Wall clock time and date at job start Tue Mar 31 2020 13:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35285 * 117.00012 * 2 1 4 4 N 1.32765 * 120.61578 * 359.97438 * 3 2 1 5 5 C 1.31726 * 120.87643 * 180.02562 * 4 3 2 6 6 C 1.50701 * 118.90605 * 180.02562 * 5 4 3 7 7 N 1.31942 * 122.19390 * 0.02562 * 5 4 3 8 8 C 1.32194 * 121.13613 * 359.97438 * 7 5 4 9 9 C 1.39802 * 118.98203 * 0.02562 * 8 7 5 10 10 C 1.47536 * 120.97603 * 180.02562 * 9 8 7 11 11 O 1.21595 * 119.99840 * 179.97438 * 10 9 8 12 12 N 1.34775 * 120.00400 * 359.97438 * 10 9 8 13 13 C 1.46495 * 119.99995 * 180.02562 * 12 10 9 14 14 C 1.52993 * 110.88997 * 62.43019 * 13 12 10 15 15 C 1.55159 * 111.00343 * 186.35437 * 13 12 10 16 16 C 1.54316 * 102.94485 * 82.57255 * 15 13 12 17 17 N 1.47019 * 107.27478 * 22.19343 * 16 15 13 18 18 C 1.36938 * 125.65449 * 181.03034 * 17 16 15 19 19 H 1.07994 * 120.00463 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99659 * 0.03480 * 18 17 16 21 21 N 1.31626 * 120.00288 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00089 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46697 * 60.00274 * 22 20 18 24 24 H 1.48494 * 109.47081 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46932 * 300.00426 * 22 20 18 26 26 C 1.47429 * 108.69988 * 1.06016 * 17 16 15 27 27 H 1.08999 * 109.46928 * 59.99784 * 1 2 3 28 28 H 1.09001 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46752 * 300.00251 * 1 2 3 30 30 H 1.08997 * 109.47195 * 269.98108 * 6 5 4 31 31 H 1.08999 * 109.46494 * 29.98272 * 6 5 4 32 32 H 1.09000 * 109.46758 * 149.97510 * 6 5 4 33 33 H 1.08000 * 120.50611 * 179.97438 * 8 7 5 34 34 H 0.96999 * 119.99731 * 0.02562 * 12 10 9 35 35 H 1.09006 * 109.47156 * 60.69580 * 14 13 12 36 36 H 1.09001 * 109.47584 * 180.69854 * 14 13 12 37 37 H 1.09000 * 109.47007 * 300.69983 * 14 13 12 38 38 H 1.08997 * 110.71981 * 200.93734 * 15 13 12 39 39 H 1.08999 * 110.71855 * 324.20453 * 15 13 12 40 40 H 1.09002 * 109.88510 * 262.77675 * 16 15 13 41 41 H 1.09002 * 110.01625 * 141.68876 * 16 15 13 42 42 H 0.96998 * 120.00257 * 179.97438 * 21 20 18 43 43 H 1.09001 * 110.36389 * 217.03679 * 26 17 16 44 44 H 1.08993 * 110.45919 * 94.76084 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 7 1.3321 2.3266 -0.0005 5 6 1.9248 3.5030 -0.0010 6 6 1.0744 4.7471 -0.0010 7 7 3.2382 3.6284 -0.0015 8 6 4.0262 2.5670 -0.0011 9 6 3.4481 1.2941 -0.0006 10 6 4.2858 0.0796 0.0005 11 8 3.7641 -1.0187 0.0014 12 7 5.6292 0.1875 0.0005 13 6 6.4609 -1.0184 0.0010 14 6 6.2261 -1.8436 -1.2657 15 6 7.9617 -0.6589 0.1613 16 6 8.1142 -0.4831 1.6868 17 7 7.0149 -1.2232 2.3235 18 6 6.7804 -1.3018 3.6704 19 1 5.9425 -1.8740 4.0402 20 6 7.6197 -0.6457 4.5603 21 7 8.6406 0.0523 4.1097 22 14 7.3003 -0.7534 6.3977 23 1 7.3606 -2.1734 6.8281 24 1 8.3317 0.0282 7.1261 25 1 5.9552 -0.2013 6.6995 26 6 6.2073 -1.8674 1.2718 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.8692 5.0470 -1.0286 31 1 0.1347 4.5447 0.5130 32 1 1.6041 5.5492 0.5128 33 1 5.1001 2.6814 -0.0019 34 1 6.0453 1.0637 0.0002 35 1 6.4891 -1.2491 -2.1406 36 1 6.8458 -2.7398 -1.2357 37 1 5.1759 -2.1298 -1.3233 38 1 8.5934 -1.4711 -0.1984 39 1 8.1933 0.2705 -0.3591 40 1 8.0490 0.5735 1.9466 41 1 9.0720 -0.8869 2.0150 42 1 9.2268 0.5111 4.7316 43 1 5.1505 -1.8452 1.5380 44 1 6.5365 -2.8943 1.1139 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046362359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:54 Heat of formation + Delta-G solvation = 11.331357 kcal Electronic energy + Delta-G solvation = -27913.221291 eV Core-core repulsion = 24060.515203 eV Total energy + Delta-G solvation = -3852.706088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.50773 -39.59524 -38.66730 -37.15987 -34.09724 -33.66771 -32.85837 -31.73975 -30.09408 -29.04236 -28.59934 -27.47538 -25.63722 -24.12585 -23.88669 -23.34313 -21.20782 -20.18509 -19.12886 -18.68862 -17.88822 -17.48335 -16.60766 -16.45415 -15.43341 -15.07055 -14.85734 -14.66867 -14.55111 -14.46031 -14.30697 -13.69510 -13.42516 -13.21356 -12.84428 -12.72473 -12.67513 -12.18181 -12.02167 -11.90225 -11.77735 -11.75469 -11.63026 -11.46965 -10.88057 -10.84710 -10.43094 -10.36744 -10.33515 -10.08415 -9.98291 -9.62742 -9.61653 -9.26061 -9.13731 -8.61552 -8.50168 -6.76590 -5.67763 -2.99229 0.40145 0.99560 2.74234 3.03157 3.35326 3.43338 3.47262 3.48689 3.67165 3.76934 3.87043 4.53716 4.57660 4.73000 4.97172 5.03941 5.11088 5.13448 5.21746 5.26617 5.32751 5.40965 5.45183 5.50944 5.62672 5.64187 5.74789 6.01619 6.02698 6.14673 6.17484 6.36919 6.41517 6.55683 6.62527 6.70582 6.86593 6.98977 7.15637 7.57415 7.58730 7.80659 7.83660 7.89948 8.29658 8.56786 9.27103 9.87063 10.53121 11.44258 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.004230 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.816037 B = 6617.315703 C = 7337.660564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.261 6.261 3 C 0.413 3.587 4 N -0.581 5.581 5 C 0.369 3.631 6 C -0.087 4.087 7 N -0.544 5.544 8 C 0.215 3.785 9 C -0.260 4.260 10 C 0.573 3.427 11 O -0.515 6.515 12 N -0.697 5.697 13 C 0.158 3.842 14 C -0.149 4.149 15 C -0.146 4.146 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.075 0.925 20 C -0.009 4.009 21 N -0.925 5.925 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.287 1.287 26 C 0.131 3.869 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.178 0.822 34 H 0.394 0.606 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.251 0.749 43 H 0.056 0.944 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.036 6.713 -13.261 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.161 6.161 3 C 0.225 3.775 4 N -0.312 5.312 5 C 0.103 3.897 6 C -0.145 4.145 7 N -0.263 5.263 8 C 0.050 3.950 9 C -0.269 4.269 10 C 0.357 3.643 11 O -0.391 6.391 12 N -0.348 5.348 13 C 0.072 3.928 14 C -0.208 4.208 15 C -0.185 4.185 16 C 0.052 3.948 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.573 5.573 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.214 1.214 26 C 0.004 3.996 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.195 0.805 34 H 0.229 0.771 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -12.789 6.421 -13.043 19.363 hybrid contribution 0.444 -0.227 1.137 1.242 sum -12.345 6.194 -11.905 18.235 Atomic orbital electron populations 1.23043 0.77119 1.03695 1.02446 1.86551 1.22667 1.22430 1.84497 1.20089 0.88341 0.85140 0.83938 1.68034 1.41166 0.98549 1.23501 1.23156 0.88275 0.92156 0.86088 1.20646 0.98362 0.91427 1.04111 1.68289 1.05374 1.33622 1.19015 1.23405 1.00733 0.85718 0.85134 1.21046 0.92441 0.97210 1.16198 1.17375 0.82022 0.87659 0.77207 1.90781 1.72896 1.26636 1.48803 1.45655 1.05009 1.09580 1.74598 1.21495 0.90317 0.85102 0.95899 1.21989 1.03382 0.99470 0.95920 1.23230 0.93244 1.00971 1.01033 1.21154 0.91977 0.96927 0.84712 1.44432 1.29367 1.57833 1.01276 1.19014 1.09506 1.26081 0.80339 0.90703 1.24742 0.97742 1.00101 0.97881 1.69932 1.17773 1.36971 1.32637 0.86229 0.77080 0.77473 0.85198 1.21201 1.21610 1.21361 1.21893 0.96671 0.93757 0.87261 0.92076 0.87968 0.91965 0.89204 0.89462 0.89030 0.80473 0.77136 0.93127 0.91765 0.91003 0.90774 0.91732 0.93686 0.93795 0.93847 0.92563 0.95678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.41 101.05 1.05 1.40 16 2 O -0.26 -4.08 8.73 -38.69 -0.34 -4.42 16 3 C 0.41 6.42 7.54 -16.19 -0.12 6.29 16 4 N -0.58 -7.92 9.26 -10.47 -0.10 -8.02 16 5 C 0.37 4.56 7.64 -157.13 -1.20 3.36 16 6 C -0.09 -0.69 10.31 36.01 0.37 -0.31 16 7 N -0.54 -7.17 10.31 -10.44 -0.11 -7.28 16 8 C 0.21 2.86 10.80 -16.81 -0.18 2.68 16 9 C -0.26 -4.06 5.92 -104.57 -0.62 -4.68 16 10 C 0.57 10.13 7.17 -12.47 -0.09 10.04 16 11 O -0.51 -10.50 12.09 -15.86 -0.19 -10.70 16 12 N -0.70 -11.47 5.13 -46.65 -0.24 -11.71 16 13 C 0.16 2.80 0.82 -129.67 -0.11 2.69 16 14 C -0.15 -2.27 8.62 37.15 0.32 -1.95 16 15 C -0.15 -2.55 5.99 -24.90 -0.15 -2.70 16 16 C 0.18 4.15 5.37 -3.07 -0.02 4.13 16 17 N -0.60 -15.54 3.39 -170.08 -0.58 -16.11 16 18 C -0.22 -6.32 10.28 -15.06 -0.15 -6.47 16 19 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -27.01 10.31 55.49 0.57 -26.44 16 22 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C 0.13 2.90 6.11 -2.52 -0.02 2.89 16 27 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.18 1.88 6.53 -52.49 -0.34 1.53 16 34 H 0.39 5.54 6.62 -40.82 -0.27 5.27 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 37 H 0.07 1.20 6.45 -51.93 -0.34 0.87 16 38 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 39 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 40 H 0.04 1.15 7.38 -51.93 -0.38 0.76 16 41 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.06 1.36 6.31 -51.93 -0.33 1.03 16 44 H 0.03 0.56 8.03 -51.93 -0.42 0.14 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -34.61 358.67 -7.83 -42.44 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.23 Total: 2.23 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: -1.01 Total: 17.01 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -0.45 Total: -69.56 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.53 Total: -15.11 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.61 -7.83 -42.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046362359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.768 kcal (2) G-P(sol) polarization free energy of solvation -34.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds