Wall clock time and date at job start Tue Mar 31 2020 14:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30294 * 126.34641 * 2 1 4 4 N 1.28527 * 110.05342 * 180.02562 * 3 2 1 5 5 C 1.31218 * 109.85910 * 359.74177 * 4 3 2 6 6 N 1.38580 * 126.47077 * 180.25533 * 5 4 3 7 7 C 1.46895 * 111.00445 * 260.82548 * 6 5 4 8 8 C 1.46900 * 111.00169 * 24.78391 * 6 5 4 9 9 H 1.09008 * 109.46718 * 299.99469 * 8 6 5 10 10 C 1.52996 * 109.47464 * 59.99266 * 8 6 5 11 11 C 1.50698 * 109.47425 * 179.97438 * 8 6 5 12 12 H 1.08004 * 119.99747 * 359.97438 * 11 8 6 13 13 C 1.37869 * 120.00231 * 179.97438 * 11 8 6 14 14 N 1.31514 * 120.00512 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 120.00087 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.47136 * 90.00090 * 15 13 11 17 17 H 1.48503 * 109.47497 * 209.99641 * 15 13 11 18 18 H 1.48491 * 109.47330 * 330.00252 * 15 13 11 19 19 N 1.36451 * 107.05117 * 0.40443 * 5 4 3 20 20 C 1.46501 * 127.13042 * 179.87786 * 19 5 4 21 21 C 1.53006 * 109.46923 * 263.96245 * 20 19 5 22 22 C 1.53002 * 109.47123 * 175.12380 * 21 20 19 23 23 C 1.52996 * 109.47008 * 179.97438 * 22 21 20 24 24 F 1.39900 * 109.47474 * 59.99662 * 23 22 21 25 25 F 1.39893 * 109.47327 * 179.97438 * 23 22 21 26 26 F 1.39903 * 109.46984 * 299.99455 * 23 22 21 27 27 H 1.09002 * 109.47298 * 269.96253 * 1 2 3 28 28 H 1.09000 * 109.47114 * 29.96394 * 1 2 3 29 29 H 1.09004 * 109.47313 * 149.96052 * 1 2 3 30 30 H 1.09003 * 109.47195 * 54.82626 * 7 6 5 31 31 H 1.08997 * 109.47453 * 174.83271 * 7 6 5 32 32 H 1.09004 * 109.47000 * 294.83294 * 7 6 5 33 33 H 1.08999 * 109.47308 * 300.00200 * 10 8 6 34 34 H 1.08999 * 109.46997 * 60.00117 * 10 8 6 35 35 H 1.09002 * 109.47565 * 180.02562 * 10 8 6 36 36 H 0.96998 * 120.00820 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.46966 * 143.96698 * 20 19 5 38 38 H 1.08997 * 109.47532 * 23.95623 * 20 19 5 39 39 H 1.08993 * 109.47407 * 55.11451 * 21 20 19 40 40 H 1.09007 * 109.46460 * 295.11880 * 21 20 19 41 41 H 1.08998 * 109.46491 * 299.99374 * 22 21 20 42 42 H 1.08994 * 109.47003 * 59.99374 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5128 0.6889 -0.0005 5 6 3.5944 -0.6208 0.0046 6 7 4.7579 -1.3736 0.0108 7 6 5.0850 -1.8483 -1.3403 8 6 5.8747 -0.6120 0.5859 9 1 6.0438 0.2877 -0.0058 10 6 5.5366 -0.2196 2.0256 11 6 7.1196 -1.4613 0.5764 12 1 7.0845 -2.4664 0.1828 13 6 8.3032 -0.9552 1.0701 14 7 8.3461 0.2690 1.5489 15 14 9.8461 -2.0082 1.0589 16 1 10.5777 -1.8007 -0.2166 17 1 10.7174 -1.6218 2.1977 18 1 9.4699 -3.4389 1.1866 19 7 2.3173 -1.1013 -0.0005 20 6 1.9010 -2.5059 -0.0002 21 6 1.6172 -2.9540 -1.4354 22 6 1.3006 -4.4508 -1.4491 23 6 1.0163 -4.8988 -2.8841 24 9 2.1395 -4.6524 -3.6809 25 9 0.7273 -6.2675 -2.8968 26 9 -0.0776 -4.1862 -3.3870 27 1 -0.3634 -0.0007 1.0277 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3634 -0.8896 -0.5145 30 1 5.1350 -0.9989 -2.0217 31 1 6.0485 -2.3576 -1.3232 32 1 4.3141 -2.5406 -1.6787 33 1 4.6362 0.3946 2.0328 34 1 5.3675 -1.1193 2.6172 35 1 6.3651 0.3458 2.4522 36 1 9.1789 0.6252 1.8959 37 1 0.9981 -2.6170 0.6003 38 1 2.6961 -3.1205 0.4218 39 1 2.4926 -2.7620 -2.0557 40 1 0.7651 -2.3987 -1.8276 41 1 2.1527 -5.0060 -1.0569 42 1 0.4252 -4.6427 -0.8287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433271579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:36 Heat of formation + Delta-G solvation = -71.310573 kcal Electronic energy + Delta-G solvation = -28210.490713 eV Core-core repulsion = 23812.344261 eV Total energy + Delta-G solvation = -4398.146452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.40000 -47.91000 -47.86127 -42.53864 -37.12763 -36.51986 -33.38730 -32.97029 -31.39634 -29.29373 -28.58029 -27.34615 -25.31146 -24.44465 -24.27630 -22.29133 -21.87087 -20.36327 -19.49219 -18.86012 -18.64065 -17.85098 -16.67483 -16.13328 -15.96288 -15.77379 -15.32076 -14.80587 -14.67348 -14.55060 -14.29921 -14.03986 -14.03579 -13.95036 -13.87026 -13.47575 -13.27394 -12.89762 -12.79958 -12.69101 -12.40741 -12.33949 -12.04624 -11.83383 -11.41484 -11.08384 -11.01446 -10.94403 -10.72866 -10.31818 -10.21813 -10.10113 -9.95637 -9.78907 -9.19665 -8.62757 -8.46857 -7.53355 -6.06589 -4.14313 2.13252 2.38510 2.62633 3.26917 3.33943 3.35833 3.36458 3.45271 3.65451 3.70527 4.28708 4.34506 4.44358 4.57672 4.60125 4.69514 4.74906 4.93763 5.04692 5.15282 5.25418 5.35787 5.42430 5.51362 5.65733 5.79633 5.94137 6.09260 6.16365 6.37307 6.51506 6.88067 6.92373 7.07670 7.18457 7.42428 7.66622 7.71413 7.93806 8.21615 8.42714 8.87780 9.30398 9.50486 10.99889 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.004006 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.492209 B = 6986.969527 C = 8753.971862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.148 3.852 3 N -0.288 5.288 4 N -0.314 5.314 5 C 0.384 3.616 6 N -0.464 5.464 7 C 0.039 3.961 8 C 0.228 3.772 9 H 0.026 0.974 10 C -0.132 4.132 11 C -0.517 4.517 12 H 0.065 0.935 13 C 0.064 3.936 14 N -0.884 5.884 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 N -0.482 5.482 20 C 0.118 3.882 21 C -0.145 4.145 22 C -0.163 4.163 23 C 0.453 3.547 24 F -0.181 7.181 25 F -0.185 7.185 26 F -0.185 7.185 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.017 0.983 34 H 0.026 0.974 35 H 0.090 0.910 36 H 0.263 0.737 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.926 -10.842 -5.648 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.119 4.119 3 N -0.128 5.128 4 N -0.158 5.158 5 C 0.029 3.971 6 N -0.190 5.190 7 C -0.109 4.109 8 C 0.124 3.876 9 H 0.043 0.957 10 C -0.190 4.190 11 C -0.555 4.555 12 H 0.083 0.917 13 C -0.138 4.138 14 N -0.521 5.521 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 N -0.178 5.178 20 C -0.006 4.006 21 C -0.183 4.183 22 C -0.202 4.202 23 C 0.399 3.601 24 F -0.162 7.162 25 F -0.166 7.166 26 F -0.166 7.166 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.118 0.882 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.136 0.864 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.407 -9.668 -5.296 20.603 hybrid contribution 0.578 -1.448 -0.569 1.660 sum -16.829 -11.116 -5.865 21.004 Atomic orbital electron populations 1.20080 0.84416 1.03781 1.03364 1.24592 0.96215 0.82900 1.08191 1.73968 0.97051 1.24278 1.17527 1.74803 1.10747 1.08056 1.22146 1.23055 0.85347 0.89047 0.99692 1.59170 1.01425 1.37494 1.20887 1.22396 1.02604 0.99085 0.86769 1.19347 0.84016 0.92038 0.92209 0.95659 1.21804 1.00156 0.99025 0.98043 1.21043 0.92418 1.00164 1.41884 0.91680 1.24900 0.98879 0.95078 0.94993 1.69914 1.26871 1.14849 1.40508 0.86483 0.82705 0.80451 0.77663 1.20638 1.21161 1.19851 1.46223 1.06430 1.07453 1.57729 1.21635 1.02801 0.79685 0.96443 1.22054 1.04488 0.93256 0.98533 1.22788 1.07226 0.99057 0.91084 1.20527 0.74211 0.74919 0.90432 1.93218 1.52107 1.93948 1.76931 1.93195 1.93522 1.32839 1.97084 1.93188 1.55569 1.78296 1.89554 0.90235 0.89149 0.91091 0.95375 0.88249 0.93503 0.96443 0.95480 0.89179 0.92701 0.88887 0.87356 0.89338 0.89850 0.86405 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.20 36.00 0.37 -0.18 16 2 C 0.15 2.30 8.07 -154.03 -1.24 1.06 16 3 N -0.29 -5.85 12.18 32.99 0.40 -5.45 16 4 N -0.31 -7.21 10.28 30.31 0.31 -6.90 16 5 C 0.38 7.78 5.91 -318.88 -1.88 5.89 16 6 N -0.46 -9.78 4.61 -176.09 -0.81 -10.60 16 7 C 0.04 0.71 9.36 60.06 0.56 1.28 16 8 C 0.23 5.80 1.74 -68.87 -0.12 5.68 16 9 H 0.03 0.74 7.89 -51.92 -0.41 0.33 16 10 C -0.13 -3.39 8.81 37.16 0.33 -3.07 16 11 C -0.52 -13.58 7.81 -34.44 -0.27 -13.85 16 12 H 0.07 1.64 6.45 -52.48 -0.34 1.31 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 14 N -0.88 -25.05 11.32 55.43 0.63 -24.42 16 15 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 N -0.48 -7.43 2.81 -114.09 -0.32 -7.75 16 20 C 0.12 1.19 5.85 -4.04 -0.02 1.17 16 21 C -0.14 -1.21 5.29 -26.73 -0.14 -1.35 16 22 C -0.16 -0.97 5.26 -26.73 -0.14 -1.12 16 23 C 0.45 3.75 3.16 37.16 0.12 3.86 16 24 F -0.18 -1.86 16.80 2.25 0.04 -1.82 16 25 F -0.18 -1.64 17.32 2.25 0.04 -1.60 16 26 F -0.18 -1.67 16.80 2.25 0.04 -1.63 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.49 7.59 -51.93 -0.39 0.09 16 30 H 0.03 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.10 1.89 5.96 -51.93 -0.31 1.58 16 32 H 0.05 0.69 6.15 -51.93 -0.32 0.37 16 33 H 0.02 0.43 6.40 -51.93 -0.33 0.10 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 38 H 0.11 1.16 8.09 -51.93 -0.42 0.74 16 39 H 0.09 0.93 5.82 -51.93 -0.30 0.63 16 40 H 0.08 0.66 7.41 -51.93 -0.38 0.28 16 41 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 352.75 15.07 5.32 5.32 Total: -1.00 -32.83 352.75 -7.54 -40.37 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.61 Total: -2.14 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.54 Total: 1.02 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.21 Total: -55.12 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.11 Total: -5.05 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.83 -7.54 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433271579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.942 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds