Wall clock time and date at job start Tue Mar 31 2020 14:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30294 * 126.34641 * 2 1 4 4 N 1.28527 * 110.05342 * 180.02562 * 3 2 1 5 5 C 1.31218 * 109.85910 * 359.74177 * 4 3 2 6 6 N 1.38580 * 126.47077 * 180.25533 * 5 4 3 7 7 C 1.46895 * 111.00445 * 260.82548 * 6 5 4 8 8 C 1.46900 * 111.00169 * 24.78391 * 6 5 4 9 9 H 1.09008 * 109.46718 * 299.99469 * 8 6 5 10 10 C 1.52996 * 109.47464 * 59.99266 * 8 6 5 11 11 C 1.50698 * 109.47425 * 179.97438 * 8 6 5 12 12 H 1.08004 * 119.99747 * 359.97438 * 11 8 6 13 13 C 1.37869 * 120.00231 * 179.97438 * 11 8 6 14 14 N 1.31514 * 120.00512 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 120.00087 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.47136 * 90.00090 * 15 13 11 17 17 H 1.48503 * 109.47497 * 209.99641 * 15 13 11 18 18 H 1.48491 * 109.47330 * 330.00252 * 15 13 11 19 19 N 1.36451 * 107.05117 * 0.40443 * 5 4 3 20 20 C 1.46501 * 127.13042 * 179.87786 * 19 5 4 21 21 C 1.53006 * 109.46923 * 263.96245 * 20 19 5 22 22 C 1.53002 * 109.47123 * 175.12380 * 21 20 19 23 23 C 1.52996 * 109.47008 * 179.97438 * 22 21 20 24 24 F 1.39900 * 109.47474 * 59.99662 * 23 22 21 25 25 F 1.39893 * 109.47327 * 179.97438 * 23 22 21 26 26 F 1.39903 * 109.46984 * 299.99455 * 23 22 21 27 27 H 1.09002 * 109.47298 * 269.96253 * 1 2 3 28 28 H 1.09000 * 109.47114 * 29.96394 * 1 2 3 29 29 H 1.09004 * 109.47313 * 149.96052 * 1 2 3 30 30 H 1.09003 * 109.47195 * 54.82626 * 7 6 5 31 31 H 1.08997 * 109.47453 * 174.83271 * 7 6 5 32 32 H 1.09004 * 109.47000 * 294.83294 * 7 6 5 33 33 H 1.08999 * 109.47308 * 300.00200 * 10 8 6 34 34 H 1.08999 * 109.46997 * 60.00117 * 10 8 6 35 35 H 1.09002 * 109.47565 * 180.02562 * 10 8 6 36 36 H 0.96998 * 120.00820 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.46966 * 143.96698 * 20 19 5 38 38 H 1.08997 * 109.47532 * 23.95623 * 20 19 5 39 39 H 1.08993 * 109.47407 * 55.11451 * 21 20 19 40 40 H 1.09007 * 109.46460 * 295.11880 * 21 20 19 41 41 H 1.08998 * 109.46491 * 299.99374 * 22 21 20 42 42 H 1.08994 * 109.47003 * 59.99374 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5128 0.6889 -0.0005 5 6 3.5944 -0.6208 0.0046 6 7 4.7579 -1.3736 0.0108 7 6 5.0850 -1.8483 -1.3403 8 6 5.8747 -0.6120 0.5859 9 1 6.0438 0.2877 -0.0058 10 6 5.5366 -0.2196 2.0256 11 6 7.1196 -1.4613 0.5764 12 1 7.0845 -2.4664 0.1828 13 6 8.3032 -0.9552 1.0701 14 7 8.3461 0.2690 1.5489 15 14 9.8461 -2.0082 1.0589 16 1 10.5777 -1.8007 -0.2166 17 1 10.7174 -1.6218 2.1977 18 1 9.4699 -3.4389 1.1866 19 7 2.3173 -1.1013 -0.0005 20 6 1.9010 -2.5059 -0.0002 21 6 1.6172 -2.9540 -1.4354 22 6 1.3006 -4.4508 -1.4491 23 6 1.0163 -4.8988 -2.8841 24 9 2.1395 -4.6524 -3.6809 25 9 0.7273 -6.2675 -2.8968 26 9 -0.0776 -4.1862 -3.3870 27 1 -0.3634 -0.0007 1.0277 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3634 -0.8896 -0.5145 30 1 5.1350 -0.9989 -2.0217 31 1 6.0485 -2.3576 -1.3232 32 1 4.3141 -2.5406 -1.6787 33 1 4.6362 0.3946 2.0328 34 1 5.3675 -1.1193 2.6172 35 1 6.3651 0.3458 2.4522 36 1 9.1789 0.6252 1.8959 37 1 0.9981 -2.6170 0.6003 38 1 2.6961 -3.1205 0.4218 39 1 2.4926 -2.7620 -2.0557 40 1 0.7651 -2.3987 -1.8276 41 1 2.1527 -5.0060 -1.0569 42 1 0.4252 -4.6427 -0.8287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433271579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:36 Heat of formation + Delta-G solvation = -90.286204 kcal Electronic energy + Delta-G solvation = -28211.313558 eV Core-core repulsion = 23812.344261 eV Total energy + Delta-G solvation = -4398.969297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.05461 -48.56175 -48.54611 -43.91081 -38.83894 -37.42045 -34.93917 -34.29484 -32.60557 -31.21977 -29.47507 -28.61421 -27.16531 -26.02439 -25.19234 -23.59422 -22.91276 -21.54757 -21.10735 -19.50852 -19.31002 -18.75344 -18.26795 -17.59547 -17.30777 -16.94423 -16.53597 -16.24006 -15.59861 -15.45517 -15.43482 -15.10001 -14.96584 -14.75052 -14.71322 -14.68579 -14.31793 -14.20256 -13.90098 -13.58932 -13.50328 -13.29688 -13.08394 -12.99317 -12.76445 -12.71848 -12.70911 -12.34644 -12.23089 -12.17480 -12.04894 -11.88354 -11.39363 -11.06162 -11.02403 -10.57635 -10.21922 -9.19536 -8.12263 -6.27523 0.85060 1.33923 1.46830 1.47124 1.57940 1.87056 1.92524 2.42467 2.83889 2.96928 3.11381 3.13719 3.20415 3.56447 3.64793 3.88425 3.91554 4.06643 4.13842 4.27523 4.35723 4.47936 4.54501 4.64182 4.69295 4.75320 4.81592 4.86937 4.92324 4.99602 5.00870 5.10554 5.14948 5.21463 5.43992 5.60795 5.66023 5.93863 6.03000 6.16873 6.62458 6.83112 7.41575 7.88699 8.94852 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.004006 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.492209 B = 6986.969527 C = 8753.971862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.176 3.824 3 N -0.343 5.343 4 N -0.370 5.370 5 C 0.363 3.637 6 N -0.456 5.456 7 C 0.042 3.958 8 C 0.239 3.761 9 H -0.025 1.025 10 C -0.114 4.114 11 C -0.524 4.524 12 H 0.077 0.923 13 C 0.012 3.988 14 N -0.921 5.921 15 Si 0.969 3.031 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.259 1.259 19 N -0.472 5.472 20 C 0.108 3.892 21 C -0.138 4.138 22 C -0.151 4.151 23 C 0.449 3.551 24 F -0.197 7.197 25 F -0.189 7.189 26 F -0.190 7.190 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.008 0.992 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.011 0.989 34 H 0.031 0.969 35 H 0.063 0.937 36 H 0.263 0.737 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.175 -13.706 -5.535 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.093 4.093 3 N -0.182 5.182 4 N -0.213 5.213 5 C 0.005 3.995 6 N -0.181 5.181 7 C -0.105 4.105 8 C 0.133 3.867 9 H -0.008 1.008 10 C -0.172 4.172 11 C -0.563 4.563 12 H 0.095 0.905 13 C -0.187 4.187 14 N -0.560 5.560 15 Si 0.794 3.206 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.183 1.183 19 N -0.167 5.167 20 C -0.013 4.013 21 C -0.176 4.176 22 C -0.190 4.190 23 C 0.395 3.605 24 F -0.179 7.179 25 F -0.170 7.170 26 F -0.172 7.172 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.026 0.974 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.030 0.970 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.155 0.845 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.147 0.853 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.697 -12.567 -5.200 23.936 hybrid contribution 1.096 -0.548 -0.661 1.392 sum -18.601 -13.115 -5.861 23.502 Atomic orbital electron populations 1.20447 0.79668 1.06007 1.05491 1.25762 0.98300 0.81733 1.03468 1.73860 0.96737 1.26683 1.20921 1.74647 1.12806 1.10125 1.23690 1.22891 0.86568 0.88783 1.01278 1.59087 1.00632 1.36451 1.21979 1.22434 1.03737 0.98878 0.85403 1.18942 0.85835 0.90621 0.91288 1.00753 1.21562 0.98676 0.98553 0.98409 1.21356 0.92860 1.00573 1.41477 0.90547 1.25802 1.02215 0.96163 0.94549 1.70080 1.27606 1.16741 1.41535 0.85384 0.78472 0.79248 0.77483 1.20228 1.21288 1.18327 1.46434 1.04383 1.09589 1.56328 1.22122 1.04477 0.76442 0.98280 1.21945 1.03782 0.95125 0.96783 1.22801 1.09322 0.97074 0.89778 1.20906 0.73576 0.74722 0.91247 1.93190 1.52994 1.94035 1.77649 1.93188 1.93506 1.33203 1.97124 1.93178 1.55794 1.78374 1.89804 0.87930 0.88506 0.87301 0.97353 0.88913 0.89500 0.96994 0.94950 0.91841 0.92823 0.84532 0.87732 0.91902 0.88880 0.85326 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.20 71.23 0.73 -0.12 16 2 C 0.18 5.14 8.07 137.64 1.11 6.25 16 3 N -0.34 -14.12 12.18 -49.55 -0.60 -14.72 16 4 N -0.37 -17.68 10.28 -58.01 -0.60 -18.28 16 5 C 0.36 14.85 5.91 260.11 1.54 16.39 16 6 N -0.46 -19.53 4.61 -711.01 -3.28 -22.81 16 7 C 0.04 1.57 9.36 127.69 1.19 2.77 16 8 C 0.24 12.66 1.74 44.17 0.08 12.74 16 9 H -0.03 -1.57 7.89 -2.38 -0.02 -1.59 16 10 C -0.11 -6.09 8.81 71.98 0.63 -5.45 16 11 C -0.52 -28.02 7.81 25.60 0.20 -27.82 16 12 H 0.08 3.83 6.45 -2.91 -0.02 3.81 16 13 C 0.01 0.66 5.30 84.65 0.45 1.11 16 14 N -0.92 -54.07 11.32 21.44 0.24 -53.83 16 15 Si 0.97 42.49 29.54 68.60 2.03 44.51 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 19 N -0.47 -13.67 2.81 -514.86 -1.45 -15.12 16 20 C 0.11 1.76 5.85 86.38 0.51 2.26 16 21 C -0.14 -1.80 5.29 30.60 0.16 -1.64 16 22 C -0.15 -1.17 5.26 30.59 0.16 -1.01 16 23 C 0.45 6.18 3.16 71.98 0.23 6.41 16 24 F -0.20 -3.73 16.80 44.97 0.76 -2.98 16 25 F -0.19 -2.85 17.32 44.97 0.78 -2.08 16 26 F -0.19 -2.91 16.80 44.97 0.76 -2.16 16 27 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 29 H 0.11 0.83 7.59 -2.39 -0.02 0.81 16 30 H 0.01 0.32 8.11 -2.39 -0.02 0.30 16 31 H 0.09 3.53 5.96 -2.39 -0.01 3.52 16 32 H 0.09 2.48 6.15 -2.39 -0.01 2.47 16 33 H 0.01 0.60 6.40 -2.39 -0.02 0.59 16 34 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 3.72 6.07 -2.39 -0.01 3.70 16 36 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.14 1.10 8.07 -2.39 -0.02 1.08 16 38 H 0.10 1.87 8.09 -2.39 -0.02 1.85 16 39 H 0.06 1.17 5.82 -2.39 -0.01 1.16 16 40 H 0.09 1.06 7.41 -2.38 -0.02 1.04 16 41 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -77.57 352.75 6.66 -70.91 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.05 Total: 4.67 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.98 Total: 11.88 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -5.68 Total: -124.76 kcal Atomic # 9 Polarization: -9.50 SS G_CDS: 2.29 Total: -7.21 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -77.57 6.66 -70.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433271579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.376 kcal (2) G-P(sol) polarization free energy of solvation -77.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds