Wall clock time and date at job start Tue Mar 31 2020 13:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35278 * 116.99992 * 2 1 4 4 N 1.32782 * 120.61426 * 0.02562 * 3 2 1 5 5 C 1.31723 * 120.87293 * 179.97438 * 4 3 2 6 6 C 1.50700 * 118.90115 * 180.02562 * 5 4 3 7 7 N 1.31942 * 122.19500 * 359.97438 * 5 4 3 8 8 C 1.32191 * 121.13939 * 0.02562 * 7 5 4 9 9 C 1.39801 * 118.98212 * 359.97438 * 8 7 5 10 10 C 1.47538 * 120.97721 * 179.97438 * 9 8 7 11 11 O 1.21586 * 119.99533 * 146.94912 * 10 9 8 12 12 N 1.34773 * 120.00054 * 326.94771 * 10 9 8 13 13 C 1.46497 * 120.00110 * 4.84101 * 12 10 9 14 14 C 1.46499 * 119.99986 * 184.84417 * 12 10 9 15 15 C 1.53007 * 109.47047 * 84.64363 * 14 12 10 16 16 H 1.08991 * 112.96970 * 294.16284 * 15 14 12 17 17 C 1.53952 * 113.76602 * 65.84309 * 15 14 12 18 18 C 1.53952 * 86.28704 * 137.90499 * 17 15 14 19 19 N 1.47588 * 113.76594 * 162.48253 * 15 14 12 20 20 C 1.36936 * 134.49293 * 41.07395 * 19 15 14 21 21 H 1.08004 * 119.99741 * 4.72829 * 20 19 15 22 22 C 1.38809 * 119.99695 * 184.73129 * 20 19 15 23 23 N 1.31612 * 120.00572 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99727 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47231 * 89.99873 * 24 22 20 26 26 H 1.48503 * 109.47239 * 209.99901 * 24 22 20 27 27 H 1.48503 * 109.46959 * 329.99826 * 24 22 20 28 28 H 1.08999 * 109.46566 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47089 * 299.99722 * 1 2 3 30 30 H 1.09002 * 109.46824 * 60.00206 * 1 2 3 31 31 H 1.08995 * 109.47119 * 269.97956 * 6 5 4 32 32 H 1.09000 * 109.46748 * 29.97865 * 6 5 4 33 33 H 1.09003 * 109.46716 * 149.97461 * 6 5 4 34 34 H 1.07999 * 120.50453 * 179.72331 * 8 7 5 35 35 H 1.09007 * 109.46591 * 95.77047 * 13 12 10 36 36 H 1.09004 * 109.47562 * 215.77109 * 13 12 10 37 37 H 1.09003 * 109.47161 * 335.77532 * 13 12 10 38 38 H 1.08996 * 109.47310 * 204.64548 * 14 12 10 39 39 H 1.09005 * 109.47234 * 324.64886 * 14 12 10 40 40 H 1.08995 * 113.73943 * 252.25207 * 17 15 14 41 41 H 1.08999 * 113.73926 * 23.45755 * 17 15 14 42 42 H 1.08993 * 113.76717 * 90.69435 * 18 17 15 43 43 H 1.09001 * 113.76616 * 221.98053 * 18 17 15 44 44 H 0.96993 * 120.00551 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 7 1.3320 2.3266 0.0005 5 6 1.9247 3.5030 0.0010 6 6 1.0742 4.7471 0.0022 7 7 3.2381 3.6284 0.0015 8 6 4.0262 2.5670 0.0011 9 6 3.4481 1.2941 0.0006 10 6 4.2858 0.0797 -0.0005 11 8 3.9047 -0.9222 0.5733 12 7 5.4735 0.0808 -0.6376 13 6 5.9814 1.3168 -1.2381 14 6 6.2565 -1.1539 -0.7297 15 6 5.7728 -1.9765 -1.9257 16 1 4.7526 -2.3411 -1.8065 17 6 6.0375 -1.3075 -3.2867 18 6 6.4574 -2.7044 -3.7790 19 7 6.7285 -3.0143 -2.3594 20 6 7.5396 -3.9045 -1.7077 21 1 7.4990 -3.9842 -0.6314 22 6 8.4141 -4.7043 -2.4305 23 7 8.4633 -4.6074 -3.7421 24 14 9.5211 -5.9182 -1.5415 25 1 8.8241 -7.2235 -1.4156 26 1 10.7768 -6.1000 -2.3131 27 1 9.8425 -5.3962 -0.1889 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.8691 5.0478 -1.0252 32 1 0.1345 4.5442 0.5160 33 1 1.6040 5.5488 0.5167 34 1 5.1001 2.6816 -0.0030 35 1 6.6623 1.8060 -0.5414 36 1 6.5126 1.0812 -2.1603 37 1 5.1473 1.9829 -1.4591 38 1 7.3100 -0.9071 -0.8608 39 1 6.1301 -1.7334 0.1848 40 1 5.1387 -0.9239 -3.7694 41 1 6.8522 -0.5835 -3.2687 42 1 5.6388 -3.2845 -4.2049 43 1 7.3474 -2.6993 -4.4082 44 1 9.0741 -5.1666 -4.2472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085631869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:21 Heat of formation + Delta-G solvation = 60.724031 kcal Electronic energy + Delta-G solvation = -27385.468408 eV Core-core repulsion = 23534.904147 eV Total energy + Delta-G solvation = -3850.564261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.74574 -39.54985 -38.83390 -37.71608 -35.38232 -33.84277 -32.97986 -32.09586 -29.73538 -28.61473 -27.83852 -27.45985 -26.53653 -24.05610 -23.69611 -23.29455 -22.31076 -19.92458 -19.02320 -18.73919 -18.15572 -17.27046 -16.64003 -16.55341 -15.72224 -15.44146 -15.36649 -14.90919 -14.78002 -14.64886 -14.21272 -13.81355 -13.65230 -13.50496 -13.00119 -12.88405 -12.79101 -12.39574 -12.38283 -12.22327 -12.03997 -11.73446 -11.60387 -11.39066 -11.02602 -10.85646 -10.66803 -10.48150 -10.44982 -9.86451 -9.77641 -9.71705 -9.67103 -9.51800 -9.24844 -8.73666 -8.36216 -6.82612 -5.71434 -3.04786 0.28455 0.82938 2.57000 2.80294 3.03798 3.42292 3.47097 3.47589 3.48889 3.53009 3.71260 4.34567 4.49386 4.50744 4.78805 4.85584 4.99685 5.02373 5.04195 5.15679 5.20364 5.22106 5.29519 5.35979 5.46815 5.49544 5.57976 5.65926 5.83595 5.88069 5.99200 6.20190 6.30085 6.44519 6.47062 6.60426 6.73741 6.83769 6.84977 7.29050 7.45819 7.52957 7.63534 7.69838 8.03739 8.28885 9.09468 9.75970 10.65741 11.44832 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.003005 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.654081 B = 9315.839585 C = 9656.384646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.270 6.270 3 C 0.412 3.588 4 N -0.578 5.578 5 C 0.369 3.631 6 C -0.088 4.088 7 N -0.545 5.545 8 C 0.199 3.801 9 C -0.261 4.261 10 C 0.567 3.433 11 O -0.514 6.514 12 N -0.600 5.600 13 C 0.059 3.941 14 C 0.121 3.879 15 C 0.130 3.870 16 H 0.047 0.953 17 C -0.158 4.158 18 C 0.156 3.844 19 N -0.601 5.601 20 C -0.220 4.220 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.280 1.280 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.192 0.808 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.022 0.978 43 H 0.078 0.922 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.545 20.398 5.281 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.171 6.171 3 C 0.225 3.775 4 N -0.310 5.310 5 C 0.103 3.897 6 C -0.146 4.146 7 N -0.265 5.265 8 C 0.035 3.965 9 C -0.270 4.270 10 C 0.353 3.647 11 O -0.390 6.390 12 N -0.334 5.334 13 C -0.085 4.085 14 C -0.002 4.002 15 C 0.022 3.978 16 H 0.065 0.935 17 C -0.196 4.196 18 C 0.031 3.969 19 N -0.328 5.328 20 C -0.348 4.348 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.206 1.206 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.209 0.791 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.040 0.960 43 H 0.096 0.904 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.972 20.019 5.609 25.049 hybrid contribution 0.779 -1.552 0.307 1.763 sum -13.193 18.467 5.916 23.455 Atomic orbital electron populations 1.23061 0.76561 1.03920 1.02572 1.86474 1.23233 1.22732 1.84632 1.20045 0.88223 0.85175 0.84094 1.68051 1.41071 0.98506 1.23392 1.23183 0.88334 0.92149 0.86043 1.20654 0.98333 0.91334 1.04271 1.68364 1.05378 1.33450 1.19291 1.24044 1.01492 0.85543 0.85438 1.20895 0.92485 0.97292 1.16375 1.17549 0.80964 0.86608 0.79567 1.90835 1.71066 1.33800 1.43260 1.47675 1.19750 1.11181 1.54756 1.22430 0.99673 0.86821 0.99542 1.21826 0.94535 0.83408 1.00452 1.22528 0.93897 0.89108 0.92241 0.93537 1.23760 0.99359 0.98916 0.97603 1.22296 0.98109 0.88265 0.88237 1.46062 1.44638 1.39969 1.02127 1.19033 1.11865 1.12997 0.90896 0.90371 1.24760 0.99796 1.00235 0.95613 1.69814 1.40176 1.42340 1.04532 0.86151 0.80038 0.81256 0.78517 1.21701 1.21694 1.20586 0.87815 0.91856 0.91870 0.89082 0.89457 0.89063 0.79141 0.91824 0.89942 0.90696 0.89481 0.90360 0.93546 0.90896 0.96002 0.90400 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.41 101.05 1.05 1.39 16 2 O -0.27 -3.97 9.23 -34.44 -0.32 -4.28 16 3 C 0.41 5.79 7.51 -16.18 -0.12 5.67 16 4 N -0.58 -6.95 9.26 -10.47 -0.10 -7.05 16 5 C 0.37 3.84 7.64 -157.13 -1.20 2.64 16 6 C -0.09 -0.54 10.31 36.01 0.37 -0.17 16 7 N -0.55 -5.88 10.31 -10.44 -0.11 -5.99 16 8 C 0.20 2.15 8.73 -16.81 -0.15 2.00 16 9 C -0.26 -3.61 5.48 -104.56 -0.57 -4.18 16 10 C 0.57 9.38 7.31 -12.47 -0.09 9.28 16 11 O -0.51 -10.59 15.63 -11.62 -0.18 -10.77 16 12 N -0.60 -8.96 2.78 -182.80 -0.51 -9.46 16 13 C 0.06 0.60 8.67 59.85 0.52 1.12 16 14 C 0.12 2.21 5.33 -4.04 -0.02 2.19 16 15 C 0.13 2.77 4.53 -66.85 -0.30 2.47 16 16 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 17 C -0.16 -3.02 7.18 -25.79 -0.19 -3.20 16 18 C 0.16 3.75 7.64 -2.84 -0.02 3.73 16 19 N -0.60 -15.59 3.58 -169.68 -0.61 -16.20 16 20 C -0.22 -6.23 10.51 -15.06 -0.16 -6.39 16 21 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -27.51 11.32 55.49 0.63 -26.89 16 24 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.57 8.12 -51.93 -0.42 0.14 16 30 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.19 1.53 5.05 -52.49 -0.26 1.27 16 35 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 36 H 0.08 0.85 6.44 -51.93 -0.33 0.52 16 37 H 0.07 0.68 4.63 -51.93 -0.24 0.44 16 38 H 0.09 1.56 8.03 -51.93 -0.42 1.15 16 39 H 0.08 1.59 7.52 -51.93 -0.39 1.20 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.28 6.90 -51.93 -0.36 0.92 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 2.04 6.98 -51.93 -0.36 1.67 16 44 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -35.62 362.20 -7.84 -43.47 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.11 Total: -1.95 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: -0.98 Total: 16.23 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -0.69 Total: -65.58 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.50 Total: -15.05 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.62 -7.84 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085631869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.191 kcal (2) G-P(sol) polarization free energy of solvation -35.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds