Wall clock time and date at job start Tue Mar 31 2020 14:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00229 * 2 1 4 4 C 1.52997 * 109.47501 * 184.61749 * 3 2 1 5 5 N 1.46907 * 109.47424 * 67.88393 * 4 3 2 6 6 C 1.46905 * 110.99816 * 286.93317 * 5 4 3 7 7 C 1.50704 * 109.46979 * 302.84823 * 6 5 4 8 8 H 1.07990 * 119.99780 * 2.64625 * 7 6 5 9 9 C 1.37877 * 119.99746 * 182.64244 * 7 6 5 10 10 N 1.31516 * 119.99791 * 5.20086 * 9 7 6 11 11 Si 1.86797 * 120.00165 * 185.20029 * 9 7 6 12 12 H 1.48501 * 109.46648 * 64.99976 * 11 9 7 13 13 H 1.48497 * 109.47167 * 185.00021 * 11 9 7 14 14 H 1.48503 * 109.46788 * 305.00360 * 11 9 7 15 15 C 1.38583 * 110.99970 * 162.97890 * 5 4 3 16 16 N 1.31210 * 126.47351 * 55.26619 * 15 5 4 17 17 N 1.28526 * 109.85925 * 179.97438 * 16 15 5 18 18 C 1.30296 * 110.05270 * 359.97438 * 17 16 15 19 19 C 1.50704 * 126.34787 * 180.02562 * 18 17 16 20 20 N 1.36453 * 126.47044 * 234.94613 * 15 5 4 21 21 C 1.46501 * 127.13677 * 0.04226 * 20 15 5 22 22 C 1.50703 * 109.47291 * 83.86207 * 21 20 15 23 23 C 1.34505 * 125.79340 * 89.99438 * 22 21 20 24 24 C 1.41378 * 106.84689 * 180.02562 * 23 22 21 25 25 C 1.34517 * 106.83649 * 0.02562 * 24 23 22 26 26 O 1.34301 * 108.42291 * 359.73793 * 25 24 23 27 27 H 1.08996 * 109.47461 * 184.89195 * 1 2 3 28 28 H 1.09007 * 109.47223 * 304.88939 * 1 2 3 29 29 H 1.09004 * 109.47365 * 64.88695 * 1 2 3 30 30 H 1.08992 * 109.47826 * 64.61292 * 3 2 1 31 31 H 1.09006 * 109.47167 * 304.61462 * 3 2 1 32 32 H 1.09001 * 109.47858 * 187.88653 * 4 3 2 33 33 H 1.09000 * 109.47308 * 307.88709 * 4 3 2 34 34 H 1.09001 * 109.46953 * 62.84885 * 6 5 4 35 35 H 1.08994 * 109.46942 * 182.84776 * 6 5 4 36 36 H 0.97006 * 119.99757 * 179.97438 * 10 9 7 37 37 H 1.09007 * 109.46814 * 89.97953 * 19 18 17 38 38 H 1.08992 * 109.47271 * 209.98205 * 19 18 17 39 39 H 1.09000 * 109.47085 * 329.98152 * 19 18 17 40 40 H 1.09002 * 109.47475 * 203.85862 * 21 20 15 41 41 H 1.09004 * 109.47261 * 323.86058 * 21 20 15 42 42 H 1.08006 * 126.57775 * 0.04356 * 23 22 21 43 43 H 1.08001 * 126.58239 * 179.97438 * 24 23 22 44 44 H 1.08002 * 125.78661 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5311 1.1865 -0.1161 5 7 3.8819 0.6709 -1.4462 6 6 3.5594 -0.7578 -1.5589 7 6 4.2785 -1.5219 -0.4771 8 1 4.8775 -0.9939 0.2498 9 6 4.1714 -2.8952 -0.4156 10 7 3.5271 -3.5474 -1.3585 11 14 4.9416 -3.8293 1.0070 12 1 4.2608 -3.4535 2.2721 13 1 4.7923 -5.2891 0.7792 14 1 6.3837 -3.4876 1.1004 15 6 5.2180 0.9025 -1.7321 16 7 6.2465 0.5324 -1.0062 17 7 7.3376 0.9120 -1.5694 18 6 7.0722 1.5412 -2.6791 19 6 8.0775 2.1397 -3.6290 20 7 5.7128 1.5532 -2.8247 21 6 4.9462 2.1447 -3.9242 22 6 4.4927 3.5277 -3.5334 23 6 5.1742 4.6680 -3.7444 24 6 4.3858 5.7191 -3.2225 25 6 3.2698 5.1581 -2.7232 26 8 3.3375 3.8312 -2.9191 27 1 -0.3634 -1.0239 0.0876 28 1 -0.3634 0.5878 0.8430 29 1 -0.3634 0.4362 -0.9305 30 1 1.7556 1.8166 0.9283 31 1 1.6247 1.8748 -0.8458 32 1 3.9841 2.1680 0.0242 33 1 3.9015 0.5029 0.6478 34 1 2.4839 -0.8973 -1.4487 35 1 3.8753 -1.1257 -2.5350 36 1 3.4521 -4.5136 -1.3154 37 1 8.3635 1.3951 -4.3720 38 1 7.6363 3.0016 -4.1294 39 1 8.9601 2.4552 -3.0725 40 1 5.5739 2.2059 -4.8132 41 1 4.0760 1.5233 -4.1359 42 1 6.1386 4.7625 -4.2214 43 1 4.6326 6.7705 -3.2237 44 1 2.4552 5.6859 -2.2496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519161091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:49 Heat of formation + Delta-G solvation = 77.946046 kcal Electronic energy + Delta-G solvation = -28502.970662 eV Core-core repulsion = 24653.153203 eV Total energy + Delta-G solvation = -3849.817459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.73497 -42.18200 -37.85364 -36.02677 -35.11940 -33.01317 -32.33272 -31.50534 -30.34738 -29.21408 -27.17408 -26.20320 -26.14787 -25.37865 -22.73066 -22.09080 -21.69613 -21.09607 -20.15476 -19.56663 -17.71508 -16.96015 -16.29446 -16.22248 -15.81205 -15.51800 -15.48142 -14.87877 -14.54630 -14.30083 -14.20727 -13.97365 -13.45435 -13.17619 -12.98167 -12.87361 -12.65369 -12.50525 -12.40673 -12.02624 -11.73543 -11.52842 -11.13853 -10.99719 -10.93223 -10.77296 -10.59193 -10.24841 -10.03323 -9.99246 -9.85810 -9.71089 -9.19854 -8.98005 -8.67350 -8.23379 -8.15115 -7.62453 -5.82593 -3.81637 1.49031 2.25626 2.41589 2.88137 3.04281 3.49907 3.50931 3.58776 3.60083 4.41403 4.47247 4.64629 4.66257 4.68008 4.74035 4.87255 4.96231 5.18861 5.30655 5.53111 5.53796 5.57096 5.63898 5.69984 5.73877 5.75660 5.82165 5.85834 5.92664 5.94358 6.05386 6.14329 6.18171 6.27974 6.36327 6.60383 6.75984 7.04981 7.06192 7.40659 7.72981 7.77646 7.83643 8.15907 8.32018 8.44502 9.23075 9.48855 9.81159 11.26506 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.005473 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.944945 B = 5114.832698 C = 6742.428442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.353 6.353 3 C 0.074 3.926 4 C 0.074 3.926 5 N -0.471 5.471 6 C 0.193 3.807 7 C -0.521 4.521 8 H 0.073 0.927 9 C 0.066 3.934 10 N -0.901 5.901 11 Si 0.887 3.113 12 H -0.279 1.279 13 H -0.292 1.292 14 H -0.276 1.276 15 C 0.390 3.610 16 N -0.288 5.288 17 N -0.293 5.293 18 C 0.152 3.848 19 C -0.058 4.058 20 N -0.476 5.476 21 C 0.197 3.803 22 C -0.025 4.025 23 C -0.193 4.193 24 C -0.220 4.220 25 C -0.031 4.031 26 O -0.155 6.155 27 H 0.081 0.919 28 H 0.029 0.971 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.021 0.979 36 H 0.258 0.742 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 18.585 -6.884 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C -0.004 4.004 4 C -0.053 4.053 5 N -0.197 5.197 6 C 0.070 3.930 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.542 5.542 11 Si 0.716 3.284 12 H -0.204 1.204 13 H -0.218 1.218 14 H -0.201 1.201 15 C 0.034 3.966 16 N -0.129 5.129 17 N -0.134 5.134 18 C -0.114 4.114 19 C -0.117 4.117 20 N -0.173 5.173 21 C 0.074 3.926 22 C -0.077 4.077 23 C -0.213 4.213 24 C -0.239 4.239 25 C -0.100 4.100 26 O -0.049 6.049 27 H 0.099 0.901 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.165 0.835 43 H 0.165 0.835 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.241 17.613 -6.063 18.669 hybrid contribution -0.113 -0.007 0.164 0.200 sum -1.355 17.605 -5.899 18.617 Atomic orbital electron populations 1.22647 0.83084 1.02172 0.98647 1.88326 1.17726 1.26275 1.94763 1.22418 0.93731 0.85515 0.98724 1.21974 0.93512 0.99122 0.90725 1.59579 1.07997 1.23402 1.28760 1.20157 0.99206 0.76788 0.96876 1.21676 1.28852 0.92105 1.13361 0.90952 1.24803 0.95359 0.97550 0.95809 1.69949 1.43588 1.07755 1.32862 0.86714 0.80104 0.78271 0.83330 1.20447 1.21755 1.20148 1.22682 0.93252 0.94696 0.85923 1.74919 0.94071 1.19068 1.24847 1.74014 1.21477 1.12580 1.05293 1.24599 0.82189 1.05220 0.99410 1.20092 0.95661 0.99703 0.96252 1.46376 1.06831 1.44046 1.20019 1.19912 0.97435 0.87536 0.87736 1.22406 0.86794 0.96537 1.01951 1.21610 1.01710 0.91641 1.06355 1.21793 0.96033 1.00489 1.05630 1.24115 1.01255 0.80761 1.03907 1.84138 1.36079 1.24836 1.59859 0.90073 0.95257 0.94880 0.93875 0.93426 0.92023 0.90246 0.90859 0.96083 0.93300 0.90135 0.91231 0.89139 0.86330 0.86693 0.83512 0.83511 0.78171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.11 7.83 -35.23 -0.28 -7.39 16 3 C 0.07 1.28 6.22 37.16 0.23 1.51 16 4 C 0.07 1.50 5.19 -3.82 -0.02 1.48 16 5 N -0.47 -10.26 4.69 -175.87 -0.83 -11.09 16 6 C 0.19 5.04 4.66 -4.97 -0.02 5.01 16 7 C -0.52 -14.97 7.30 -34.44 -0.25 -15.22 16 8 H 0.07 2.15 5.46 -52.49 -0.29 1.86 16 9 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 10 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 11 Si 0.89 23.32 29.54 -169.99 -5.02 18.30 16 12 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 14 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 15 C 0.39 8.55 6.14 -318.88 -1.96 6.59 16 16 N -0.29 -7.07 10.41 30.31 0.32 -6.75 16 17 N -0.29 -6.46 12.18 32.99 0.40 -6.06 16 18 C 0.15 2.64 8.07 -154.02 -1.24 1.40 16 19 C -0.06 -0.63 10.04 36.01 0.36 -0.27 16 20 N -0.48 -8.38 2.79 -115.36 -0.32 -8.70 16 21 C 0.20 2.60 6.50 -5.19 -0.03 2.56 16 22 C -0.03 -0.32 6.90 -35.63 -0.25 -0.57 16 23 C -0.19 -2.11 10.81 -39.71 -0.43 -2.54 16 24 C -0.22 -2.22 10.91 -39.70 -0.43 -2.65 16 25 C -0.03 -0.33 12.09 29.42 0.36 0.03 16 26 O -0.15 -2.11 10.65 5.70 0.06 -2.05 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 33 H 0.08 1.86 5.90 -51.93 -0.31 1.55 16 34 H 0.07 1.99 5.61 -51.93 -0.29 1.70 16 35 H 0.02 0.61 8.09 -51.93 -0.42 0.19 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.56 7.44 -51.93 -0.39 0.18 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.12 1.10 7.59 -51.93 -0.39 0.70 16 41 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 42 H 0.15 1.27 7.73 -52.48 -0.41 0.86 16 43 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.20 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -36.76 369.32 -8.30 -45.06 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.27 Total: -0.91 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.67 Total: 0.77 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.31 Total: -59.35 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.22 Total: -9.44 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.76 -8.30 -45.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519161091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.007 kcal (2) G-P(sol) polarization free energy of solvation -36.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds