Wall clock time and date at job start Tue Mar 31 2020 13:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31885 * 119.92693 * 2 1 4 4 N 1.28279 * 122.61838 * 180.02562 * 3 2 1 5 5 C 1.32487 * 122.22090 * 359.97438 * 4 3 2 6 6 O 1.35440 * 120.25140 * 179.97438 * 5 4 3 7 7 C 1.40446 * 119.49223 * 0.02562 * 5 4 3 8 8 C 1.47830 * 121.17502 * 179.97438 * 7 5 4 9 9 O 1.21550 * 119.99919 * 90.00341 * 8 7 5 10 10 N 1.34779 * 119.99890 * 270.00220 * 8 7 5 11 11 C 1.47421 * 125.64852 * 359.96974 * 10 8 7 12 12 C 1.54917 * 104.83002 * 155.91133 * 11 10 8 13 13 H 1.09004 * 111.00194 * 278.93638 * 12 11 10 14 14 N 1.46491 * 111.00301 * 155.08900 * 12 11 10 15 15 C 1.36941 * 120.00145 * 86.45327 * 14 12 11 16 16 H 1.07995 * 120.00285 * 359.97438 * 15 14 12 17 17 C 1.38818 * 119.99647 * 179.97438 * 15 14 12 18 18 N 1.31614 * 120.00208 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99500 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47327 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47000 * 120.00207 * 19 17 15 22 22 H 1.48497 * 109.47126 * 240.00186 * 19 17 15 23 23 C 1.55151 * 101.58025 * 37.01304 * 12 11 10 24 24 H 1.09000 * 110.72429 * 82.86540 * 23 12 11 25 25 C 1.52999 * 110.71783 * 206.13747 * 23 12 11 26 26 C 1.47021 * 125.64696 * 180.02562 * 10 8 7 27 27 C 1.38479 * 119.93582 * 180.27770 * 2 1 3 28 28 C 1.50701 * 121.05415 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.47142 * 90.00350 * 1 2 3 30 30 H 1.09002 * 109.46827 * 210.00419 * 1 2 3 31 31 H 1.09001 * 109.47096 * 329.99778 * 1 2 3 32 32 H 0.96706 * 114.00119 * 270.01882 * 6 5 4 33 33 H 1.09002 * 110.36865 * 37.07626 * 11 10 8 34 34 H 1.08994 * 110.46657 * 274.79775 * 11 10 8 35 35 H 0.97001 * 120.00236 * 266.45250 * 14 12 11 36 36 H 0.97001 * 119.99606 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.47698 * 59.99615 * 25 23 12 38 38 H 1.09001 * 109.47548 * 180.02562 * 25 23 12 39 39 H 1.09000 * 109.47333 * 299.99836 * 25 23 12 40 40 H 1.08996 * 109.88310 * 300.43775 * 26 10 8 41 41 H 1.09002 * 109.88672 * 61.44815 * 26 10 8 42 42 H 1.09007 * 109.47007 * 270.21772 * 28 27 2 43 43 H 1.08994 * 109.47586 * 30.22028 * 28 27 2 44 44 H 1.09003 * 109.46878 * 150.22159 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1650 1.1430 0.0000 4 7 3.4464 1.2032 -0.0005 5 6 4.2047 0.1168 -0.0005 6 8 5.5546 0.2269 -0.0016 7 6 3.5979 -1.1498 -0.0006 8 6 4.4080 -2.3864 -0.0012 9 8 4.7414 -2.8950 1.0512 10 7 4.7769 -2.9498 -1.1687 11 6 4.4427 -2.4413 -2.5115 12 6 5.5466 -3.0109 -3.4372 13 1 6.4545 -2.4104 -3.3777 14 7 5.0736 -3.1081 -4.8202 15 6 5.1771 -2.0289 -5.6568 16 1 5.6072 -1.1059 -5.2968 17 6 4.7293 -2.1213 -6.9675 18 7 4.2048 -3.2459 -7.4060 19 14 4.8700 -0.6489 -8.1084 20 1 5.4901 0.4857 -7.3782 21 1 5.7149 -1.0064 -9.2761 22 1 3.5172 -0.2556 -8.5781 23 6 5.7701 -4.4191 -2.8255 24 1 5.0276 -5.1242 -3.1991 25 6 7.1869 -4.9174 -3.1174 26 6 5.5781 -4.1739 -1.3140 27 6 2.1981 -1.2000 -0.0058 28 6 1.4673 -2.5179 -0.0128 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 5.9460 0.2587 -0.8853 33 1 4.4648 -1.3516 -2.5208 34 1 3.4628 -2.8028 -2.8229 35 1 4.6870 -3.9369 -5.1434 36 1 3.8915 -3.3103 -8.3217 37 1 7.9112 -4.2269 -2.6853 38 1 7.3216 -5.9066 -2.6798 39 1 7.3373 -4.9739 -4.1954 40 1 6.5476 -4.0415 -0.8338 41 1 5.0534 -5.0162 -0.8631 42 1 1.2872 -2.8390 1.0133 43 1 0.5147 -2.4025 -0.5298 44 1 2.0714 -3.2657 -0.5268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054959165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:41 Heat of formation + Delta-G solvation = -5.335412 kcal Electronic energy + Delta-G solvation = -27893.280212 eV Core-core repulsion = 24039.851398 eV Total energy + Delta-G solvation = -3853.428814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.65033 -39.84295 -37.97185 -37.71001 -35.10076 -34.25266 -33.07550 -32.32484 -30.86925 -28.96940 -28.19959 -27.72530 -26.66446 -24.48679 -23.87468 -22.84588 -21.68170 -20.15347 -19.67839 -19.08254 -18.24576 -17.33537 -17.26592 -16.44796 -15.95886 -15.64749 -15.00187 -14.61044 -14.49584 -14.09791 -13.77358 -13.65664 -13.36229 -13.30882 -13.23265 -13.13674 -12.93809 -12.89949 -12.76037 -12.39498 -12.24745 -12.09380 -11.83552 -11.35085 -11.25020 -11.17039 -10.91079 -10.76210 -10.49541 -10.35124 -10.09995 -10.00940 -9.89009 -9.59309 -9.52361 -9.16621 -8.63234 -7.23615 -5.98057 -3.29767 0.32583 0.53815 2.33942 2.79564 3.01644 3.28846 3.31043 3.38148 3.39498 3.88114 4.09242 4.17138 4.40743 4.46795 4.62618 4.80798 4.92996 4.98104 5.05260 5.13171 5.20505 5.28481 5.37852 5.42517 5.47404 5.49515 5.55156 5.60488 5.66292 5.70050 5.76140 5.85636 5.93898 6.02914 6.07102 6.14858 6.27574 6.29180 6.47045 6.68334 7.11397 7.42300 7.51286 7.96181 8.18981 8.45433 9.31717 9.83197 10.18045 11.23573 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.004642 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.490320 B = 6029.890815 C = 7298.046664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.060 3.940 3 N -0.207 5.207 4 N -0.253 5.253 5 C 0.288 3.712 6 O -0.467 6.467 7 C -0.133 4.133 8 C 0.585 3.415 9 O -0.529 6.529 10 N -0.603 5.603 11 C 0.071 3.929 12 C 0.179 3.821 13 H 0.067 0.933 14 N -0.709 5.709 15 C -0.252 4.252 16 H 0.072 0.928 17 C -0.004 4.004 18 N -0.927 5.927 19 Si 0.906 3.094 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.290 1.290 23 C -0.112 4.112 24 H 0.086 0.914 25 C -0.135 4.135 26 C 0.116 3.884 27 C -0.031 4.031 28 C -0.123 4.123 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.409 0.591 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.388 0.612 36 H 0.258 0.742 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.153 -0.559 12.983 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.085 4.085 3 N -0.052 5.052 4 N -0.105 5.105 5 C 0.102 3.898 6 O -0.273 6.273 7 C -0.148 4.148 8 C 0.370 3.630 9 O -0.405 6.405 10 N -0.336 5.336 11 C -0.055 4.055 12 C 0.066 3.934 13 H 0.085 0.915 14 N -0.348 5.348 15 C -0.383 4.383 16 H 0.090 0.910 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.737 3.263 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.217 1.217 23 C -0.132 4.132 24 H 0.105 0.895 25 C -0.192 4.192 26 C -0.006 4.006 27 C -0.043 4.043 28 C -0.180 4.180 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.269 0.731 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.223 0.777 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.941 0.961 14.067 14.640 hybrid contribution 0.148 -0.859 -1.327 1.588 sum -3.793 0.102 12.740 13.293 Atomic orbital electron populations 1.20731 0.86690 1.04313 1.04142 1.22764 0.99401 0.89212 0.97123 1.72825 1.00131 1.24321 1.07948 1.73030 0.99540 1.26303 1.11588 1.20786 0.86288 0.88123 0.94639 1.84721 1.12961 1.95187 1.34438 1.21255 0.94658 0.95344 1.03562 1.17283 0.79611 0.82872 0.83216 1.90812 1.55783 1.63221 1.30700 1.48498 1.52074 1.27061 1.05919 1.23626 1.02312 0.98998 0.80599 1.21343 0.93889 0.92797 0.85354 0.91520 1.42296 1.72786 1.14747 1.05013 1.19240 1.34966 0.92109 0.92004 0.90997 1.24759 1.00814 0.97216 0.97337 1.69658 1.45978 1.24949 1.16780 0.86148 0.77397 0.81807 0.80988 1.20412 1.21613 1.21670 1.22490 0.98964 0.99050 0.92685 0.89522 1.21672 0.94608 1.00122 1.02847 1.22075 0.95359 0.86084 0.97082 1.21068 0.91520 0.97963 0.93711 1.20974 1.00960 0.92073 1.03966 0.89288 0.89881 0.89582 0.73091 0.92112 0.90799 0.77745 0.93256 0.92762 0.93022 0.91205 0.91120 0.91530 0.89143 0.89202 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.42 36.01 0.34 -0.45 16 2 C 0.06 0.73 6.86 -82.48 -0.57 0.17 16 3 N -0.21 -3.08 11.40 33.56 0.38 -2.70 16 4 N -0.25 -4.08 11.52 30.73 0.35 -3.73 16 5 C 0.29 4.42 7.88 -16.44 -0.13 4.29 16 6 O -0.47 -6.57 13.09 -18.01 -0.24 -6.80 16 7 C -0.13 -1.97 4.58 -104.45 -0.48 -2.45 16 8 C 0.58 9.22 5.65 -12.33 -0.07 9.15 16 9 O -0.53 -9.84 17.43 5.32 0.09 -9.75 16 10 N -0.60 -8.75 3.33 -171.64 -0.57 -9.32 16 11 C 0.07 1.10 6.38 -2.53 -0.02 1.08 16 12 C 0.18 3.02 3.13 -65.79 -0.21 2.81 16 13 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 14 N -0.71 -15.42 5.28 -51.35 -0.27 -15.69 16 15 C -0.25 -6.29 9.98 -15.05 -0.15 -6.44 16 16 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 17 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 18 N -0.93 -25.85 13.06 55.49 0.72 -25.13 16 19 Si 0.91 20.99 29.55 -169.99 -5.02 15.97 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.11 -1.56 3.17 -88.79 -0.28 -1.84 16 24 H 0.09 1.24 8.00 -51.93 -0.42 0.82 16 25 C -0.13 -1.71 9.16 37.16 0.34 -1.37 16 26 C 0.12 1.55 6.46 -3.06 -0.02 1.53 16 27 C -0.03 -0.39 5.96 -103.85 -0.62 -1.01 16 28 C -0.12 -1.18 8.92 36.01 0.32 -0.86 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.47 6.80 -51.93 -0.35 0.12 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.41 4.06 9.06 45.56 0.41 4.47 16 33 H 0.06 0.96 7.69 -51.93 -0.40 0.56 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.39 9.06 7.71 -40.82 -0.31 8.74 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.05 0.65 8.06 -51.93 -0.42 0.23 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.93 7.76 -51.93 -0.40 0.52 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 43 H 0.09 0.65 6.83 -51.93 -0.35 0.29 16 44 H 0.08 0.86 7.25 -51.93 -0.38 0.49 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -32.04 369.36 -6.16 -38.20 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.54 Total: 8.98 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -1.63 Total: 4.40 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.62 Total: -56.56 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.14 Total: -16.55 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.04 -6.16 -38.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054959165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.862 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds