Wall clock time and date at job start Tue Mar 31 2020 13:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35278 * 116.99992 * 2 1 4 4 N 1.32782 * 120.61426 * 0.02562 * 3 2 1 5 5 C 1.31723 * 120.87293 * 179.97438 * 4 3 2 6 6 C 1.50700 * 118.90115 * 180.02562 * 5 4 3 7 7 N 1.31942 * 122.19500 * 359.97438 * 5 4 3 8 8 C 1.32191 * 121.13939 * 0.02562 * 7 5 4 9 9 C 1.39801 * 118.98212 * 359.97438 * 8 7 5 10 10 C 1.47538 * 120.97721 * 179.97438 * 9 8 7 11 11 O 1.21586 * 119.99533 * 146.94912 * 10 9 8 12 12 N 1.34773 * 120.00054 * 326.94771 * 10 9 8 13 13 C 1.46497 * 120.00110 * 4.84101 * 12 10 9 14 14 C 1.46499 * 119.99986 * 184.84417 * 12 10 9 15 15 C 1.53007 * 109.47047 * 84.64363 * 14 12 10 16 16 H 1.08991 * 112.96970 * 294.16284 * 15 14 12 17 17 C 1.53952 * 113.76602 * 65.84309 * 15 14 12 18 18 C 1.53952 * 86.28704 * 137.90499 * 17 15 14 19 19 N 1.47588 * 113.76594 * 162.48253 * 15 14 12 20 20 C 1.36936 * 134.49293 * 41.07395 * 19 15 14 21 21 H 1.08004 * 119.99741 * 4.72829 * 20 19 15 22 22 C 1.38809 * 119.99695 * 184.73129 * 20 19 15 23 23 N 1.31612 * 120.00572 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99727 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47231 * 89.99873 * 24 22 20 26 26 H 1.48503 * 109.47239 * 209.99901 * 24 22 20 27 27 H 1.48503 * 109.46959 * 329.99826 * 24 22 20 28 28 H 1.08999 * 109.46566 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47089 * 299.99722 * 1 2 3 30 30 H 1.09002 * 109.46824 * 60.00206 * 1 2 3 31 31 H 1.08995 * 109.47119 * 269.97956 * 6 5 4 32 32 H 1.09000 * 109.46748 * 29.97865 * 6 5 4 33 33 H 1.09003 * 109.46716 * 149.97461 * 6 5 4 34 34 H 1.07999 * 120.50453 * 179.72331 * 8 7 5 35 35 H 1.09007 * 109.46591 * 95.77047 * 13 12 10 36 36 H 1.09004 * 109.47562 * 215.77109 * 13 12 10 37 37 H 1.09003 * 109.47161 * 335.77532 * 13 12 10 38 38 H 1.08996 * 109.47310 * 204.64548 * 14 12 10 39 39 H 1.09005 * 109.47234 * 324.64886 * 14 12 10 40 40 H 1.08995 * 113.73943 * 252.25207 * 17 15 14 41 41 H 1.08999 * 113.73926 * 23.45755 * 17 15 14 42 42 H 1.08993 * 113.76717 * 90.69435 * 18 17 15 43 43 H 1.09001 * 113.76616 * 221.98053 * 18 17 15 44 44 H 0.96993 * 120.00551 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 7 1.3320 2.3266 0.0005 5 6 1.9247 3.5030 0.0010 6 6 1.0742 4.7471 0.0022 7 7 3.2381 3.6284 0.0015 8 6 4.0262 2.5670 0.0011 9 6 3.4481 1.2941 0.0006 10 6 4.2858 0.0797 -0.0005 11 8 3.9047 -0.9222 0.5733 12 7 5.4735 0.0808 -0.6376 13 6 5.9814 1.3168 -1.2381 14 6 6.2565 -1.1539 -0.7297 15 6 5.7728 -1.9765 -1.9257 16 1 4.7526 -2.3411 -1.8065 17 6 6.0375 -1.3075 -3.2867 18 6 6.4574 -2.7044 -3.7790 19 7 6.7285 -3.0143 -2.3594 20 6 7.5396 -3.9045 -1.7077 21 1 7.4990 -3.9842 -0.6314 22 6 8.4141 -4.7043 -2.4305 23 7 8.4633 -4.6074 -3.7421 24 14 9.5211 -5.9182 -1.5415 25 1 8.8241 -7.2235 -1.4156 26 1 10.7768 -6.1000 -2.3131 27 1 9.8425 -5.3962 -0.1889 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.8691 5.0478 -1.0252 32 1 0.1345 4.5442 0.5160 33 1 1.6040 5.5488 0.5167 34 1 5.1001 2.6816 -0.0030 35 1 6.6623 1.8060 -0.5414 36 1 6.5126 1.0812 -2.1603 37 1 5.1473 1.9829 -1.4591 38 1 7.3100 -0.9071 -0.8608 39 1 6.1301 -1.7334 0.1848 40 1 5.1387 -0.9239 -3.7694 41 1 6.8522 -0.5835 -3.2687 42 1 5.6388 -3.2845 -4.2049 43 1 7.3474 -2.6993 -4.4082 44 1 9.0741 -5.1666 -4.2472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085631869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:21 Heat of formation + Delta-G solvation = 35.351763 kcal Electronic energy + Delta-G solvation = -27386.568633 eV Core-core repulsion = 23534.904147 eV Total energy + Delta-G solvation = -3851.664486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.66810 -40.84345 -39.76652 -39.42651 -36.65138 -34.80807 -34.19543 -33.81816 -30.72145 -29.86450 -29.63383 -28.36102 -27.65866 -25.35333 -24.90383 -24.80009 -23.66619 -21.27045 -20.72123 -19.66366 -19.07971 -18.77235 -18.17956 -17.56603 -17.17603 -16.88547 -16.40438 -16.20325 -15.94543 -15.70286 -15.60106 -15.30531 -14.98704 -14.56610 -14.17388 -13.97483 -13.86524 -13.55269 -13.36124 -13.26892 -13.18062 -13.01401 -12.87259 -12.64795 -12.55580 -12.51567 -12.30433 -12.28662 -11.79514 -11.58081 -11.39815 -11.36032 -10.94051 -10.83618 -10.61415 -10.22317 -9.68263 -8.90517 -7.88762 -5.23699 -0.61321 -0.07346 1.44718 1.46650 1.54225 1.56179 1.77687 1.88041 2.48251 2.54405 2.75347 2.92967 3.29137 3.32597 3.47063 3.58697 3.83754 3.91856 4.08821 4.20793 4.23975 4.27729 4.29809 4.30030 4.50525 4.59772 4.61953 4.72373 4.75431 4.76514 4.83520 4.90654 4.93672 4.99334 5.05459 5.22447 5.27866 5.41094 5.56745 5.60172 5.70838 5.93494 5.95738 6.32489 6.84640 6.93183 7.06208 7.61535 8.57560 9.27087 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.003005 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.654081 B = 9315.839585 C = 9656.384646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.398 3.602 4 N -0.582 5.582 5 C 0.367 3.633 6 C -0.086 4.086 7 N -0.546 5.546 8 C 0.217 3.783 9 C -0.286 4.286 10 C 0.566 3.434 11 O -0.569 6.569 12 N -0.595 5.595 13 C 0.050 3.950 14 C 0.138 3.862 15 C 0.130 3.870 16 H 0.022 0.978 17 C -0.122 4.122 18 C 0.147 3.853 19 N -0.627 5.627 20 C -0.231 4.231 21 H 0.077 0.923 22 C -0.063 4.063 23 N -0.951 5.951 24 Si 0.975 3.025 25 H -0.292 1.292 26 H -0.290 1.290 27 H -0.267 1.267 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.221 0.779 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.007 0.993 43 H 0.054 0.946 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.540 23.538 5.663 27.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.204 6.204 3 C 0.211 3.789 4 N -0.314 5.314 5 C 0.102 3.898 6 C -0.144 4.144 7 N -0.265 5.265 8 C 0.052 3.948 9 C -0.295 4.295 10 C 0.354 3.646 11 O -0.448 6.448 12 N -0.327 5.327 13 C -0.091 4.091 14 C 0.014 3.986 15 C 0.023 3.977 16 H 0.039 0.961 17 C -0.159 4.159 18 C 0.022 3.978 19 N -0.354 5.354 20 C -0.360 4.360 21 H 0.095 0.905 22 C -0.256 4.256 23 N -0.600 5.600 24 Si 0.803 3.197 25 H -0.219 1.219 26 H -0.216 1.216 27 H -0.192 1.192 28 H 0.134 0.866 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.237 0.763 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.025 0.975 43 H 0.072 0.928 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.991 23.233 5.991 27.774 hybrid contribution 0.652 -2.452 0.187 2.544 sum -13.339 20.781 6.178 25.455 Atomic orbital electron populations 1.23274 0.74713 1.05074 1.03351 1.86437 1.25367 1.23832 1.84723 1.20295 0.88650 0.85574 0.84411 1.68163 1.40864 0.98439 1.23952 1.24101 0.88875 0.92857 0.84010 1.20848 0.98175 0.89652 1.05680 1.68525 1.05569 1.32913 1.19531 1.24475 1.02755 0.84222 0.83314 1.20754 0.92174 0.97126 1.19428 1.17973 0.81119 0.86850 0.78635 1.90800 1.72289 1.36026 1.45687 1.47660 1.19090 1.11473 1.54497 1.22792 1.00901 0.85014 1.00441 1.21362 0.95174 0.84431 0.97657 1.22573 0.91730 0.88509 0.94937 0.96086 1.23513 1.01017 0.96493 0.94917 1.22289 0.96710 0.91478 0.87365 1.46457 1.45057 1.40572 1.03287 1.19350 1.12083 1.13362 0.91170 0.90522 1.25566 1.01488 1.02187 0.96405 1.69992 1.40978 1.43230 1.05805 0.85132 0.77923 0.78662 0.77944 1.21944 1.21608 1.19178 0.86592 0.91095 0.90955 0.87311 0.88482 0.87544 0.76265 0.88389 0.89408 0.89058 0.88533 0.93070 0.90797 0.88471 0.97545 0.92755 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.41 113.37 1.18 1.77 16 2 O -0.30 -9.07 9.23 -69.46 -0.64 -9.71 16 3 C 0.40 11.00 7.51 85.17 0.64 11.64 16 4 N -0.58 -13.10 9.26 -299.84 -2.78 -15.87 16 5 C 0.37 6.65 7.64 138.73 1.06 7.71 16 6 C -0.09 -0.76 10.31 71.24 0.73 -0.02 16 7 N -0.55 -10.05 10.31 -186.94 -1.93 -11.97 16 8 C 0.22 4.07 8.73 85.02 0.74 4.81 16 9 C -0.29 -7.58 5.48 -19.83 -0.11 -7.69 16 10 C 0.57 18.66 7.31 86.70 0.63 19.30 16 11 O -0.57 -24.39 15.63 12.18 0.19 -24.20 16 12 N -0.60 -16.95 2.78 -850.53 -2.37 -19.32 16 13 C 0.05 0.83 8.67 127.77 1.11 1.94 16 14 C 0.14 5.03 5.33 86.38 0.46 5.49 16 15 C 0.13 5.56 4.53 45.10 0.20 5.77 16 16 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 17 C -0.12 -4.47 7.18 31.25 0.22 -4.24 16 18 C 0.15 7.18 7.64 86.44 0.66 7.84 16 19 N -0.63 -33.13 3.58 -690.75 -2.47 -35.61 16 20 C -0.23 -13.32 10.51 84.03 0.88 -12.44 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 22 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 23 N -0.95 -58.03 11.32 21.65 0.25 -57.78 16 24 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 25 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 30 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.11 0.66 8.14 -2.39 -0.02 0.65 16 34 H 0.22 2.61 5.05 -2.91 -0.01 2.60 16 35 H 0.10 1.05 7.56 -2.38 -0.02 1.03 16 36 H 0.09 1.45 6.44 -2.39 -0.02 1.44 16 37 H 0.09 1.28 4.63 -2.39 -0.01 1.27 16 38 H 0.10 3.34 8.03 -2.39 -0.02 3.32 16 39 H 0.05 2.14 7.52 -2.38 -0.02 2.12 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.10 3.13 6.90 -2.39 -0.02 3.12 16 42 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.05 2.91 6.98 -2.39 -0.02 2.89 16 44 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -80.99 362.20 2.18 -78.81 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.02 Total: 8.23 kcal Atomic # 6 Polarization: 29.77 SS G_CDS: 8.89 Total: 38.66 kcal Atomic # 7 Polarization: -131.26 SS G_CDS: -9.30 Total: -140.56 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.45 Total: -33.91 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -80.99 2.18 -78.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085631869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.162 kcal (2) G-P(sol) polarization free energy of solvation -80.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds