Wall clock time and date at job start Tue Mar 31 2020 13:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35285 * 117.00012 * 2 1 4 4 N 1.32765 * 120.61578 * 359.97438 * 3 2 1 5 5 C 1.31726 * 120.87643 * 180.02562 * 4 3 2 6 6 C 1.50701 * 118.90605 * 180.02562 * 5 4 3 7 7 N 1.31942 * 122.19390 * 0.02562 * 5 4 3 8 8 C 1.32194 * 121.13613 * 359.97438 * 7 5 4 9 9 C 1.39802 * 118.98203 * 0.02562 * 8 7 5 10 10 C 1.47536 * 120.97603 * 180.02562 * 9 8 7 11 11 O 1.21595 * 119.99840 * 179.97438 * 10 9 8 12 12 N 1.34775 * 120.00400 * 359.97438 * 10 9 8 13 13 C 1.46495 * 119.99995 * 180.02562 * 12 10 9 14 14 C 1.52993 * 110.88997 * 62.43019 * 13 12 10 15 15 C 1.55159 * 111.00343 * 186.35437 * 13 12 10 16 16 C 1.54316 * 102.94485 * 82.57255 * 15 13 12 17 17 N 1.47019 * 107.27478 * 22.19343 * 16 15 13 18 18 C 1.36938 * 125.65449 * 181.03034 * 17 16 15 19 19 H 1.07994 * 120.00463 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99659 * 0.03480 * 18 17 16 21 21 N 1.31626 * 120.00288 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00089 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46697 * 60.00274 * 22 20 18 24 24 H 1.48494 * 109.47081 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46932 * 300.00426 * 22 20 18 26 26 C 1.47429 * 108.69988 * 1.06016 * 17 16 15 27 27 H 1.08999 * 109.46928 * 59.99784 * 1 2 3 28 28 H 1.09001 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46752 * 300.00251 * 1 2 3 30 30 H 1.08997 * 109.47195 * 269.98108 * 6 5 4 31 31 H 1.08999 * 109.46494 * 29.98272 * 6 5 4 32 32 H 1.09000 * 109.46758 * 149.97510 * 6 5 4 33 33 H 1.08000 * 120.50611 * 179.97438 * 8 7 5 34 34 H 0.96999 * 119.99731 * 0.02562 * 12 10 9 35 35 H 1.09006 * 109.47156 * 60.69580 * 14 13 12 36 36 H 1.09001 * 109.47584 * 180.69854 * 14 13 12 37 37 H 1.09000 * 109.47007 * 300.69983 * 14 13 12 38 38 H 1.08997 * 110.71981 * 200.93734 * 15 13 12 39 39 H 1.08999 * 110.71855 * 324.20453 * 15 13 12 40 40 H 1.09002 * 109.88510 * 262.77675 * 16 15 13 41 41 H 1.09002 * 110.01625 * 141.68876 * 16 15 13 42 42 H 0.96998 * 120.00257 * 179.97438 * 21 20 18 43 43 H 1.09001 * 110.36389 * 217.03679 * 26 17 16 44 44 H 1.08993 * 110.45919 * 94.76084 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 7 1.3321 2.3266 -0.0005 5 6 1.9248 3.5030 -0.0010 6 6 1.0744 4.7471 -0.0010 7 7 3.2382 3.6284 -0.0015 8 6 4.0262 2.5670 -0.0011 9 6 3.4481 1.2941 -0.0006 10 6 4.2858 0.0796 0.0005 11 8 3.7641 -1.0187 0.0014 12 7 5.6292 0.1875 0.0005 13 6 6.4609 -1.0184 0.0010 14 6 6.2261 -1.8436 -1.2657 15 6 7.9617 -0.6589 0.1613 16 6 8.1142 -0.4831 1.6868 17 7 7.0149 -1.2232 2.3235 18 6 6.7804 -1.3018 3.6704 19 1 5.9425 -1.8740 4.0402 20 6 7.6197 -0.6457 4.5603 21 7 8.6406 0.0523 4.1097 22 14 7.3003 -0.7534 6.3977 23 1 7.3606 -2.1734 6.8281 24 1 8.3317 0.0282 7.1261 25 1 5.9552 -0.2013 6.6995 26 6 6.2073 -1.8674 1.2718 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.8692 5.0470 -1.0286 31 1 0.1347 4.5447 0.5130 32 1 1.6041 5.5492 0.5128 33 1 5.1001 2.6814 -0.0019 34 1 6.0453 1.0637 0.0002 35 1 6.4891 -1.2491 -2.1406 36 1 6.8458 -2.7398 -1.2357 37 1 5.1759 -2.1298 -1.3233 38 1 8.5934 -1.4711 -0.1984 39 1 8.1933 0.2705 -0.3591 40 1 8.0490 0.5735 1.9466 41 1 9.0720 -0.8869 2.0150 42 1 9.2268 0.5111 4.7316 43 1 5.1505 -1.8452 1.5380 44 1 6.5365 -2.8943 1.1139 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046362359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:53 Heat of formation + Delta-G solvation = -13.782445 kcal Electronic energy + Delta-G solvation = -27914.310307 eV Core-core repulsion = 24060.515203 eV Total energy + Delta-G solvation = -3853.795105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.57355 -41.00196 -39.71928 -38.74849 -35.70324 -34.90844 -33.94700 -33.37869 -31.69381 -30.40603 -29.82968 -28.41481 -27.50286 -25.51546 -25.08622 -24.58535 -22.61094 -21.93367 -20.55791 -19.75632 -19.22928 -18.75999 -18.35953 -17.50335 -17.00787 -16.61481 -16.09433 -16.00569 -15.72784 -15.68701 -15.53984 -15.46627 -14.95242 -14.30713 -14.17817 -13.87677 -13.57491 -13.50747 -13.33898 -13.28605 -13.07976 -13.03918 -12.83001 -12.74513 -12.67677 -12.53334 -12.13101 -12.04767 -11.95457 -11.69301 -11.52598 -11.43190 -10.74069 -10.69495 -10.59043 -10.27425 -9.94446 -8.85127 -7.85631 -5.18686 -0.65871 -0.07244 1.42151 1.44382 1.50995 1.74271 1.80420 2.09773 2.47665 2.63773 2.76166 2.89517 3.32081 3.47620 3.60914 3.65270 3.73725 4.02470 4.07179 4.13952 4.21550 4.31174 4.31561 4.60574 4.67338 4.70005 4.71854 4.71947 4.80544 4.88185 4.89848 4.96434 5.06282 5.11022 5.24710 5.38376 5.42724 5.59289 5.65205 5.70781 5.79589 5.96856 6.21217 6.56994 6.83251 7.12670 7.25581 7.78456 8.42510 9.23771 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.004230 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.816037 B = 6617.315703 C = 7337.660564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.288 6.288 3 C 0.401 3.599 4 N -0.582 5.582 5 C 0.366 3.634 6 C -0.085 4.085 7 N -0.551 5.551 8 C 0.225 3.775 9 C -0.288 4.288 10 C 0.571 3.429 11 O -0.550 6.550 12 N -0.693 5.693 13 C 0.169 3.831 14 C -0.139 4.139 15 C -0.127 4.127 16 C 0.184 3.816 17 N -0.621 5.621 18 C -0.243 4.243 19 H 0.065 0.935 20 C -0.056 4.056 21 N -0.943 5.943 22 Si 0.970 3.030 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.284 1.284 26 C 0.128 3.872 27 H 0.073 0.927 28 H 0.120 0.880 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.202 0.798 34 H 0.406 0.594 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.019 0.981 41 H 0.009 0.991 42 H 0.248 0.752 43 H 0.029 0.971 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.444 8.117 -14.496 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.189 6.189 3 C 0.213 3.787 4 N -0.314 5.314 5 C 0.101 3.899 6 C -0.143 4.143 7 N -0.270 5.270 8 C 0.060 3.940 9 C -0.297 4.297 10 C 0.358 3.642 11 O -0.428 6.428 12 N -0.345 5.345 13 C 0.082 3.918 14 C -0.198 4.198 15 C -0.165 4.165 16 C 0.059 3.941 17 N -0.347 5.347 18 C -0.372 4.372 19 H 0.083 0.917 20 C -0.249 4.249 21 N -0.592 5.592 22 Si 0.799 3.201 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.211 1.211 26 C 0.002 3.998 27 H 0.091 0.909 28 H 0.138 0.862 29 H 0.083 0.917 30 H 0.130 0.870 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.218 0.782 34 H 0.243 0.757 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.038 0.962 41 H 0.027 0.973 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -13.213 7.841 -14.303 20.992 hybrid contribution 0.481 -0.646 1.546 1.743 sum -12.733 7.195 -12.757 19.407 Atomic orbital electron populations 1.23292 0.75052 1.05175 1.03133 1.86516 1.24952 1.23069 1.84406 1.20322 0.88660 0.85687 0.84002 1.68154 1.40849 0.98438 1.23982 1.24114 0.88646 0.93094 0.84071 1.20846 0.98123 0.89524 1.05769 1.68427 1.05836 1.33208 1.19541 1.23774 1.01882 0.84904 0.83489 1.20985 0.92534 0.97176 1.18978 1.17682 0.82324 0.87920 0.76317 1.90755 1.73545 1.28088 1.50452 1.45595 1.04753 1.09876 1.74231 1.21376 0.90517 0.85171 0.94763 1.21910 1.02579 0.99937 0.95325 1.23111 0.93181 1.03694 0.96523 1.20969 0.89700 0.94713 0.88684 1.44677 1.30573 1.58277 1.01184 1.19251 1.09428 1.26240 0.82320 0.91723 1.25461 0.97689 1.00040 1.01725 1.70123 1.18192 1.37317 1.33525 0.85287 0.76857 0.77546 0.80441 1.20612 1.21256 1.21098 1.21988 0.94510 0.94577 0.88750 0.90853 0.86192 0.91699 0.87007 0.88309 0.87904 0.78186 0.75702 0.90240 0.90543 0.92755 0.88826 0.88011 0.96246 0.97267 0.94267 0.95287 0.95736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.41 113.37 1.18 1.76 16 2 O -0.29 -9.16 8.73 -65.49 -0.57 -9.73 16 3 C 0.40 12.46 7.54 85.17 0.64 13.10 16 4 N -0.58 -15.30 9.26 -299.85 -2.78 -18.08 16 5 C 0.37 8.39 7.64 138.73 1.06 9.45 16 6 C -0.08 -1.10 10.31 71.24 0.73 -0.36 16 7 N -0.55 -13.59 10.31 -186.93 -1.93 -15.52 16 8 C 0.22 5.71 10.80 85.02 0.92 6.63 16 9 C -0.29 -8.95 5.92 -19.83 -0.12 -9.07 16 10 C 0.57 20.31 7.17 86.70 0.62 20.93 16 11 O -0.55 -23.02 12.09 16.20 0.20 -22.83 16 12 N -0.69 -22.17 5.13 -419.77 -2.15 -24.32 16 13 C 0.17 5.75 0.82 5.00 0.00 5.76 16 14 C -0.14 -3.94 8.62 71.98 0.62 -3.32 16 15 C -0.13 -4.15 5.99 31.78 0.19 -3.96 16 16 C 0.18 8.69 5.37 86.73 0.47 9.15 16 17 N -0.62 -32.73 3.39 -692.00 -2.35 -35.08 16 18 C -0.24 -14.30 10.28 84.03 0.86 -13.43 16 19 H 0.06 3.81 7.83 -2.91 -0.02 3.79 16 20 C -0.06 -3.22 5.49 84.86 0.47 -2.75 16 21 N -0.94 -56.02 10.31 21.65 0.22 -55.80 16 22 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 26 C 0.13 5.77 6.11 86.86 0.53 6.30 16 27 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 28 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 1.31 8.12 -2.38 -0.02 1.29 16 30 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.20 3.87 6.53 -2.91 -0.02 3.86 16 34 H 0.41 10.76 6.62 -92.71 -0.61 10.15 16 35 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.08 1.97 8.13 -2.39 -0.02 1.95 16 37 H 0.05 1.77 6.45 -2.39 -0.02 1.75 16 38 H 0.09 2.76 8.04 -2.39 -0.02 2.74 16 39 H 0.10 2.62 8.05 -2.39 -0.02 2.60 16 40 H 0.02 1.00 7.38 -2.39 -0.02 0.98 16 41 H 0.01 0.49 7.50 -2.39 -0.02 0.47 16 42 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.03 1.46 6.31 -2.39 -0.02 1.44 16 44 H 0.02 1.11 8.03 -2.39 -0.02 1.09 16 Total: -1.00 -77.74 358.67 1.26 -76.47 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.42 Total: 15.58 kcal Atomic # 6 Polarization: 32.01 SS G_CDS: 8.18 Total: 40.19 kcal Atomic # 7 Polarization: -139.82 SS G_CDS: -8.98 Total: -148.80 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.38 Total: -32.56 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -77.74 1.26 -76.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046362359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.692 kcal (2) G-P(sol) polarization free energy of solvation -77.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds