 -2.222 1.344 2.648 sum -12.500 12.980 -12.897 22.160 Atomic orbital electron populations 1.20730 0.76518 1.07621 1.06699 1.29063 0.99502 0.78727 0.96796 1.74290 0.96352 1.27125 1.19977 1.74254 1.13052 1.10337 1.17933 1.27515 0.85698 0.91150 0.98781 1.20459 0.89483 1.02465 0.95662 1.20579 0.80063 0.77794 0.91019 1.90738 1.54856 1.53572 1.47941 1.48092 1.25853 1.50592 1.08180 1.21457 1.00551 0.94825 0.82951 1.21344 0.98545 0.94615 0.98203 1.22103 0.94457 0.95874 0.95889 1.22186 0.87862 0.93093 0.92652 1.46357 1.33484 1.15648 1.41384 1.19347 1.07182 0.97896 1.11277 0.90243 1.25554 1.00471 0.97410 1.02805 1.70000 1.32525 1.10921 1.46890 0.85234 0.78425 0.76970 0.79230 1.20496 1.22247 1.20387 1.22805 0.93611 0.88584 0.94563 1.21825 1.02523 0.96261 0.94723 1.22181 0.97228 0.92995 0.89277 1.84777 1.17612 1.38750 1.69730 0.86989 0.85872 0.86443 0.80612 0.81242 0.90795 0.90343 0.92650 0.93025 0.95110 0.96361 0.94505 0.92853 0.93394 0.88819 0.90817 0.85200 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 71.23 0.75 0.28 16 2 C 0.17 3.48 8.48 88.34 0.75 4.23 16 3 N -0.33 -9.00 12.22 -165.50 -2.02 -11.02 16 4 N -0.31 -8.78 12.22 -165.51 -2.02 -10.81 16 5 C 0.18 4.14 6.97 88.34 0.62 4.76 16 6 C -0.04 -0.57 4.66 29.10 0.14 -0.43 16 7 C 0.52 12.00 7.69 87.66 0.67 12.67 16 8 O -0.59 -20.11 15.42 -3.01 -0.05 -20.16 16 9 N -0.60 -12.54 2.94 -818.63 -2.41 -14.95 16 10 C 0.12 3.38 6.30 86.42 0.54 3.93 16 11 C -0.09 -2.89 5.21 30.60 0.16 -2.73 16 12 C -0.08 -2.61 0.77 -52.03 -0.04 -2.65 16 13 C 0.17 7.53 6.64 86.31 0.57 8.10 16 14 N -0.64 -31.67 3.53 -722.68 -2.55 -34.22 16 15 C -0.23 -12.68 10.70 84.03 0.90 -11.78 16 16 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 17 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 18 N -0.95 -57.66 11.39 21.65 0.25 -57.41 16 19 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 C 0.13 4.60 7.72 86.33 0.67 5.26 16 24 C -0.11 -2.32 5.26 30.58 0.16 -2.16 16 25 C 0.10 1.42 6.22 86.41 0.54 1.96 16 26 O -0.23 -5.13 10.87 -3.66 -0.04 -5.17 16 27 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.18 1.21 7.90 -2.38 -0.02 1.19 16 31 H 0.17 0.98 7.72 -2.39 -0.02 0.96 16 32 H 0.07 2.26 6.98 -2.39 -0.02 2.24 16 33 H 0.08 2.02 7.49 -2.39 -0.02 2.00 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 2.05 8.01 -2.39 -0.02 2.03 16 36 H 0.03 1.62 7.12 -2.39 -0.02 1.60 16 37 H 0.02 0.84 8.09 -2.39 -0.02 0.83 16 38 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 40 H 0.05 1.65 7.41 -2.38 -0.02 1.63 16 41 H 0.09 1.70 8.12 -2.39 -0.02 1.68 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.13 0.58 5.89 -2.39 -0.01 0.57 16 44 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 Total: -1.00 -85.90 359.84 1.08 -84.82 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 1.01 Total: 2.97 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 6.89 Total: 17.92 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -8.76 Total: -128.41 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.09 Total: -25.33 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -85.90 1.08 -84.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035698530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.973 kcal (2) G-P(sol) polarization free energy of solvation -85.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds