Wall clock time and date at job start Tue Mar 31 2020 13:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39697 * 126.07021 * 2 1 4 4 N 1.30849 * 108.45598 * 180.02562 * 3 2 1 5 5 N 1.40071 * 108.42533 * 359.73973 * 4 3 2 6 6 C 1.46497 * 126.10175 * 180.27484 * 5 4 3 7 7 C 1.52995 * 109.47201 * 265.54914 * 6 5 4 8 8 C 1.52995 * 117.49896 * 243.64873 * 7 6 5 9 9 C 1.52998 * 117.49968 * 174.98771 * 7 6 5 10 10 C 1.35853 * 107.80059 * 0.42110 * 5 4 3 11 11 N 1.39199 * 126.27064 * 179.84883 * 10 5 4 12 12 C 1.34775 * 120.00270 * 148.86034 * 11 10 5 13 13 O 1.21399 * 119.99626 * 353.83849 * 12 11 10 14 14 C 1.49307 * 120.00340 * 173.84349 * 12 11 10 15 15 O 1.21364 * 119.99805 * 359.97438 * 14 12 11 16 16 N 1.34769 * 120.00030 * 179.97438 * 14 12 11 17 17 C 1.46500 * 120.00128 * 180.02562 * 16 14 12 18 18 H 1.09004 * 109.47268 * 325.00455 * 17 16 14 19 19 C 1.53004 * 109.47114 * 85.00209 * 17 16 14 20 20 C 1.50700 * 109.47465 * 205.00452 * 17 16 14 21 21 H 1.08005 * 119.99591 * 359.97438 * 20 17 16 22 22 C 1.37874 * 120.00188 * 180.02562 * 20 17 16 23 23 N 1.31513 * 120.00160 * 359.97438 * 22 20 17 24 24 Si 1.86806 * 120.00098 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47133 * 179.97438 * 24 22 20 26 26 H 1.48504 * 109.46941 * 299.99897 * 24 22 20 27 27 H 1.48494 * 109.47024 * 59.99673 * 24 22 20 28 28 H 1.09006 * 109.47455 * 275.57751 * 1 2 3 29 29 H 1.08999 * 109.47127 * 35.57381 * 1 2 3 30 30 H 1.08999 * 109.47586 * 155.57352 * 1 2 3 31 31 H 1.07995 * 125.77069 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.46891 * 25.54516 * 6 5 4 33 33 H 1.09007 * 109.47571 * 145.54424 * 6 5 4 34 34 H 1.09002 * 115.55363 * 29.31902 * 7 6 5 35 35 H 1.09002 * 117.50054 * 359.97438 * 8 7 6 36 36 H 1.09003 * 117.50396 * 145.02174 * 8 7 6 37 37 H 1.09004 * 117.49931 * 214.97526 * 9 7 6 38 38 H 1.09000 * 117.50128 * 359.97438 * 9 7 6 39 39 H 0.97006 * 119.99910 * 328.85108 * 11 10 5 40 40 H 0.97000 * 120.00196 * 0.02562 * 16 14 12 41 41 H 1.09001 * 109.47071 * 60.00466 * 19 17 16 42 42 H 1.08995 * 109.46822 * 180.02562 * 19 17 16 43 43 H 1.08999 * 109.46986 * 299.99893 * 19 17 16 44 44 H 0.96996 * 120.00353 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3295 1.1292 0.0000 4 7 3.5766 0.7332 -0.0006 5 7 3.5964 -0.6674 0.0051 6 6 4.7922 -1.5137 0.0121 7 6 5.1482 -1.9054 -1.4233 8 6 5.0838 -3.3901 -1.7870 9 6 6.4401 -2.6959 -1.6401 10 6 2.3090 -1.1010 -0.0004 11 7 1.8867 -2.4274 -0.0005 12 6 0.7275 -2.7657 0.5981 13 8 0.1077 -1.9369 1.2326 14 6 0.2058 -4.1597 0.4809 15 8 0.8253 -4.9881 -0.1538 16 7 -0.9531 -4.4980 1.0798 17 6 -1.4648 -5.8659 0.9653 18 1 -1.2213 -6.2637 -0.0199 19 6 -0.8223 -6.7426 2.0422 20 6 -2.9606 -5.8599 1.1489 21 1 -3.4782 -4.9300 1.3330 22 6 -3.6680 -7.0414 1.0830 23 7 -3.0376 -8.1738 0.8594 24 14 -5.5221 -7.0340 1.3114 25 1 -6.0407 -8.4206 1.1952 26 1 -5.8533 -6.4919 2.6537 27 1 -6.1461 -6.1834 0.2663 28 1 -0.3634 0.0999 1.0228 29 1 -0.3633 0.8359 -0.5978 30 1 -0.3634 -0.9356 -0.4249 31 1 1.9929 2.1553 -0.0004 32 1 5.6230 -0.9649 0.4557 33 1 4.5975 -2.4130 0.5966 34 1 4.8633 -1.1863 -2.1914 35 1 4.7882 -4.0879 -1.0035 36 1 4.7569 -3.6479 -2.7944 37 1 7.0049 -2.4971 -2.5510 38 1 7.0367 -2.9365 -0.7602 39 1 2.4268 -3.1083 -0.4315 40 1 -1.4485 -3.8358 1.5868 41 1 -1.0658 -6.3450 3.0274 42 1 -1.2027 -7.7605 1.9566 43 1 0.2596 -6.7471 1.9093 44 1 -3.5354 -9.0050 0.8127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116711351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:07 Heat of formation + Delta-G solvation = 25.905048 kcal Electronic energy + Delta-G solvation = -27045.119680 eV Core-core repulsion = 23193.045554 eV Total energy + Delta-G solvation = -3852.074126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.84439 -41.45576 -39.69108 -38.54784 -37.10730 -36.08513 -34.39013 -34.17430 -31.89358 -31.05354 -28.99094 -27.37544 -26.63088 -26.09857 -23.43005 -23.16480 -22.73243 -21.73534 -21.42118 -20.61036 -20.11470 -18.78849 -18.18345 -17.65917 -17.30631 -17.03258 -16.56451 -16.39095 -15.99873 -15.69168 -15.42260 -15.04706 -14.91699 -14.60102 -14.43772 -14.15501 -13.76179 -13.65282 -13.44501 -13.16956 -13.08253 -12.90170 -12.79467 -12.71723 -12.52455 -12.43243 -12.28839 -12.15864 -12.07050 -11.51134 -11.43855 -11.16680 -11.08279 -10.69066 -10.59456 -10.02519 -9.98782 -9.12068 -8.19704 -6.36865 0.02482 0.72269 0.92825 1.47282 1.48390 1.55821 1.63372 1.74594 2.14149 2.38843 2.60964 2.76971 3.11513 3.41308 3.46848 3.60120 3.88514 3.93920 4.07590 4.17661 4.25111 4.45813 4.46681 4.67482 4.70238 4.70925 4.75043 4.88486 4.95821 4.99037 5.01632 5.10016 5.17427 5.19071 5.29342 5.30354 5.41855 5.58414 5.66945 5.73597 5.78699 5.87787 6.03898 6.44902 6.63591 6.64879 6.72849 7.04181 7.35359 8.86184 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017766 B = 0.003080 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.659661 B = 9089.450319 C =10326.015378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.243 4.243 3 C 0.066 3.934 4 N -0.298 5.298 5 N -0.378 5.378 6 C 0.157 3.843 7 C -0.186 4.186 8 C -0.189 4.189 9 C -0.147 4.147 10 C 0.288 3.712 11 N -0.617 5.617 12 C 0.517 3.483 13 O -0.485 6.485 14 C 0.501 3.499 15 O -0.555 6.555 16 N -0.666 5.666 17 C 0.270 3.730 18 H 0.017 0.983 19 C -0.137 4.137 20 C -0.553 4.553 21 H 0.072 0.928 22 C 0.021 3.979 23 N -0.913 5.913 24 Si 0.970 3.030 25 H -0.284 1.284 26 H -0.266 1.266 27 H -0.271 1.271 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.218 0.782 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.427 0.573 40 H 0.411 0.589 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.021 0.979 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.832 14.379 -2.465 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.257 4.257 3 C -0.120 4.120 4 N -0.120 5.120 5 N -0.166 5.166 6 C 0.036 3.964 7 C -0.206 4.206 8 C -0.226 4.226 9 C -0.185 4.185 10 C 0.069 3.931 11 N -0.268 5.268 12 C 0.298 3.702 13 O -0.356 6.356 14 C 0.281 3.719 15 O -0.435 6.435 16 N -0.316 5.316 17 C 0.167 3.833 18 H 0.034 0.966 19 C -0.196 4.196 20 C -0.592 4.592 21 H 0.090 0.910 22 C -0.179 4.179 23 N -0.550 5.550 24 Si 0.794 3.206 25 H -0.210 1.210 26 H -0.191 1.191 27 H -0.196 1.196 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.234 0.766 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.267 0.733 40 H 0.248 0.752 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.040 0.960 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.060 14.390 -2.452 21.703 hybrid contribution -1.616 -0.812 -0.056 1.809 sum 14.445 13.577 -2.507 19.982 Atomic orbital electron populations 1.20096 0.88305 1.00601 1.01762 1.19990 0.97619 0.90733 1.17352 1.24061 0.88878 1.00710 0.98349 1.77371 1.21403 0.87105 1.26077 1.48910 1.03449 1.04779 1.59430 1.21513 0.85011 0.93479 0.96375 1.22602 1.05586 0.95667 0.96711 1.23246 1.02032 0.93565 1.03708 1.23068 0.89809 1.00955 1.04653 1.17808 0.86310 0.84873 1.04072 1.42173 1.22795 1.06823 1.55050 1.20170 0.81132 0.88638 0.80267 1.90861 1.57184 1.50027 1.37519 1.19879 0.83096 0.87677 0.81277 1.90723 1.58472 1.51911 1.42383 1.46232 1.20803 1.14991 1.49544 1.18622 0.92996 0.76490 0.95149 0.96555 1.21937 0.96659 1.02750 0.98234 1.21473 0.91465 0.94666 1.51546 0.91006 1.25696 1.03481 0.94761 0.94005 1.70002 1.37632 0.98883 1.48528 0.85429 0.78896 0.77156 0.79092 1.20982 1.19107 1.19624 0.91495 0.90846 0.94602 0.76551 0.86487 0.88470 0.88388 0.88145 0.88461 0.87402 0.86864 0.73334 0.75248 0.94123 0.90815 0.95980 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.29 8.25 71.23 0.59 -0.70 16 2 C -0.24 -6.38 5.79 -19.99 -0.12 -6.49 16 3 C 0.07 1.46 11.94 85.19 1.02 2.47 16 4 N -0.30 -7.29 12.56 -57.13 -0.72 -8.00 16 5 N -0.38 -8.89 3.64 -344.67 -1.25 -10.14 16 6 C 0.16 2.67 6.64 86.38 0.57 3.24 16 7 C -0.19 -2.92 6.01 -10.80 -0.06 -2.99 16 8 C -0.19 -2.82 10.18 30.62 0.31 -2.51 16 9 C -0.15 -1.70 10.25 30.62 0.31 -1.39 16 10 C 0.29 7.71 7.38 131.25 0.97 8.68 16 11 N -0.62 -16.87 5.30 -309.58 -1.64 -18.51 16 12 C 0.52 16.61 6.84 87.23 0.60 17.21 16 13 O -0.48 -16.16 11.65 -3.40 -0.04 -16.20 16 14 C 0.50 19.17 7.85 87.23 0.68 19.86 16 15 O -0.56 -23.60 16.15 -3.29 -0.05 -23.65 16 16 N -0.67 -27.35 5.06 -447.58 -2.27 -29.62 16 17 C 0.27 13.31 2.56 44.25 0.11 13.42 16 18 H 0.02 0.94 7.58 -2.38 -0.02 0.92 16 19 C -0.14 -6.55 9.26 71.98 0.67 -5.88 16 20 C -0.55 -28.48 8.73 25.60 0.22 -28.26 16 21 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 22 C 0.02 1.12 5.30 84.65 0.45 1.56 16 23 N -0.91 -50.13 11.32 21.45 0.24 -49.89 16 24 Si 0.97 40.99 29.54 68.60 2.03 43.01 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 28 H 0.07 1.83 7.17 -2.38 -0.02 1.82 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.03 1.05 6.08 -2.39 -0.01 1.03 16 31 H 0.22 3.09 8.06 -2.91 -0.02 3.06 16 32 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.10 1.51 7.88 -2.38 -0.02 1.49 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.10 1.51 8.03 -2.39 -0.02 1.49 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.43 10.63 8.28 -92.70 -0.77 9.86 16 40 H 0.41 15.46 8.01 -92.71 -0.74 14.72 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 43 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -62.58 371.86 2.16 -60.42 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.46 Total: 34.34 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 6.33 Total: 18.24 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -5.64 Total: -116.16 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.09 Total: -39.86 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Total: -62.58 2.16 -60.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116711351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.327 kcal (2) G-P(sol) polarization free energy of solvation -62.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds