Wall clock time and date at job start Tue Mar 31 2020 13:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35278 * 117.00083 * 2 1 4 4 N 1.32775 * 120.61659 * 0.02663 * 3 2 1 5 5 C 1.31724 * 120.87677 * 179.97438 * 4 3 2 6 6 C 1.50694 * 118.90574 * 179.97438 * 5 4 3 7 7 N 1.31937 * 122.19232 * 0.02562 * 5 4 3 8 8 C 1.32191 * 121.14256 * 359.68617 * 7 5 4 9 9 C 1.39813 * 118.97796 * 0.56421 * 8 7 5 10 10 C 1.47533 * 120.98019 * 179.74722 * 9 8 7 11 11 O 1.21589 * 119.99650 * 225.35236 * 10 9 8 12 12 N 1.34775 * 120.00236 * 45.35463 * 10 9 8 13 13 C 1.47416 * 125.64973 * 175.17958 * 12 10 9 14 14 C 1.54920 * 104.83234 * 204.07723 * 13 12 10 15 15 H 1.09000 * 111.00067 * 81.06167 * 14 13 12 16 16 C 1.52999 * 111.00375 * 204.91122 * 14 13 12 17 17 C 1.55158 * 101.57844 * 322.98974 * 14 13 12 18 18 H 1.09005 * 110.71366 * 277.13529 * 17 14 13 19 19 N 1.46501 * 110.71673 * 154.04157 * 17 14 13 20 20 C 1.36932 * 119.99507 * 154.99845 * 19 17 14 21 21 H 1.08000 * 120.00828 * 0.02562 * 20 19 17 22 22 C 1.38817 * 119.99955 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00340 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99851 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47382 * 89.99816 * 24 22 20 26 26 H 1.48502 * 109.47148 * 210.00187 * 24 22 20 27 27 H 1.48503 * 109.46668 * 329.99672 * 24 22 20 28 28 C 1.47021 * 125.64695 * 355.11465 * 12 10 9 29 29 H 1.08997 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46456 * 299.99896 * 1 2 3 31 31 H 1.08990 * 109.47038 * 59.99543 * 1 2 3 32 32 H 1.09003 * 109.47023 * 89.99304 * 6 5 4 33 33 H 1.08992 * 109.47240 * 209.99896 * 6 5 4 34 34 H 1.08999 * 109.46815 * 330.00187 * 6 5 4 35 35 H 1.07994 * 120.51277 * 180.31203 * 8 7 5 36 36 H 1.09003 * 110.37305 * 85.23833 * 13 12 10 37 37 H 1.08999 * 110.36773 * 322.91500 * 13 12 10 38 38 H 1.09000 * 109.46584 * 172.19356 * 16 14 13 39 39 H 1.08993 * 109.47122 * 292.19821 * 16 14 13 40 40 H 1.09004 * 109.47095 * 52.20107 * 16 14 13 41 41 H 0.96989 * 120.00193 * 334.99709 * 19 17 14 42 42 H 0.97001 * 120.00115 * 179.97438 * 23 22 20 43 43 H 1.08998 * 109.88052 * 59.57460 * 28 12 10 44 44 H 1.09006 * 110.01540 * 298.48661 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0433 1.2053 0.0000 4 7 1.3322 2.3266 0.0005 5 6 1.9249 3.5030 0.0010 6 6 1.0745 4.7471 0.0010 7 7 3.2383 3.6283 0.0005 8 6 4.0263 2.5670 0.0057 9 6 3.4482 1.2940 -0.0003 10 6 4.2858 0.0795 -0.0005 11 8 4.0247 -0.8388 -0.7533 12 7 5.3403 -0.0120 0.8339 13 6 6.1966 -1.1991 1.0093 14 6 6.8051 -1.0433 2.4255 15 1 6.1020 -1.3717 3.1910 16 6 8.1297 -1.8004 2.5395 17 6 7.0323 0.4897 2.4999 18 1 7.9696 0.7645 2.0159 19 7 7.0152 0.9492 3.8909 20 6 7.6749 2.0970 4.2409 21 1 8.2075 2.6637 3.4915 22 6 7.6583 2.5327 5.5588 23 7 8.2927 3.6356 5.8953 24 14 6.7365 1.5529 6.8549 25 1 7.6493 0.5494 7.4589 26 1 6.2423 2.4719 7.9115 27 1 5.5850 0.8587 6.2245 28 6 5.8279 1.0560 1.7188 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.8690 5.0467 1.0287 33 1 1.6044 5.5493 -0.5123 34 1 0.1349 4.5449 -0.5132 35 1 5.1002 2.6814 0.0103 36 1 6.9853 -1.2126 0.2570 37 1 5.5998 -2.1093 0.9508 38 1 8.6029 -1.5631 3.4923 39 1 7.9414 -2.8725 2.4842 40 1 8.7887 -1.5047 1.7230 41 1 6.5366 0.4405 4.5638 42 1 8.2808 3.9403 6.8162 43 1 5.0409 1.3501 2.4133 44 1 6.1410 1.9166 1.1276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054725607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:33 Heat of formation + Delta-G solvation = -22.147077 kcal Electronic energy + Delta-G solvation = -27513.326879 eV Core-core repulsion = 23659.169057 eV Total energy + Delta-G solvation = -3854.157822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.65691 -40.99492 -39.80749 -38.97011 -35.99815 -34.99479 -34.10084 -33.63593 -32.82577 -30.22995 -29.53833 -28.72729 -27.22670 -25.83261 -25.04677 -24.42051 -22.88809 -21.64365 -21.07614 -19.74165 -19.53258 -19.06537 -18.48983 -17.53777 -17.18545 -16.98120 -16.36228 -16.24145 -15.86318 -15.69302 -15.64165 -15.11906 -14.88934 -14.69925 -14.30675 -14.24132 -13.90258 -13.63784 -13.51534 -13.30753 -13.19106 -13.11035 -12.96241 -12.89094 -12.73084 -12.60634 -12.28071 -12.15963 -11.93270 -11.80101 -11.49245 -11.43715 -11.17040 -10.95922 -10.69015 -10.30614 -9.74947 -9.36605 -8.00717 -5.35540 -0.65020 -0.13552 1.39119 1.39631 1.40742 1.47324 1.67227 1.80561 2.46470 2.48656 2.69304 2.86543 3.16473 3.29433 3.50253 3.60286 3.63479 3.79451 3.87595 4.08602 4.12124 4.27957 4.28727 4.29110 4.38782 4.56132 4.59158 4.65768 4.68108 4.69248 4.81417 4.86937 4.89032 5.04500 5.10900 5.16947 5.21223 5.30297 5.49204 5.53013 5.79521 5.86038 6.22548 6.30957 6.78286 6.90963 7.07451 7.81572 7.99367 9.20019 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011463 B = 0.004318 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.161718 B = 6482.405388 C = 7798.092152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.301 6.301 3 C 0.399 3.601 4 N -0.576 5.576 5 C 0.364 3.636 6 C -0.086 4.086 7 N -0.551 5.551 8 C 0.219 3.781 9 C -0.282 4.282 10 C 0.592 3.408 11 O -0.560 6.560 12 N -0.605 5.605 13 C 0.118 3.882 14 C -0.107 4.107 15 H 0.078 0.922 16 C -0.130 4.130 17 C 0.176 3.824 18 H 0.082 0.918 19 N -0.737 5.737 20 C -0.228 4.228 21 H 0.068 0.932 22 C -0.054 4.054 23 N -0.979 5.979 24 Si 0.943 3.057 25 H -0.277 1.277 26 H -0.301 1.301 27 H -0.257 1.257 28 C 0.079 3.921 29 H 0.126 0.874 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.194 0.806 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.366 0.634 42 H 0.257 0.743 43 H 0.054 0.946 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.900 -6.298 -12.732 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.203 6.203 3 C 0.211 3.789 4 N -0.308 5.308 5 C 0.099 3.901 6 C -0.143 4.143 7 N -0.270 5.270 8 C 0.054 3.946 9 C -0.290 4.290 10 C 0.380 3.620 11 O -0.439 6.439 12 N -0.338 5.338 13 C -0.004 4.004 14 C -0.127 4.127 15 H 0.096 0.904 16 C -0.188 4.188 17 C 0.066 3.934 18 H 0.100 0.900 19 N -0.378 5.378 20 C -0.359 4.359 21 H 0.086 0.914 22 C -0.246 4.246 23 N -0.629 5.629 24 Si 0.772 3.228 25 H -0.203 1.203 26 H -0.228 1.228 27 H -0.182 1.182 28 C -0.047 4.047 29 H 0.144 0.856 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.211 0.789 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.199 0.801 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.462 -6.132 -13.184 20.508 hybrid contribution -0.105 -0.781 1.228 1.459 sum -14.567 -6.913 -11.956 20.073 Atomic orbital electron populations 1.23319 0.74351 1.05479 1.03288 1.86346 1.25654 1.23224 1.85101 1.20149 0.88199 0.85812 0.84713 1.68134 1.40631 0.98385 1.23670 1.24085 0.88480 0.93170 0.84322 1.20849 0.98320 0.89611 1.05556 1.68442 1.06032 1.33296 1.19220 1.23805 1.01771 0.85013 0.84035 1.20735 0.92627 0.97046 1.18626 1.17281 0.79294 0.85807 0.79612 1.90757 1.71379 1.40847 1.40926 1.48375 1.28830 1.16510 1.40057 1.22409 0.93437 0.87770 0.96804 1.22628 0.98968 0.95147 0.95921 0.90375 1.21599 0.94613 1.00083 1.02488 1.21418 0.95420 0.92374 0.84223 0.90033 1.42668 1.62183 1.27773 1.05208 1.19044 1.23617 0.99429 0.93829 0.91394 1.25358 1.01618 0.98358 0.99269 1.69855 1.49201 1.25541 1.18272 0.85590 0.79389 0.78264 0.79576 1.20318 1.22796 1.18212 1.23159 0.98493 0.90434 0.92615 0.85628 0.91381 0.91125 0.87715 0.87786 0.87719 0.78941 0.89351 0.90287 0.92935 0.90708 0.91366 0.80064 0.93409 0.92746 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.41 113.37 1.18 1.72 16 2 O -0.30 -8.66 9.59 -76.88 -0.74 -9.39 16 3 C 0.40 11.94 7.52 85.17 0.64 12.58 16 4 N -0.58 -15.18 9.26 -299.86 -2.78 -17.96 16 5 C 0.36 8.92 7.64 138.73 1.06 9.98 16 6 C -0.09 -1.27 10.31 71.23 0.73 -0.54 16 7 N -0.55 -15.13 10.31 -186.94 -1.93 -17.06 16 8 C 0.22 6.11 9.84 85.02 0.84 6.94 16 9 C -0.28 -8.66 5.48 -19.83 -0.11 -8.77 16 10 C 0.59 19.48 7.24 86.69 0.63 20.11 16 11 O -0.56 -21.24 16.79 4.76 0.08 -21.16 16 12 N -0.61 -17.93 3.33 -815.55 -2.71 -20.64 16 13 C 0.12 2.99 6.36 86.86 0.55 3.54 16 14 C -0.11 -2.81 3.27 -9.40 -0.03 -2.84 16 15 H 0.08 2.14 8.01 -2.39 -0.02 2.12 16 16 C -0.13 -2.93 9.31 71.98 0.67 -2.26 16 17 C 0.18 5.76 3.08 46.18 0.14 5.90 16 18 H 0.08 2.69 7.99 -2.38 -0.02 2.68 16 19 N -0.74 -30.84 4.96 -317.32 -1.57 -32.42 16 20 C -0.23 -11.90 10.44 84.04 0.88 -11.02 16 21 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 22 C -0.05 -3.00 5.50 84.86 0.47 -2.54 16 23 N -0.98 -60.05 13.97 21.65 0.30 -59.74 16 24 Si 0.94 43.52 27.74 68.60 1.90 45.42 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 27 H -0.26 -10.82 6.52 99.48 0.65 -10.17 16 28 C 0.08 2.44 5.36 86.73 0.46 2.90 16 29 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 31 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 32 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.19 4.73 5.81 -2.91 -0.02 4.71 16 36 H 0.09 1.98 7.98 -2.39 -0.02 1.96 16 37 H 0.08 2.00 8.09 -2.39 -0.02 1.98 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 1.39 8.07 -2.39 -0.02 1.37 16 41 H 0.37 15.11 5.62 -92.72 -0.52 14.58 16 42 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.05 1.90 8.03 -2.39 -0.02 1.88 16 44 H 0.08 2.21 5.94 -2.38 -0.01 2.20 16 Total: -1.00 -71.72 365.43 1.11 -70.60 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.45 Total: 26.62 kcal Atomic # 6 Polarization: 27.62 SS G_CDS: 8.11 Total: 35.73 kcal Atomic # 7 Polarization: -139.13 SS G_CDS: -8.69 Total: -147.82 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.66 Total: -30.55 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.90 Total: 45.42 kcal Total: -71.72 1.11 -70.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054725607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.455 kcal (2) G-P(sol) polarization free energy of solvation -71.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds