Wall clock time and date at job start Tue Mar 31 2020 13:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33226 * 126.01930 * 2 1 4 4 C 1.31543 * 109.76195 * 180.28824 * 3 2 1 5 5 O 1.35197 * 125.49466 * 179.77067 * 4 3 2 6 6 N 1.34945 * 109.00947 * 359.74932 * 4 3 2 7 7 H 0.97005 * 126.53940 * 180.02562 * 6 4 3 8 8 C 1.36721 * 126.01875 * 179.86448 * 2 1 3 9 9 C 1.46382 * 126.82566 * 359.97438 * 8 2 1 10 10 O 1.21737 * 119.99430 * 0.59127 * 9 8 2 11 11 N 1.34774 * 119.99921 * 180.59251 * 9 8 2 12 12 C 1.46503 * 119.99463 * 175.16842 * 11 9 8 13 13 H 1.08994 * 109.18237 * 51.73183 * 12 11 9 14 14 C 1.53030 * 109.32532 * 292.17339 * 12 11 9 15 15 C 1.53970 * 108.93956 * 295.21455 * 14 12 11 16 16 H 1.09004 * 112.99419 * 168.02106 * 15 14 12 17 17 C 1.55425 * 106.41385 * 293.75224 * 15 14 12 18 18 C 1.55173 * 100.35362 * 73.37930 * 17 15 14 19 19 H 1.08994 * 112.48415 * 162.67050 * 18 17 15 20 20 C 1.53274 * 109.29894 * 171.49073 * 12 11 9 21 21 N 1.47785 * 104.25416 * 40.54777 * 18 17 15 22 22 C 1.36941 * 125.85277 * 153.55092 * 21 18 17 23 23 H 1.07997 * 120.00398 * 18.02884 * 22 21 18 24 24 C 1.38821 * 119.99839 * 198.01645 * 22 21 18 25 25 N 1.31618 * 119.99834 * 352.02229 * 24 22 21 26 26 Si 1.86791 * 119.99835 * 172.01910 * 24 22 21 27 27 H 1.48504 * 109.47523 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47131 * 120.00238 * 26 24 22 29 29 H 1.48497 * 109.47522 * 240.00479 * 26 24 22 30 30 C 1.47078 * 108.29230 * 333.53595 * 21 18 17 31 31 H 1.09002 * 109.47376 * 270.14126 * 1 2 3 32 32 H 1.09003 * 109.47406 * 30.13567 * 1 2 3 33 33 H 1.08995 * 109.47463 * 150.13529 * 1 2 3 34 34 H 0.96701 * 114.00034 * 269.97642 * 5 4 3 35 35 H 0.96999 * 120.00195 * 355.17264 * 11 9 8 36 36 H 1.09001 * 109.57830 * 175.34110 * 14 12 11 37 37 H 1.09002 * 109.57817 * 55.08331 * 14 12 11 38 38 H 1.08996 * 111.23646 * 191.15306 * 17 15 14 39 39 H 1.09003 * 111.23942 * 315.60217 * 17 15 14 40 40 H 1.09002 * 109.49936 * 305.23747 * 20 12 11 41 41 H 1.08999 * 109.56380 * 185.08578 * 20 12 11 42 42 H 0.97003 * 119.99434 * 179.97438 * 25 24 22 43 43 H 1.08994 * 109.98122 * 241.74778 * 30 21 18 44 44 H 1.09004 * 110.01348 * 120.47652 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7093 -0.0062 5 8 4.6149 1.5463 -0.0125 6 7 3.6180 -0.6386 -0.0049 7 1 4.4242 -1.1780 -0.0081 8 6 2.3109 -1.1058 0.0026 9 6 1.8791 -2.5045 0.0064 10 8 0.6923 -2.7751 -0.0033 11 7 2.7956 -3.4926 0.0208 12 6 2.3656 -4.8888 0.1315 13 1 1.6097 -5.0919 -0.6270 14 6 1.7667 -5.1256 1.5196 15 6 2.8695 -4.9405 2.5780 16 1 2.4796 -4.8882 3.5946 17 6 3.8910 -6.0902 2.3536 18 6 4.5817 -5.5998 1.0534 19 1 5.5343 -6.0982 0.8740 20 6 3.5714 -5.8091 -0.0884 21 7 4.7348 -4.1431 1.2500 22 6 5.6908 -3.3518 0.6711 23 1 6.2265 -3.7011 -0.1992 24 6 5.9712 -2.1004 1.2028 25 7 5.2158 -1.6086 2.1618 26 14 7.4207 -1.1148 0.5572 27 1 8.1052 -1.8841 -0.5129 28 1 6.9353 0.1755 0.0053 29 1 8.3736 -0.8521 1.6653 30 6 3.6842 -3.6890 2.1737 31 1 -0.3634 0.0025 1.0277 32 1 -0.3634 0.8888 -0.5159 33 1 -0.3634 -0.8911 -0.5117 34 1 4.9195 1.7887 -0.8977 35 1 3.7398 -3.2794 -0.0421 36 1 1.3705 -6.1394 1.5784 37 1 0.9648 -4.4093 1.6986 38 1 4.6012 -6.1539 3.1779 39 1 3.3851 -7.0429 2.1966 40 1 4.0434 -5.5690 -1.0412 41 1 3.2410 -6.8478 -0.0968 42 1 5.4120 -0.7344 2.5335 43 1 3.0364 -2.9679 1.6753 44 1 4.1344 -3.2363 3.0572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047090346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:40 Heat of formation + Delta-G solvation = 38.069818 kcal Electronic energy + Delta-G solvation = -30264.219747 eV Core-core repulsion = 26412.673125 eV Total energy + Delta-G solvation = -3851.546622 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.25772 -42.07414 -39.43372 -38.31112 -35.70321 -35.11064 -33.75478 -32.57491 -32.12615 -31.52859 -29.58284 -27.77710 -27.07938 -24.90911 -24.20020 -23.06705 -21.90565 -21.41234 -20.78223 -20.33178 -20.09445 -19.00821 -18.50964 -17.48963 -16.98296 -16.76992 -16.49819 -16.16271 -15.98826 -15.33386 -14.96991 -14.77569 -14.21010 -14.19288 -13.96178 -13.90663 -13.52369 -13.49198 -13.34094 -13.31775 -13.15220 -13.07132 -13.02139 -12.76078 -12.52883 -12.28940 -11.92896 -11.76619 -11.38469 -11.35835 -11.10552 -11.00701 -10.92509 -10.76070 -10.63057 -9.46529 -9.07293 -8.80479 -7.96584 -5.38506 0.30566 1.34939 1.43271 1.51223 1.57807 1.73067 2.31598 2.35030 2.56340 2.97324 3.11061 3.60149 3.80937 3.93454 3.99063 4.05416 4.09019 4.28425 4.35780 4.45087 4.47827 4.65067 4.74231 4.78624 4.88329 4.88752 4.92479 5.00003 5.06985 5.12460 5.13939 5.26185 5.33108 5.39725 5.48718 5.50650 5.57430 5.75001 5.83160 5.86650 5.91501 6.14166 6.67116 6.75601 6.90646 7.00307 7.41918 7.63321 8.36068 9.01698 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011670 B = 0.008571 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.657541 B = 3265.997585 C = 5073.832978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.080 3.920 3 N -0.512 5.512 4 C 0.393 3.607 5 O -0.446 6.446 6 N -0.522 5.522 7 H 0.433 0.567 8 C -0.090 4.090 9 C 0.580 3.420 10 O -0.567 6.567 11 N -0.695 5.695 12 C 0.152 3.848 13 H 0.072 0.928 14 C -0.115 4.115 15 C -0.117 4.117 16 H 0.079 0.921 17 C -0.113 4.113 18 C 0.139 3.861 19 H 0.075 0.925 20 C -0.129 4.129 21 N -0.605 5.605 22 C -0.256 4.256 23 H 0.089 0.911 24 C -0.044 4.044 25 N -0.905 5.905 26 Si 0.923 3.077 27 H -0.264 1.264 28 H -0.266 1.266 29 H -0.303 1.303 30 C 0.145 3.855 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.420 0.580 35 H 0.424 0.576 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.248 0.752 43 H 0.047 0.953 44 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 -5.663 -5.789 8.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.056 4.056 3 N -0.244 5.244 4 C 0.091 3.909 5 O -0.250 6.250 6 N -0.143 5.143 7 H 0.280 0.720 8 C -0.207 4.207 9 C 0.367 3.633 10 O -0.449 6.449 11 N -0.358 5.358 12 C 0.048 3.952 13 H 0.090 0.910 14 C -0.153 4.153 15 C -0.136 4.136 16 H 0.097 0.903 17 C -0.151 4.151 18 C 0.033 3.967 19 H 0.093 0.907 20 C -0.168 4.168 21 N -0.332 5.332 22 C -0.386 4.386 23 H 0.107 0.893 24 C -0.241 4.241 25 N -0.550 5.550 26 Si 0.750 3.250 27 H -0.188 1.188 28 H -0.191 1.191 29 H -0.230 1.230 30 C 0.021 3.979 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.280 0.720 35 H 0.276 0.724 36 H 0.114 0.886 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.078 0.922 41 H 0.125 0.875 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -4.233 -4.841 -5.181 8.258 hybrid contribution 2.623 0.300 -0.099 2.642 sum -1.610 -4.541 -5.280 7.147 Atomic orbital electron populations 1.20242 0.84634 1.03958 1.03227 1.21305 0.97787 0.85940 1.00589 1.70124 0.98912 1.30800 1.24599 1.20241 0.87514 0.79495 1.03621 1.84826 1.43061 1.61406 1.35687 1.44282 1.09828 1.07926 1.52215 0.71956 1.21060 0.83782 0.95897 1.19991 1.16841 0.86019 0.83352 0.77133 1.90682 1.16647 1.83646 1.53918 1.47513 1.12431 1.06127 1.69704 1.20980 0.96707 0.80404 0.97089 0.90963 1.22016 0.96912 1.02414 0.93993 1.22745 0.96022 0.96768 0.98112 0.90317 1.22918 0.97284 0.97705 0.97182 1.21939 0.96388 0.84350 0.94039 0.90673 1.22483 0.95194 0.99758 0.99414 1.45041 1.32126 1.03155 1.52832 1.19474 1.13377 0.97247 1.08466 0.89295 1.25666 0.99871 0.99990 0.98587 1.70225 1.38122 1.17766 1.28875 0.85899 0.81274 0.79950 0.77901 1.18825 1.19148 1.23035 1.21942 0.89137 0.94208 0.92640 0.90726 0.89538 0.89534 0.72030 0.72414 0.88612 0.93422 0.93014 0.88188 0.92233 0.87511 0.94232 0.93513 0.97277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.07 9.88 71.23 0.70 -1.37 16 2 C 0.08 3.23 7.14 41.99 0.30 3.53 16 3 N -0.51 -21.09 11.22 -301.68 -3.39 -24.48 16 4 C 0.39 16.04 9.43 179.99 1.70 17.73 16 5 O -0.45 -15.71 13.52 -84.78 -1.15 -16.86 16 6 N -0.52 -22.26 5.54 -300.14 -1.66 -23.92 16 7 H 0.43 18.96 4.23 -92.70 -0.39 18.57 16 8 C -0.09 -3.85 6.83 39.80 0.27 -3.58 16 9 C 0.58 24.40 5.97 86.36 0.52 24.92 16 10 O -0.57 -24.22 13.59 -4.47 -0.06 -24.28 16 11 N -0.69 -27.14 2.78 -446.28 -1.24 -28.38 16 12 C 0.15 4.94 2.76 45.09 0.12 5.06 16 13 H 0.07 2.26 8.02 -2.39 -0.02 2.24 16 14 C -0.12 -3.62 5.13 30.93 0.16 -3.46 16 15 C -0.12 -4.07 4.33 -9.05 -0.04 -4.11 16 16 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 17 C -0.11 -3.32 6.18 32.17 0.20 -3.12 16 18 C 0.14 4.53 4.30 45.79 0.20 4.72 16 19 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 20 C -0.13 -3.56 5.42 30.99 0.17 -3.39 16 21 N -0.60 -25.19 1.76 -664.44 -1.17 -26.36 16 22 C -0.26 -11.54 8.08 84.04 0.68 -10.86 16 23 H 0.09 3.84 7.84 -2.91 -0.02 3.82 16 24 C -0.04 -2.09 3.24 84.86 0.27 -1.82 16 25 N -0.90 -46.52 9.54 21.65 0.21 -46.31 16 26 Si 0.92 38.19 29.19 68.60 2.00 40.19 16 27 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 28 H -0.27 -10.47 7.00 99.48 0.70 -9.77 16 29 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 30 C 0.15 6.42 4.09 86.85 0.36 6.78 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.09 2.88 6.45 -2.39 -0.02 2.86 16 34 H 0.42 9.63 9.06 -74.06 -0.67 8.96 16 35 H 0.42 17.59 3.33 -92.71 -0.31 17.28 16 36 H 0.10 2.34 7.97 -2.39 -0.02 2.32 16 37 H 0.05 1.74 6.83 -2.39 -0.02 1.72 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.10 2.21 7.75 -2.39 -0.02 2.19 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.11 2.17 8.00 -2.39 -0.02 2.15 16 42 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 43 H 0.05 2.25 3.69 -14.91 -0.05 2.19 16 44 H 0.01 0.48 6.68 -2.39 -0.02 0.47 16 Total: -1.00 -60.19 328.15 -1.21 -61.40 By element: Atomic # 1 Polarization: 58.31 SS G_CDS: -0.35 Total: 57.96 kcal Atomic # 6 Polarization: 25.43 SS G_CDS: 5.60 Total: 31.04 kcal Atomic # 7 Polarization: -142.19 SS G_CDS: -7.26 Total: -149.44 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -1.21 Total: -41.14 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.00 Total: 40.19 kcal Total: -60.19 -1.21 -61.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047090346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.468 kcal (2) G-P(sol) polarization free energy of solvation -60.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds