Wall clock time and date at job start Tue Mar 31 2020 13:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39697 * 126.07021 * 2 1 4 4 N 1.30849 * 108.45598 * 180.02562 * 3 2 1 5 5 N 1.40071 * 108.42533 * 359.73973 * 4 3 2 6 6 C 1.46497 * 126.10175 * 180.27484 * 5 4 3 7 7 C 1.52995 * 109.47201 * 265.54914 * 6 5 4 8 8 C 1.52995 * 117.49896 * 243.64873 * 7 6 5 9 9 C 1.52998 * 117.49968 * 174.98771 * 7 6 5 10 10 C 1.35853 * 107.80059 * 0.42110 * 5 4 3 11 11 N 1.39199 * 126.27064 * 179.84883 * 10 5 4 12 12 C 1.34775 * 120.00270 * 148.86034 * 11 10 5 13 13 O 1.21399 * 119.99626 * 353.83849 * 12 11 10 14 14 C 1.49307 * 120.00340 * 173.84349 * 12 11 10 15 15 O 1.21364 * 119.99805 * 359.97438 * 14 12 11 16 16 N 1.34769 * 120.00030 * 179.97438 * 14 12 11 17 17 C 1.46500 * 120.00128 * 180.02562 * 16 14 12 18 18 H 1.09004 * 109.47268 * 325.00455 * 17 16 14 19 19 C 1.53004 * 109.47114 * 85.00209 * 17 16 14 20 20 C 1.50700 * 109.47465 * 205.00452 * 17 16 14 21 21 H 1.08005 * 119.99591 * 359.97438 * 20 17 16 22 22 C 1.37874 * 120.00188 * 180.02562 * 20 17 16 23 23 N 1.31513 * 120.00160 * 359.97438 * 22 20 17 24 24 Si 1.86806 * 120.00098 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47133 * 179.97438 * 24 22 20 26 26 H 1.48504 * 109.46941 * 299.99897 * 24 22 20 27 27 H 1.48494 * 109.47024 * 59.99673 * 24 22 20 28 28 H 1.09006 * 109.47455 * 275.57751 * 1 2 3 29 29 H 1.08999 * 109.47127 * 35.57381 * 1 2 3 30 30 H 1.08999 * 109.47586 * 155.57352 * 1 2 3 31 31 H 1.07995 * 125.77069 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.46891 * 25.54516 * 6 5 4 33 33 H 1.09007 * 109.47571 * 145.54424 * 6 5 4 34 34 H 1.09002 * 115.55363 * 29.31902 * 7 6 5 35 35 H 1.09002 * 117.50054 * 359.97438 * 8 7 6 36 36 H 1.09003 * 117.50396 * 145.02174 * 8 7 6 37 37 H 1.09004 * 117.49931 * 214.97526 * 9 7 6 38 38 H 1.09000 * 117.50128 * 359.97438 * 9 7 6 39 39 H 0.97006 * 119.99910 * 328.85108 * 11 10 5 40 40 H 0.97000 * 120.00196 * 0.02562 * 16 14 12 41 41 H 1.09001 * 109.47071 * 60.00466 * 19 17 16 42 42 H 1.08995 * 109.46822 * 180.02562 * 19 17 16 43 43 H 1.08999 * 109.46986 * 299.99893 * 19 17 16 44 44 H 0.96996 * 120.00353 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3295 1.1292 0.0000 4 7 3.5766 0.7332 -0.0006 5 7 3.5964 -0.6674 0.0051 6 6 4.7922 -1.5137 0.0121 7 6 5.1482 -1.9054 -1.4233 8 6 5.0838 -3.3901 -1.7870 9 6 6.4401 -2.6959 -1.6401 10 6 2.3090 -1.1010 -0.0004 11 7 1.8867 -2.4274 -0.0005 12 6 0.7275 -2.7657 0.5981 13 8 0.1077 -1.9369 1.2326 14 6 0.2058 -4.1597 0.4809 15 8 0.8253 -4.9881 -0.1538 16 7 -0.9531 -4.4980 1.0798 17 6 -1.4648 -5.8659 0.9653 18 1 -1.2213 -6.2637 -0.0199 19 6 -0.8223 -6.7426 2.0422 20 6 -2.9606 -5.8599 1.1489 21 1 -3.4782 -4.9300 1.3330 22 6 -3.6680 -7.0414 1.0830 23 7 -3.0376 -8.1738 0.8594 24 14 -5.5221 -7.0340 1.3114 25 1 -6.0407 -8.4206 1.1952 26 1 -5.8533 -6.4919 2.6537 27 1 -6.1461 -6.1834 0.2663 28 1 -0.3634 0.0999 1.0228 29 1 -0.3633 0.8359 -0.5978 30 1 -0.3634 -0.9356 -0.4249 31 1 1.9929 2.1553 -0.0004 32 1 5.6230 -0.9649 0.4557 33 1 4.5975 -2.4130 0.5966 34 1 4.8633 -1.1863 -2.1914 35 1 4.7882 -4.0879 -1.0035 36 1 4.7569 -3.6479 -2.7944 37 1 7.0049 -2.4971 -2.5510 38 1 7.0367 -2.9365 -0.7602 39 1 2.4268 -3.1083 -0.4315 40 1 -1.4485 -3.8358 1.5868 41 1 -1.0658 -6.3450 3.0274 42 1 -1.2027 -7.7605 1.9566 43 1 0.2596 -6.7471 1.9093 44 1 -3.5354 -9.0050 0.8127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116711351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:07 Heat of formation + Delta-G solvation = 43.876796 kcal Electronic energy + Delta-G solvation = -27044.340367 eV Core-core repulsion = 23193.045554 eV Total energy + Delta-G solvation = -3851.294812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.76463 -40.10582 -38.21316 -37.87042 -35.50094 -34.66387 -33.32077 -32.46647 -30.83939 -29.22657 -28.04175 -25.59813 -25.38450 -24.74630 -22.80040 -21.89744 -21.59914 -20.76372 -19.92829 -19.39153 -18.76220 -17.64152 -16.63685 -16.16960 -15.97982 -15.64366 -15.38702 -15.14961 -14.88536 -14.40333 -14.19668 -13.92914 -13.55766 -13.35294 -13.32680 -12.67503 -12.54491 -12.45541 -12.01535 -11.92567 -11.87527 -11.86230 -11.31794 -11.17279 -11.04565 -11.01718 -10.85617 -10.83167 -10.47473 -10.43762 -10.34203 -10.29229 -9.22649 -9.16146 -9.03807 -8.67340 -8.21721 -8.04801 -6.21630 -4.31618 1.31463 1.86450 2.05509 2.72963 2.77189 3.22946 3.27936 3.29935 3.37126 3.59256 3.94083 4.21723 4.29127 4.30557 4.54572 4.59215 4.80547 4.95224 5.06317 5.11607 5.12216 5.24392 5.29290 5.38215 5.54821 5.66442 5.71271 5.75428 5.80029 6.04313 6.21079 6.34817 6.64694 6.67140 6.77122 6.82960 6.88469 6.95965 7.12944 7.31325 7.56337 7.63216 7.70867 7.82051 7.99546 8.35017 8.53082 8.78341 9.35697 10.84382 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017766 B = 0.003080 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.659661 B = 9089.450319 C =10326.015378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.228 4.228 3 C 0.062 3.938 4 N -0.287 5.287 5 N -0.381 5.381 6 C 0.163 3.837 7 C -0.182 4.182 8 C -0.179 4.179 9 C -0.165 4.165 10 C 0.307 3.693 11 N -0.631 5.631 12 C 0.505 3.495 13 O -0.479 6.479 14 C 0.499 3.501 15 O -0.535 6.535 16 N -0.665 5.665 17 C 0.263 3.737 18 H 0.055 0.945 19 C -0.149 4.149 20 C -0.538 4.538 21 H 0.065 0.935 22 C 0.069 3.931 23 N -0.883 5.883 24 Si 0.905 3.095 25 H -0.285 1.285 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.186 0.814 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.422 0.578 40 H 0.403 0.597 41 H 0.030 0.970 42 H 0.095 0.905 43 H 0.016 0.984 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.435 12.848 -2.782 19.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.242 4.242 3 C -0.124 4.124 4 N -0.108 5.108 5 N -0.169 5.169 6 C 0.041 3.959 7 C -0.201 4.201 8 C -0.216 4.216 9 C -0.203 4.203 10 C 0.088 3.912 11 N -0.283 5.283 12 C 0.287 3.713 13 O -0.350 6.350 14 C 0.277 3.723 15 O -0.413 6.413 16 N -0.314 5.314 17 C 0.162 3.838 18 H 0.073 0.927 19 C -0.207 4.207 20 C -0.577 4.577 21 H 0.083 0.917 22 C -0.135 4.135 23 N -0.521 5.521 24 Si 0.732 3.268 25 H -0.211 1.211 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.203 0.797 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.260 0.740 40 H 0.238 0.762 41 H 0.050 0.950 42 H 0.113 0.887 43 H 0.035 0.965 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.621 12.829 -2.763 20.402 hybrid contribution -1.587 -0.378 0.098 1.634 sum 14.034 12.451 -2.665 18.949 Atomic orbital electron populations 1.20178 0.88317 1.00715 1.02095 1.19719 0.97296 0.90026 1.17165 1.23565 0.89660 0.99633 0.99523 1.77394 1.20762 0.86763 1.25881 1.48680 1.03285 1.04750 1.60146 1.21248 0.85641 0.93382 0.95619 1.22758 1.03831 0.95862 0.97653 1.23215 1.00628 0.93884 1.03897 1.22957 0.90468 1.03170 1.03702 1.17693 0.85307 0.85282 1.02920 1.42454 1.23690 1.06252 1.55874 1.20958 0.80392 0.90250 0.79680 1.90850 1.56718 1.50451 1.36952 1.19507 0.83880 0.86552 0.82405 1.90736 1.58033 1.50755 1.41818 1.46504 1.20035 1.16084 1.48738 1.18996 0.93083 0.74693 0.97040 0.92723 1.22107 0.96576 1.04076 0.97985 1.21150 0.90650 0.94235 1.51638 0.91718 1.24869 0.99131 0.95121 0.94385 1.69873 1.36014 0.98351 1.47813 0.86446 0.84238 0.77222 0.78890 1.21079 1.20013 1.20032 0.90630 0.93160 0.92617 0.79738 0.87771 0.89183 0.86957 0.88057 0.88098 0.88293 0.88324 0.74000 0.76235 0.95046 0.88660 0.96503 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 8.25 36.00 0.30 -0.45 16 2 C -0.23 -3.16 5.79 -104.81 -0.61 -3.76 16 3 C 0.06 0.76 11.94 -17.43 -0.21 0.55 16 4 N -0.29 -3.76 12.56 30.59 0.38 -3.38 16 5 N -0.38 -4.73 3.64 -60.29 -0.22 -4.95 16 6 C 0.16 1.50 6.64 -4.05 -0.03 1.48 16 7 C -0.18 -1.53 6.01 -90.63 -0.54 -2.07 16 8 C -0.18 -1.42 10.18 -26.70 -0.27 -1.69 16 9 C -0.17 -1.11 10.25 -26.69 -0.27 -1.38 16 10 C 0.31 4.26 7.38 -152.86 -1.13 3.13 16 11 N -0.63 -8.80 5.30 -11.80 -0.06 -8.86 16 12 C 0.50 8.21 6.84 -11.65 -0.08 8.13 16 13 O -0.48 -8.14 11.65 5.45 0.06 -8.07 16 14 C 0.50 9.48 7.85 -11.66 -0.09 9.39 16 15 O -0.53 -11.21 16.15 5.48 0.09 -11.12 16 16 N -0.66 -13.56 5.06 -55.41 -0.28 -13.84 16 17 C 0.26 6.37 2.56 -69.08 -0.18 6.19 16 18 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 19 C -0.15 -3.51 9.26 37.16 0.34 -3.17 16 20 C -0.54 -13.82 8.73 -34.44 -0.30 -14.12 16 21 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 22 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 23 N -0.88 -23.94 11.32 55.43 0.63 -23.31 16 24 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 25 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.08 1.07 7.17 -51.93 -0.37 0.70 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.84 6.08 -51.93 -0.32 0.52 16 31 H 0.19 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.76 7.88 -51.93 -0.41 0.35 16 34 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.42 5.32 8.28 -40.82 -0.34 4.99 16 40 H 0.40 7.61 8.01 -40.82 -0.33 7.29 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 371.86 15.07 5.60 5.60 Total: -1.00 -29.41 371.86 -8.21 -37.62 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -6.23 Total: 11.27 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -3.16 Total: 3.92 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.45 Total: -54.34 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.15 Total: -19.19 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.41 -8.21 -37.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116711351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.500 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds