Wall clock time and date at job start Tue Mar 31 2020 13:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33221 * 126.02001 * 2 1 4 4 C 1.31538 * 109.76004 * 180.02562 * 3 2 1 5 5 O 1.35201 * 125.48813 * 180.02562 * 4 3 2 6 6 N 1.34941 * 109.01534 * 359.72321 * 4 3 2 7 7 H 0.97001 * 126.54814 * 180.27259 * 6 4 3 8 8 C 1.36724 * 126.01237 * 179.97438 * 2 1 3 9 9 C 1.46373 * 126.83193 * 0.02562 * 8 2 1 10 10 O 1.21733 * 119.99814 * 359.97438 * 9 8 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 8 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 8 13 13 H 1.08996 * 109.32788 * 35.07877 * 12 11 9 14 14 C 1.53031 * 109.32390 * 154.72300 * 12 11 9 15 15 C 1.53972 * 108.82515 * 175.67861 * 14 12 11 16 16 H 1.09004 * 112.99641 * 168.09114 * 15 14 12 17 17 C 1.55428 * 106.41384 * 293.81710 * 15 14 12 18 18 C 1.55168 * 100.35395 * 73.37794 * 17 15 14 19 19 H 1.09009 * 112.48607 * 162.66947 * 18 17 15 20 20 C 1.52985 * 109.32273 * 275.60929 * 12 11 9 21 21 N 1.47792 * 104.25375 * 40.55681 * 18 17 15 22 22 C 1.36932 * 125.85955 * 153.51606 * 21 18 17 23 23 H 1.08003 * 119.99911 * 0.04075 * 22 21 18 24 24 C 1.38809 * 120.00241 * 180.02562 * 22 21 18 25 25 N 1.31621 * 120.00079 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00296 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47113 * 89.99933 * 26 24 22 28 28 H 1.48497 * 109.47602 * 210.00210 * 26 24 22 29 29 H 1.48504 * 109.47376 * 330.00242 * 26 24 22 30 30 C 1.47081 * 108.28562 * 333.52665 * 21 18 17 31 31 H 1.09002 * 109.47175 * 270.00307 * 1 2 3 32 32 H 1.08997 * 109.47294 * 30.00032 * 1 2 3 33 33 H 1.08999 * 109.47452 * 150.00058 * 1 2 3 34 34 H 0.96704 * 114.00391 * 89.97733 * 5 4 3 35 35 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.57526 * 295.47520 * 14 12 11 37 37 H 1.08993 * 109.57911 * 55.74028 * 14 12 11 38 38 H 1.09002 * 111.24047 * 191.16075 * 17 15 14 39 39 H 1.09006 * 111.23252 * 315.60481 * 17 15 14 40 40 H 1.09004 * 109.53497 * 304.53008 * 20 12 11 41 41 H 1.08999 * 109.53594 * 64.75580 * 20 12 11 42 42 H 0.96993 * 120.00074 * 179.97438 * 25 24 22 43 43 H 1.08995 * 109.98088 * 241.75226 * 30 21 18 44 44 H 1.08999 * 109.97406 * 120.46279 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5532 0.7092 -0.0006 5 8 4.6149 1.5463 -0.0002 6 7 3.6181 -0.6386 0.0052 7 1 4.4242 -1.1781 0.0099 8 6 2.3109 -1.1060 0.0005 9 6 1.8791 -2.5046 0.0006 10 8 0.6922 -2.7751 0.0007 11 7 2.7956 -3.4928 0.0006 12 6 2.3634 -4.8925 -0.0054 13 1 1.4548 -4.9870 -0.6000 14 6 3.4638 -5.7597 -0.6210 15 6 3.0448 -7.2380 -0.5228 16 1 3.6735 -7.8993 -1.1191 17 6 3.0207 -7.5880 0.9914 18 6 1.7340 -6.8400 1.4300 19 1 1.3561 -7.1888 2.3912 20 6 2.0742 -5.3392 1.4289 21 7 0.7796 -7.0803 0.3275 22 6 -0.5855 -7.0847 0.4349 23 1 -1.0526 -6.9004 1.3911 24 6 -1.3691 -7.3259 -0.6853 25 7 -0.8000 -7.5498 -1.8507 26 14 -3.2313 -7.3327 -0.5386 27 1 -3.7516 -5.9622 -0.7764 28 1 -3.8039 -8.2613 -1.5461 29 1 -3.6190 -7.7799 0.8234 30 6 1.5475 -7.3141 -0.9049 31 1 -0.3634 0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 4.9238 1.7895 0.8833 35 1 3.7413 -3.2771 0.0001 36 1 3.6006 -5.4876 -1.6676 37 1 4.3966 -5.6055 -0.0787 38 1 2.9252 -8.6626 1.1468 39 1 3.8997 -7.1941 1.5016 40 1 2.9533 -5.1644 2.0493 41 1 1.2301 -4.7738 1.8236 42 1 -1.3475 -7.7186 -2.6334 43 1 1.3119 -6.5465 -1.6419 44 1 1.3155 -8.3004 -1.3067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047090347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:44 Heat of formation + Delta-G solvation = -12.554958 kcal Electronic energy + Delta-G solvation = -27997.376462 eV Core-core repulsion = 24143.634585 eV Total energy + Delta-G solvation = -3853.741877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.38616 -41.47406 -39.94767 -38.38388 -36.24360 -34.88491 -34.20651 -32.36368 -32.02460 -31.18797 -29.94510 -27.96016 -27.18743 -24.92929 -24.36996 -23.20327 -21.97534 -21.36636 -21.10570 -20.59578 -19.91187 -18.94166 -18.78792 -17.50722 -17.37560 -16.81198 -16.51903 -16.22178 -15.81426 -15.59991 -15.24915 -14.86491 -14.59188 -14.23773 -14.12916 -13.78623 -13.68055 -13.46448 -13.38396 -13.34223 -13.22716 -13.05516 -12.99650 -12.59889 -12.51808 -12.14321 -11.87513 -11.62593 -11.53896 -11.36174 -11.20665 -11.18350 -11.02042 -10.81470 -10.65729 -10.12709 -9.50203 -8.80406 -7.80574 -5.12057 0.04761 1.28715 1.41618 1.46143 1.51677 1.55404 2.06267 2.18883 2.51589 2.78541 3.38502 3.65884 3.69097 3.82259 3.84409 3.94911 4.04937 4.14127 4.37428 4.42666 4.42922 4.53252 4.60695 4.67800 4.76364 4.79759 4.84687 4.87905 4.93931 5.11538 5.20143 5.27840 5.34781 5.36406 5.43025 5.50657 5.53157 5.63579 5.75377 5.80785 5.86874 6.26036 6.42573 6.66319 6.68986 7.17274 7.18750 7.85902 8.49331 9.29416 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.004043 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.696590 B = 6924.288952 C = 8291.203667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.097 3.903 3 N -0.519 5.519 4 C 0.428 3.572 5 O -0.437 6.437 6 N -0.534 5.534 7 H 0.440 0.560 8 C -0.086 4.086 9 C 0.586 3.414 10 O -0.557 6.557 11 N -0.706 5.706 12 C 0.155 3.845 13 H 0.051 0.949 14 C -0.101 4.101 15 C -0.107 4.107 16 H 0.109 0.891 17 C -0.110 4.110 18 C 0.140 3.860 19 H 0.063 0.937 20 C -0.123 4.123 21 N -0.615 5.615 22 C -0.226 4.226 23 H 0.072 0.928 24 C -0.065 4.065 25 N -0.949 5.949 26 Si 0.964 3.036 27 H -0.296 1.296 28 H -0.292 1.292 29 H -0.268 1.268 30 C 0.188 3.812 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.433 0.567 35 H 0.409 0.591 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.022 0.978 42 H 0.242 0.758 43 H 0.004 0.996 44 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.843 12.389 6.880 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.037 4.037 3 N -0.251 5.251 4 C 0.126 3.874 5 O -0.243 6.243 6 N -0.155 5.155 7 H 0.283 0.717 8 C -0.201 4.201 9 C 0.373 3.627 10 O -0.434 6.434 11 N -0.357 5.357 12 C 0.051 3.949 13 H 0.069 0.931 14 C -0.139 4.139 15 C -0.126 4.126 16 H 0.127 0.873 17 C -0.148 4.148 18 C 0.034 3.966 19 H 0.081 0.919 20 C -0.164 4.164 21 N -0.339 5.339 22 C -0.356 4.356 23 H 0.090 0.910 24 C -0.257 4.257 25 N -0.599 5.599 26 Si 0.794 3.206 27 H -0.224 1.224 28 H -0.219 1.219 29 H -0.193 1.193 30 C 0.063 3.937 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.296 0.704 35 H 0.245 0.755 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.041 0.959 42 H 0.051 0.949 43 H 0.022 0.978 44 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 17.601 12.980 6.175 22.725 hybrid contribution -0.537 -0.865 0.054 1.019 sum 17.064 12.116 6.229 21.835 Atomic orbital electron populations 1.20292 0.86288 1.03425 1.03551 1.21071 0.97260 0.86547 0.98821 1.70250 0.99874 1.30544 1.24403 1.20168 0.87447 0.79167 1.00625 1.84824 1.41872 1.60740 1.36823 1.43426 1.08129 1.07670 1.56265 0.71733 1.20516 0.84276 0.94041 1.21280 1.16991 0.85820 0.83348 0.76552 1.90943 1.18027 1.83278 1.51192 1.45806 1.09293 1.05889 1.74704 1.20883 0.98322 0.78565 0.97124 0.93073 1.21913 0.97547 0.93495 1.00969 1.22792 0.95867 0.96432 0.97546 0.87260 1.22944 0.97175 0.99818 0.94911 1.21871 0.90193 0.93019 0.91563 0.91887 1.22430 1.00091 0.97894 0.95963 1.44851 1.00938 1.82846 1.05264 1.19308 0.82223 1.39529 0.94549 0.90995 1.25447 1.01655 1.03073 0.95557 1.70154 1.33931 1.56672 0.99145 0.85276 0.81257 0.76726 0.77371 1.22357 1.21854 1.19304 1.21052 0.88203 0.96628 0.87784 0.89923 0.89700 0.91154 0.70418 0.75489 0.91758 0.87529 0.92029 0.87375 0.89371 0.95864 0.94855 0.97750 0.98119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.24 9.87 71.24 0.70 -1.53 16 2 C 0.10 2.81 7.14 41.99 0.30 3.11 16 3 N -0.52 -13.62 11.22 -301.67 -3.39 -17.00 16 4 C 0.43 8.08 9.43 179.99 1.70 9.78 16 5 O -0.44 -5.00 13.62 -84.82 -1.16 -6.16 16 6 N -0.53 -8.89 6.12 -300.14 -1.84 -10.73 16 7 H 0.44 3.59 8.32 -92.71 -0.77 2.82 16 8 C -0.09 -2.28 7.08 39.80 0.28 -1.99 16 9 C 0.59 19.34 7.73 86.36 0.67 20.01 16 10 O -0.56 -24.88 14.46 -4.45 -0.06 -24.94 16 11 N -0.71 -18.73 5.07 -446.76 -2.26 -21.00 16 12 C 0.16 5.28 2.07 45.00 0.09 5.38 16 13 H 0.05 2.51 5.38 -2.39 -0.01 2.50 16 14 C -0.10 -2.67 4.95 30.93 0.15 -2.51 16 15 C -0.11 -3.41 4.33 -9.05 -0.04 -3.45 16 16 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 17 C -0.11 -3.20 6.18 32.17 0.20 -3.00 16 18 C 0.14 5.39 4.30 45.79 0.20 5.59 16 19 H 0.06 2.42 8.14 -2.38 -0.02 2.41 16 20 C -0.12 -4.22 5.27 30.89 0.16 -4.05 16 21 N -0.61 -31.30 2.43 -664.44 -1.61 -32.91 16 22 C -0.23 -13.24 10.29 84.03 0.87 -12.37 16 23 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 24 C -0.06 -3.88 5.49 84.86 0.47 -3.41 16 25 N -0.95 -59.51 10.35 21.65 0.22 -59.28 16 26 Si 0.96 49.08 29.55 68.60 2.03 51.11 16 27 H -0.30 -15.30 7.11 99.48 0.71 -14.60 16 28 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 29 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 30 C 0.19 9.10 4.10 86.85 0.36 9.46 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 2.39 6.46 -2.39 -0.02 2.37 16 34 H 0.43 -0.05 9.06 -74.05 -0.67 -0.72 16 35 H 0.41 6.59 7.84 -92.71 -0.73 5.86 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 1.78 7.98 -2.39 -0.02 1.76 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.11 2.18 7.75 -2.38 -0.02 2.16 16 40 H 0.09 2.23 8.00 -2.39 -0.02 2.21 16 41 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 43 H 0.00 0.25 6.15 -2.39 -0.01 0.23 16 44 H 0.00 0.03 7.40 -2.39 -0.02 0.01 16 Total: -1.00 -86.09 349.85 -3.06 -89.15 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -1.09 Total: 10.79 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 6.10 Total: 20.99 kcal Atomic # 7 Polarization: -132.05 SS G_CDS: -8.87 Total: -140.92 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.22 Total: -31.10 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.03 Total: 51.11 kcal Total: -86.09 -3.06 -89.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047090347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.592 kcal (2) G-P(sol) polarization free energy of solvation -86.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds