Wall clock time and date at job start Tue Mar 31 2020 13:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35278 * 117.00083 * 2 1 4 4 N 1.32775 * 120.61659 * 0.02663 * 3 2 1 5 5 C 1.31724 * 120.87677 * 179.97438 * 4 3 2 6 6 C 1.50694 * 118.90574 * 179.97438 * 5 4 3 7 7 N 1.31937 * 122.19232 * 0.02562 * 5 4 3 8 8 C 1.32191 * 121.14256 * 359.68617 * 7 5 4 9 9 C 1.39813 * 118.97796 * 0.56421 * 8 7 5 10 10 C 1.47533 * 120.98019 * 179.74722 * 9 8 7 11 11 O 1.21589 * 119.99650 * 225.35236 * 10 9 8 12 12 N 1.34775 * 120.00236 * 45.35463 * 10 9 8 13 13 C 1.47416 * 125.64973 * 175.17958 * 12 10 9 14 14 C 1.54920 * 104.83234 * 204.07723 * 13 12 10 15 15 H 1.09000 * 111.00067 * 81.06167 * 14 13 12 16 16 C 1.52999 * 111.00375 * 204.91122 * 14 13 12 17 17 C 1.55158 * 101.57844 * 322.98974 * 14 13 12 18 18 H 1.09005 * 110.71366 * 277.13529 * 17 14 13 19 19 N 1.46501 * 110.71673 * 154.04157 * 17 14 13 20 20 C 1.36932 * 119.99507 * 154.99845 * 19 17 14 21 21 H 1.08000 * 120.00828 * 0.02562 * 20 19 17 22 22 C 1.38817 * 119.99955 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00340 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99851 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47382 * 89.99816 * 24 22 20 26 26 H 1.48502 * 109.47148 * 210.00187 * 24 22 20 27 27 H 1.48503 * 109.46668 * 329.99672 * 24 22 20 28 28 C 1.47021 * 125.64695 * 355.11465 * 12 10 9 29 29 H 1.08997 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46456 * 299.99896 * 1 2 3 31 31 H 1.08990 * 109.47038 * 59.99543 * 1 2 3 32 32 H 1.09003 * 109.47023 * 89.99304 * 6 5 4 33 33 H 1.08992 * 109.47240 * 209.99896 * 6 5 4 34 34 H 1.08999 * 109.46815 * 330.00187 * 6 5 4 35 35 H 1.07994 * 120.51277 * 180.31203 * 8 7 5 36 36 H 1.09003 * 110.37305 * 85.23833 * 13 12 10 37 37 H 1.08999 * 110.36773 * 322.91500 * 13 12 10 38 38 H 1.09000 * 109.46584 * 172.19356 * 16 14 13 39 39 H 1.08993 * 109.47122 * 292.19821 * 16 14 13 40 40 H 1.09004 * 109.47095 * 52.20107 * 16 14 13 41 41 H 0.96989 * 120.00193 * 334.99709 * 19 17 14 42 42 H 0.97001 * 120.00115 * 179.97438 * 23 22 20 43 43 H 1.08998 * 109.88052 * 59.57460 * 28 12 10 44 44 H 1.09006 * 110.01540 * 298.48661 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0433 1.2053 0.0000 4 7 1.3322 2.3266 0.0005 5 6 1.9249 3.5030 0.0010 6 6 1.0745 4.7471 0.0010 7 7 3.2383 3.6283 0.0005 8 6 4.0263 2.5670 0.0057 9 6 3.4482 1.2940 -0.0003 10 6 4.2858 0.0795 -0.0005 11 8 4.0247 -0.8388 -0.7533 12 7 5.3403 -0.0120 0.8339 13 6 6.1966 -1.1991 1.0093 14 6 6.8051 -1.0433 2.4255 15 1 6.1020 -1.3717 3.1910 16 6 8.1297 -1.8004 2.5395 17 6 7.0323 0.4897 2.4999 18 1 7.9696 0.7645 2.0159 19 7 7.0152 0.9492 3.8909 20 6 7.6749 2.0970 4.2409 21 1 8.2075 2.6637 3.4915 22 6 7.6583 2.5327 5.5588 23 7 8.2927 3.6356 5.8953 24 14 6.7365 1.5529 6.8549 25 1 7.6493 0.5494 7.4589 26 1 6.2423 2.4719 7.9115 27 1 5.5850 0.8587 6.2245 28 6 5.8279 1.0560 1.7188 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.8690 5.0467 1.0287 33 1 1.6044 5.5493 -0.5123 34 1 0.1349 4.5449 -0.5132 35 1 5.1002 2.6814 0.0103 36 1 6.9853 -1.2126 0.2570 37 1 5.5998 -2.1093 0.9508 38 1 8.6029 -1.5631 3.4923 39 1 7.9414 -2.8725 2.4842 40 1 8.7887 -1.5047 1.7230 41 1 6.5366 0.4405 4.5638 42 1 8.2808 3.9403 6.8162 43 1 5.0409 1.3501 2.4133 44 1 6.1410 1.9166 1.1276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054725607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:34 Heat of formation + Delta-G solvation = 1.639571 kcal Electronic energy + Delta-G solvation = -27512.295413 eV Core-core repulsion = 23659.169057 eV Total energy + Delta-G solvation = -3853.126356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.57848 -39.73093 -38.77926 -37.61412 -34.31662 -33.84777 -32.96775 -32.34109 -31.10249 -29.32346 -28.02628 -27.82715 -26.16787 -24.37246 -23.78461 -23.25866 -21.47158 -20.26068 -19.84790 -18.71802 -18.02091 -17.61607 -17.22966 -16.49247 -15.88186 -15.63365 -15.20454 -14.87700 -14.76083 -14.57001 -14.25306 -13.69579 -13.59076 -13.25776 -13.11060 -12.85150 -12.67336 -12.65142 -12.56034 -12.35362 -12.21403 -11.82627 -11.74476 -11.54872 -11.48648 -11.19364 -10.87238 -10.69509 -10.45751 -10.42334 -10.08139 -9.88370 -9.69309 -9.59687 -9.20785 -9.07564 -8.47213 -7.45722 -5.88971 -3.27240 0.43094 0.96202 2.56185 2.74837 3.02231 3.29200 3.32040 3.38279 3.55126 3.64076 3.86918 4.40473 4.48147 4.59418 4.78318 4.95353 4.96408 4.99756 5.02222 5.03596 5.07504 5.29264 5.32298 5.37893 5.39680 5.48297 5.58687 5.64379 5.67296 5.73232 5.81057 6.00500 6.02710 6.07506 6.20146 6.29482 6.38986 6.44993 6.58215 6.68371 6.87445 7.59116 7.83520 7.84652 8.18895 8.29468 9.05574 9.77965 9.95645 11.28511 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011463 B = 0.004318 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.161718 B = 6482.405388 C = 7798.092152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.280 6.280 3 C 0.408 3.592 4 N -0.578 5.578 5 C 0.370 3.630 6 C -0.088 4.088 7 N -0.537 5.537 8 C 0.216 3.784 9 C -0.258 4.258 10 C 0.590 3.410 11 O -0.531 6.531 12 N -0.609 5.609 13 C 0.117 3.883 14 C -0.119 4.119 15 H 0.081 0.919 16 C -0.134 4.134 17 C 0.184 3.816 18 H 0.081 0.919 19 N -0.734 5.734 20 C -0.254 4.254 21 H 0.094 0.906 22 C 0.013 3.987 23 N -0.927 5.927 24 Si 0.881 3.119 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.278 1.278 28 C 0.067 3.933 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.184 0.816 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.364 0.636 42 H 0.261 0.739 43 H 0.071 0.929 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.561 -5.131 -12.149 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.182 6.182 3 C 0.220 3.780 4 N -0.309 5.309 5 C 0.104 3.896 6 C -0.146 4.146 7 N -0.255 5.255 8 C 0.052 3.948 9 C -0.267 4.267 10 C 0.376 3.624 11 O -0.408 6.408 12 N -0.342 5.342 13 C -0.005 4.005 14 C -0.139 4.139 15 H 0.099 0.901 16 C -0.192 4.192 17 C 0.072 3.928 18 H 0.099 0.901 19 N -0.375 5.375 20 C -0.384 4.384 21 H 0.111 0.889 22 C -0.184 4.184 23 N -0.574 5.574 24 Si 0.711 3.289 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.204 1.204 28 C -0.059 4.059 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.201 0.799 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.197 0.803 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.096 -4.918 -12.560 18.800 hybrid contribution -0.479 -1.157 1.169 1.713 sum -13.575 -6.075 -11.391 18.734 Atomic orbital electron populations 1.23027 0.76548 1.03649 1.02752 1.86371 1.23335 1.23182 1.85340 1.19940 0.88014 0.85163 0.84864 1.68012 1.41002 0.98515 1.23376 1.23199 0.88343 0.92085 0.86008 1.20661 0.98180 0.91333 1.04434 1.68350 1.05294 1.33441 1.18444 1.23635 1.01176 0.85263 0.84753 1.20720 0.92253 0.97110 1.16573 1.17151 0.79347 0.85811 0.80065 1.90783 1.70634 1.39679 1.39712 1.48388 1.28904 1.16228 1.40682 1.22284 0.93233 0.88242 0.96784 1.22710 0.97964 0.97511 0.95690 0.90078 1.21617 0.95750 0.98856 1.02964 1.21214 0.95068 0.90142 0.86413 0.90128 1.42716 1.62577 1.29010 1.03234 1.19069 1.25522 0.99112 0.94692 0.88861 1.24660 0.99754 0.97081 0.96920 1.69690 1.46410 1.23146 1.18111 0.86619 0.79994 0.79791 0.82499 1.20855 1.21631 1.20394 1.23455 0.99705 0.89977 0.92738 0.88024 0.91835 0.91816 0.88942 0.88953 0.89522 0.79912 0.91094 0.90730 0.91340 0.93030 0.92424 0.80264 0.92863 0.91056 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.41 101.05 1.05 1.40 16 2 O -0.28 -4.13 9.59 -26.69 -0.26 -4.38 16 3 C 0.41 6.22 7.52 -16.19 -0.12 6.10 16 4 N -0.58 -7.94 9.26 -10.47 -0.10 -8.04 16 5 C 0.37 4.78 7.64 -157.13 -1.20 3.58 16 6 C -0.09 -0.75 10.31 36.00 0.37 -0.38 16 7 N -0.54 -7.62 10.31 -10.44 -0.11 -7.73 16 8 C 0.22 3.08 9.84 -16.81 -0.17 2.91 16 9 C -0.26 -4.02 5.48 -104.56 -0.57 -4.59 16 10 C 0.59 9.89 7.24 -12.47 -0.09 9.80 16 11 O -0.53 -10.22 16.79 -3.87 -0.07 -10.28 16 12 N -0.61 -9.40 3.33 -171.75 -0.57 -9.98 16 13 C 0.12 1.62 6.36 -2.53 -0.02 1.60 16 14 C -0.12 -1.69 3.27 -88.47 -0.29 -1.98 16 15 H 0.08 1.21 8.01 -51.93 -0.42 0.79 16 16 C -0.13 -1.68 9.31 37.16 0.35 -1.34 16 17 C 0.18 3.13 3.08 -66.10 -0.20 2.93 16 18 H 0.08 1.38 7.99 -51.93 -0.41 0.97 16 19 N -0.73 -15.75 4.96 -51.65 -0.26 -16.01 16 20 C -0.25 -6.61 10.44 -15.06 -0.16 -6.77 16 21 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 22 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 23 N -0.93 -27.80 13.97 55.49 0.78 -27.02 16 24 Si 0.88 21.10 27.74 -169.99 -4.71 16.38 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 28 C 0.07 1.07 5.36 -3.07 -0.02 1.06 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 31 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.18 2.30 5.81 -52.49 -0.31 1.99 16 36 H 0.07 0.90 7.98 -51.93 -0.41 0.48 16 37 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 41 H 0.36 7.84 5.62 -40.82 -0.23 7.61 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.07 1.27 8.03 -51.93 -0.42 0.86 16 44 H 0.07 0.98 5.94 -51.93 -0.31 0.67 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -33.03 365.43 -7.26 -40.29 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.32 Total: 6.69 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -1.16 Total: 14.57 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -0.26 Total: -68.77 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.32 Total: -14.67 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.38 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.03 -7.26 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054725607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.930 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds