Wall clock time and date at job start Tue Mar 31 2020 13:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33221 * 126.01859 * 2 1 4 4 C 1.31541 * 109.76111 * 180.02562 * 3 2 1 5 5 O 1.35201 * 125.49306 * 179.97438 * 4 3 2 6 6 N 1.34950 * 109.01297 * 359.72182 * 4 3 2 7 7 H 0.97004 * 126.54273 * 180.27377 * 6 4 3 8 8 C 1.36727 * 126.01677 * 180.02562 * 2 1 3 9 9 C 1.46377 * 126.82440 * 359.97438 * 8 2 1 10 10 O 1.21740 * 120.00074 * 325.15113 * 9 8 2 11 11 N 1.34779 * 119.99871 * 145.15990 * 9 8 2 12 12 C 1.46593 * 119.67885 * 174.59028 * 11 9 8 13 13 C 1.53961 * 110.56864 * 132.19818 * 12 11 9 14 14 C 1.50829 * 108.18034 * 50.38483 * 13 12 11 15 15 H 1.08999 * 107.33299 * 54.33820 * 14 13 12 16 16 C 1.55059 * 108.30369 * 296.72733 * 14 13 12 17 17 H 1.08998 * 111.31168 * 307.57805 * 16 14 13 18 18 C 1.53743 * 100.33703 * 189.69287 * 16 14 13 19 19 C 1.55288 * 101.84399 * 38.91998 * 18 16 14 20 20 N 1.45460 * 118.32255 * 178.45591 * 14 13 12 21 21 C 1.36942 * 126.40652 * 330.64197 * 20 14 13 22 22 H 1.07999 * 119.99627 * 359.72140 * 21 20 14 23 23 C 1.38811 * 120.00018 * 179.71797 * 21 20 14 24 24 N 1.31615 * 120.00103 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99744 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47228 * 59.99917 * 25 23 21 27 27 H 1.48493 * 109.47092 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47345 * 299.99886 * 25 23 21 29 29 C 1.47714 * 119.67755 * 354.60946 * 11 9 8 30 30 H 1.09009 * 109.46941 * 269.99528 * 1 2 3 31 31 H 1.09000 * 109.47402 * 29.99729 * 1 2 3 32 32 H 1.09003 * 109.47350 * 149.99889 * 1 2 3 33 33 H 0.96711 * 113.99993 * 89.97241 * 5 4 3 34 34 H 1.09000 * 109.25489 * 252.47553 * 12 11 9 35 35 H 1.08996 * 109.25964 * 11.95160 * 12 11 9 36 36 H 1.09002 * 109.87871 * 170.51068 * 13 12 11 37 37 H 1.09000 * 109.87974 * 291.51409 * 13 12 11 38 38 H 1.09004 * 110.95776 * 280.78792 * 18 16 14 39 39 H 1.08997 * 110.95895 * 157.05847 * 18 16 14 40 40 H 1.09001 * 109.92496 * 218.17111 * 19 18 16 41 41 H 1.09003 * 109.91974 * 96.87007 * 19 18 16 42 42 H 0.97005 * 119.99808 * 180.02562 * 24 23 21 43 43 H 1.09011 * 110.06615 * 112.83187 * 29 11 9 44 44 H 1.08998 * 110.16705 * 351.30475 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5532 0.7093 -0.0006 5 8 4.6150 1.5463 -0.0012 6 7 3.6181 -0.6387 0.0053 7 1 4.4243 -1.1781 0.0100 8 6 2.3110 -1.1059 -0.0005 9 6 1.8791 -2.5045 -0.0006 10 8 0.8730 -2.8310 0.6021 11 7 2.5954 -3.4309 -0.6679 12 6 2.2258 -4.8458 -0.5664 13 6 2.1750 -5.4931 -1.9624 14 6 3.4605 -5.1654 -2.6801 15 1 4.2814 -5.4847 -2.0381 16 6 3.5343 -3.6282 -2.8694 17 1 2.6296 -3.2431 -3.3398 18 6 4.7429 -3.5242 -3.8139 19 6 4.5226 -4.7444 -4.7488 20 7 3.6604 -5.7018 -4.0173 21 6 3.1435 -6.8704 -4.5099 22 1 2.5234 -7.4933 -3.8825 23 6 3.4166 -7.2541 -5.8157 24 7 4.1719 -6.4945 -6.5805 25 14 2.7109 -8.8477 -6.4878 26 1 1.2278 -8.7948 -6.4321 27 1 3.1468 -9.0270 -7.8960 28 1 3.1965 -9.9880 -5.6699 29 6 3.7456 -3.0106 -1.4939 30 1 -0.3633 -0.0001 1.0278 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5139 33 1 4.9240 1.7903 0.8821 34 1 2.9627 -5.3669 0.0449 35 1 1.2458 -4.9286 -0.0965 36 1 2.0662 -6.5734 -1.8663 37 1 1.3383 -5.0855 -2.5297 38 1 5.6782 -3.6197 -3.2623 39 1 4.7180 -2.5917 -4.3777 40 1 5.4797 -5.2105 -4.9830 41 1 4.0279 -4.4250 -5.6661 42 1 4.3624 -6.7625 -7.4931 43 1 4.6741 -3.3788 -1.0573 44 1 3.7748 -1.9238 -1.5723 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036744643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:27 Heat of formation + Delta-G solvation = 26.655916 kcal Electronic energy + Delta-G solvation = -27958.719077 eV Core-core repulsion = 24106.677512 eV Total energy + Delta-G solvation = -3852.041566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.59444 -40.12420 -38.40703 -37.65969 -35.49957 -33.65517 -32.67658 -32.06719 -30.81264 -29.68705 -28.23848 -27.28140 -25.03023 -23.87059 -22.97613 -22.43319 -21.15561 -20.17193 -20.00479 -19.70106 -18.77800 -17.73866 -16.75298 -16.36744 -16.24776 -15.94942 -15.21182 -14.87819 -14.54732 -14.32702 -14.00066 -13.84499 -13.49257 -13.29537 -13.09512 -12.91177 -12.65772 -12.61710 -12.38030 -12.14409 -11.85881 -11.64869 -11.49551 -10.87208 -10.86547 -10.72333 -10.59594 -10.30448 -10.22596 -10.21054 -10.03281 -9.94665 -9.69113 -9.58776 -8.81161 -8.67974 -8.51250 -6.91052 -5.77327 -3.11020 1.02422 2.00098 2.50037 2.75639 3.08765 3.37313 3.42030 3.42884 3.56521 4.31017 4.44202 4.61876 4.71973 4.84710 5.02217 5.15919 5.23873 5.34400 5.37011 5.38732 5.50074 5.65092 5.69110 5.73727 5.75022 5.78629 5.81922 5.99703 6.06669 6.12469 6.22013 6.28977 6.33974 6.37627 6.50495 6.55317 6.71762 6.95132 7.19023 7.26697 7.47210 7.52732 7.54558 7.73875 7.98974 8.17726 9.13289 9.76747 10.43519 11.35123 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.003405 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.535053 B = 8220.224447 C = 8951.690239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.103 3.897 3 N -0.486 5.486 4 C 0.405 3.595 5 O -0.440 6.440 6 N -0.554 5.554 7 H 0.425 0.575 8 C -0.071 4.071 9 C 0.592 3.408 10 O -0.526 6.526 11 N -0.602 5.602 12 C 0.119 3.881 13 C -0.131 4.131 14 C 0.171 3.829 15 H 0.014 0.986 16 C -0.124 4.124 17 H 0.082 0.918 18 C -0.136 4.136 19 C 0.177 3.823 20 N -0.592 5.592 21 C -0.229 4.229 22 H 0.079 0.921 23 C -0.006 4.006 24 N -0.922 5.922 25 Si 0.911 3.089 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.109 3.891 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.405 0.595 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.056 0.944 42 H 0.253 0.747 43 H 0.073 0.927 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 12.546 14.892 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.031 4.031 3 N -0.217 5.217 4 C 0.104 3.896 5 O -0.241 6.241 6 N -0.174 5.174 7 H 0.266 0.734 8 C -0.185 4.185 9 C 0.379 3.621 10 O -0.402 6.402 11 N -0.334 5.334 12 C -0.003 4.003 13 C -0.170 4.170 14 C 0.063 3.937 15 H 0.032 0.968 16 C -0.144 4.144 17 H 0.100 0.900 18 C -0.175 4.175 19 C 0.053 3.947 20 N -0.317 5.317 21 C -0.357 4.357 22 H 0.096 0.904 23 C -0.202 4.202 24 N -0.569 5.569 25 Si 0.741 3.259 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 C -0.014 4.014 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.263 0.737 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.146 13.034 14.382 19.411 hybrid contribution 0.883 -1.748 -0.088 1.960 sum 1.029 11.286 14.295 18.242 Atomic orbital electron populations 1.20212 0.86067 1.03371 1.03363 1.20862 0.96776 0.85856 0.99577 1.70249 0.98603 1.30306 1.22526 1.20186 0.87402 0.78713 1.03327 1.84870 1.43298 1.61566 1.34327 1.44067 1.08813 1.07877 1.56675 0.73396 1.20756 0.83039 0.95326 1.19416 1.16817 0.83352 0.82489 0.79394 1.90844 1.24781 1.79866 1.44706 1.48250 1.30651 1.07558 1.46983 1.21687 1.01903 0.78606 0.98145 1.21774 1.00150 1.00994 0.94126 1.20324 0.94451 0.90185 0.88770 0.96828 1.22542 1.00046 0.98639 0.93198 0.90000 1.22732 0.96040 1.00503 0.98231 1.21535 0.94796 0.85756 0.92609 1.44170 1.57464 1.22083 1.07945 1.18958 1.25345 0.95816 0.95599 0.90356 1.24791 1.00057 0.98867 0.96533 1.69919 1.41187 1.37826 1.07943 0.86219 0.78654 0.82969 0.78042 1.21116 1.21588 1.21149 1.21998 0.88068 0.99613 0.91683 0.90146 0.90628 0.90218 0.73710 0.91688 0.88865 0.90311 0.91410 0.92354 0.92028 0.94201 0.92624 0.93647 0.90897 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 9.81 36.00 0.35 -0.46 16 2 C 0.10 1.35 7.13 -82.54 -0.59 0.76 16 3 N -0.49 -6.32 11.22 -10.83 -0.12 -6.44 16 4 C 0.40 4.29 9.43 -89.59 -0.84 3.45 16 5 O -0.44 -3.41 13.62 -17.30 -0.24 -3.65 16 6 N -0.55 -5.45 4.75 -10.90 -0.05 -5.50 16 7 H 0.42 3.12 7.50 -40.82 -0.31 2.81 16 8 C -0.07 -0.89 6.00 -81.97 -0.49 -1.38 16 9 C 0.59 8.40 7.35 -12.98 -0.10 8.31 16 10 O -0.53 -8.65 15.39 5.15 0.08 -8.57 16 11 N -0.60 -8.15 3.00 -174.14 -0.52 -8.68 16 12 C 0.12 1.66 6.36 -3.49 -0.02 1.64 16 13 C -0.13 -2.22 5.46 -27.32 -0.15 -2.37 16 14 C 0.17 3.26 2.55 -68.49 -0.17 3.09 16 15 H 0.01 0.28 7.94 -51.93 -0.41 -0.14 16 16 C -0.12 -2.03 2.82 -89.53 -0.25 -2.28 16 17 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 18 C -0.14 -2.33 6.54 -25.13 -0.16 -2.50 16 19 C 0.18 4.10 5.45 -1.92 -0.01 4.09 16 20 N -0.59 -14.34 3.36 -163.68 -0.55 -14.89 16 21 C -0.23 -6.12 9.91 -15.06 -0.15 -6.27 16 22 H 0.08 2.01 7.28 -52.49 -0.38 1.63 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 24 N -0.92 -26.45 10.44 55.49 0.58 -25.87 16 25 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 C 0.11 1.37 4.94 -3.76 -0.02 1.35 16 30 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.94 7.51 -51.93 -0.39 0.55 16 33 H 0.41 0.89 9.06 45.56 0.41 1.31 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.32 6.92 -51.93 -0.36 0.96 16 36 H 0.08 1.35 7.70 -51.93 -0.40 0.95 16 37 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 38 H 0.06 0.90 8.12 -51.93 -0.42 0.47 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 1.01 7.77 -51.93 -0.40 0.61 16 41 H 0.06 1.45 7.21 -51.93 -0.37 1.07 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.07 0.79 8.12 -51.92 -0.42 0.37 16 44 H 0.08 0.91 4.87 -51.93 -0.25 0.66 16 LS Contribution 349.02 15.07 5.26 5.26 Total: -1.00 -33.40 349.02 -8.67 -42.08 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.38 Total: 2.42 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -2.70 Total: 7.16 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.67 Total: -61.37 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.16 Total: -12.21 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.40 -8.67 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036744643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.732 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds