Wall clock time and date at job start Tue Mar 31 2020 12:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46864 * 2 1 4 4 H 1.09005 * 109.47130 * 301.64771 * 3 2 1 5 5 N 1.46494 * 109.47541 * 61.64643 * 3 2 1 6 6 S 1.65597 * 120.00238 * 247.82705 * 5 3 2 7 7 O 1.42089 * 106.40564 * 45.51790 * 6 5 3 8 8 O 1.42101 * 106.40310 * 178.44082 * 6 5 3 9 9 N 1.65604 * 107.21740 * 291.97815 * 6 5 3 10 10 C 1.46505 * 119.99880 * 259.43565 * 9 6 5 11 11 C 1.52995 * 109.47474 * 92.19833 * 10 9 6 12 12 C 1.46497 * 120.00066 * 79.42842 * 9 6 5 13 13 C 1.50708 * 109.46987 * 95.00141 * 12 9 6 14 14 H 1.07999 * 119.99464 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00116 * 180.02562 * 13 12 9 16 16 N 1.31519 * 119.99963 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00074 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47370 * 89.99799 * 17 15 13 19 19 H 1.48500 * 109.47134 * 210.00143 * 17 15 13 20 20 H 1.48502 * 109.47063 * 330.00054 * 17 15 13 21 21 C 1.53007 * 109.47078 * 181.64998 * 3 2 1 22 22 H 1.08997 * 110.55036 * 66.42294 * 21 3 2 23 23 C 1.54994 * 110.61815 * 189.47560 * 21 3 2 24 24 C 1.54803 * 102.09329 * 155.52281 * 23 21 3 25 25 C 1.54101 * 104.18622 * 339.11902 * 24 23 21 26 26 O 1.43742 * 107.29340 * 357.97049 * 25 24 23 27 27 H 1.08997 * 109.47023 * 58.40504 * 1 2 3 28 28 H 1.09007 * 109.46665 * 178.39847 * 1 2 3 29 29 H 1.08993 * 109.47239 * 298.39659 * 1 2 3 30 30 H 1.09003 * 109.47127 * 239.99781 * 2 1 3 31 31 H 1.08995 * 109.47177 * 119.99865 * 2 1 3 32 32 H 0.97005 * 119.99833 * 67.81776 * 5 3 2 33 33 H 1.09006 * 109.46513 * 212.19824 * 10 9 6 34 34 H 1.08999 * 109.47140 * 332.19320 * 10 9 6 35 35 H 1.09004 * 109.46939 * 54.56907 * 11 10 9 36 36 H 1.08998 * 109.47215 * 174.57177 * 11 10 9 37 37 H 1.09004 * 109.47305 * 294.57604 * 11 10 9 38 38 H 1.08994 * 109.47291 * 215.00163 * 12 9 6 39 39 H 1.08998 * 109.46893 * 335.00677 * 12 9 6 40 40 H 0.96996 * 119.99447 * 180.02562 * 16 15 13 41 41 H 1.09001 * 110.90537 * 37.32014 * 23 21 3 42 42 H 1.09000 * 110.90432 * 273.72258 * 23 21 3 43 43 H 1.08996 * 110.49009 * 220.44146 * 24 23 21 44 44 H 1.09001 * 110.49183 * 97.79550 * 24 23 21 45 45 H 1.09002 * 109.88246 * 117.39683 * 25 24 23 46 46 H 1.09003 * 109.87701 * 238.39553 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6527 1.9648 -0.8749 5 7 1.5844 2.1216 1.2154 6 16 0.4758 3.3475 1.1130 7 8 -0.5409 2.8962 0.2289 8 8 0.2170 3.7669 2.4458 9 7 1.2204 4.6199 0.3586 10 6 1.7325 5.7421 1.1490 11 6 3.1990 5.4887 1.5041 12 6 1.3671 4.6233 -1.0990 13 6 0.2268 5.3908 -1.7168 14 1 -0.5311 5.8323 -1.0866 15 6 0.1511 5.5294 -3.0865 16 7 -0.8438 6.1997 -3.6256 17 14 1.4616 4.7653 -4.1764 18 1 1.0571 3.3842 -4.5429 19 1 1.6168 5.5792 -5.4088 20 1 2.7528 4.7249 -3.4440 21 6 3.5695 1.4427 -0.0415 22 1 3.9265 1.0436 -0.9909 23 6 4.1217 2.8713 0.1961 24 6 5.5407 2.5836 0.7438 25 6 5.4594 1.1341 1.2605 26 8 4.1081 0.6854 1.0633 27 1 -0.3633 0.5384 -0.8753 28 1 -0.3633 -1.0274 -0.0287 29 1 -0.3633 0.4887 0.9039 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.9320 1.8530 2.0803 33 1 1.6528 6.6614 0.5688 34 1 1.1485 5.8383 2.0643 35 1 3.7655 5.2968 0.5928 36 1 3.6074 6.3646 2.0082 37 1 3.2689 4.6240 2.1641 38 1 2.3115 5.0964 -1.3680 39 1 1.3566 3.5976 -1.4675 40 1 -0.8972 6.2968 -4.5892 41 1 3.5205 3.4030 0.9336 42 1 4.1713 3.4296 -0.7388 43 1 5.7808 3.2663 1.5588 44 1 6.2806 2.6637 -0.0527 45 1 6.1459 0.5010 0.6983 46 1 5.7114 1.1038 2.3206 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336952486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:25 Heat of formation + Delta-G solvation = -147.882939 kcal Electronic energy + Delta-G solvation = -28496.872301 eV Core-core repulsion = 24740.413363 eV Total energy + Delta-G solvation = -3756.458938 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.64601 -38.37397 -37.80329 -37.21860 -36.79985 -34.66015 -33.09609 -32.47171 -31.81766 -30.42194 -28.91509 -26.55995 -24.65862 -23.35003 -23.16829 -21.86856 -21.72629 -20.48012 -19.17534 -18.64395 -18.25282 -17.73886 -17.25354 -16.82134 -16.46371 -16.14646 -15.58501 -15.48254 -15.22702 -14.73335 -14.61274 -14.53755 -14.34287 -14.11824 -13.85421 -13.54831 -13.37808 -13.26067 -13.24570 -13.04357 -12.81846 -12.72723 -12.69071 -12.42560 -12.18747 -12.16144 -12.04094 -11.95059 -11.79402 -11.72832 -11.64926 -11.59799 -11.25664 -10.74160 -10.58716 -10.31923 -9.75375 -8.24464 -6.29668 -0.33310 1.37792 1.42119 1.50116 2.04891 2.38084 2.62301 2.94582 3.09184 3.43326 3.53438 3.80946 3.90830 4.04094 4.13893 4.18788 4.22700 4.32959 4.39035 4.44944 4.49159 4.55876 4.68779 4.72424 4.76060 4.86265 4.91429 4.98105 5.02142 5.04094 5.06203 5.09527 5.13403 5.23230 5.33913 5.37293 5.43800 5.47169 5.52293 5.54725 5.77548 6.04476 6.20058 6.36822 6.74437 7.32612 8.93420 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011734 B = 0.006433 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.743627 B = 4351.313120 C = 4543.881375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.152 3.848 4 H 0.087 0.913 5 N -1.100 6.100 6 S 2.788 3.212 7 O -0.999 6.999 8 O -1.015 7.015 9 N -0.991 5.991 10 C 0.110 3.890 11 C -0.167 4.167 12 C 0.241 3.759 13 C -0.536 4.536 14 H 0.025 0.975 15 C 0.005 3.995 16 N -0.951 5.951 17 Si 0.936 3.064 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.220 1.220 21 C 0.073 3.927 22 H 0.093 0.907 23 C -0.177 4.177 24 C -0.147 4.147 25 C 0.043 3.957 26 O -0.381 6.381 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.424 0.576 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.033 0.967 40 H 0.265 0.735 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.868 -10.905 8.698 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.044 3.956 4 H 0.105 0.895 5 N -0.862 5.862 6 S 2.796 3.204 7 O -0.982 6.982 8 O -0.999 6.999 9 N -0.831 5.831 10 C -0.016 4.016 11 C -0.226 4.226 12 C 0.116 3.884 13 C -0.575 4.575 14 H 0.043 0.957 15 C -0.192 4.192 16 N -0.592 5.592 17 Si 0.757 3.243 18 H -0.191 1.191 19 H -0.211 1.211 20 H -0.142 1.142 21 C 0.014 3.986 22 H 0.110 0.890 23 C -0.214 4.214 24 C -0.185 4.185 25 C -0.034 4.034 26 O -0.300 6.300 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.260 0.740 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.714 -10.965 8.814 21.846 hybrid contribution 0.056 0.323 -0.663 0.739 sum 16.770 -10.641 8.151 21.469 Atomic orbital electron populations 1.21804 0.96488 1.01556 1.01319 1.21780 0.95168 0.94942 1.04055 1.21107 0.93224 0.94932 0.86295 0.89477 1.55685 1.63707 1.51423 1.15416 1.01514 0.73902 0.73100 0.71837 1.93611 1.55858 1.81427 1.67279 1.93500 1.85102 1.82692 1.38633 1.57460 1.76358 1.33951 1.15373 1.21354 0.95790 0.89654 0.94797 1.22432 0.95003 1.02874 1.02278 1.19227 0.96627 0.96445 0.76052 1.21706 1.09663 1.33848 0.92324 0.95707 1.25945 0.98248 0.95350 0.99668 1.70091 1.33727 1.43462 1.11908 0.85903 0.80991 0.78840 0.78552 1.19073 1.21058 1.14223 1.23476 0.92204 0.91531 0.91430 0.88961 1.23676 0.97388 0.97053 1.03287 1.22885 0.96713 0.96964 1.01944 1.23271 0.83725 0.94305 1.02054 1.88830 1.27585 1.61887 1.51724 0.93873 0.91225 0.94560 0.89343 0.89864 0.73986 0.90545 0.90902 0.90971 0.89613 0.92072 0.92535 0.94881 0.92580 0.89058 0.90095 0.89715 0.89746 0.91592 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 8.74 71.98 0.63 -3.78 16 2 C -0.12 -2.83 5.44 30.60 0.17 -2.66 16 3 C 0.15 3.91 2.31 44.99 0.10 4.01 16 4 H 0.09 2.59 5.34 -2.38 -0.01 2.58 16 5 N -1.10 -30.51 3.46 -169.39 -0.59 -31.09 16 6 S 2.79 106.30 5.91 -56.49 -0.33 105.96 16 7 O -1.00 -46.77 15.12 -128.00 -1.94 -48.70 16 8 O -1.01 -41.53 16.58 -128.00 -2.12 -43.65 16 9 N -0.99 -37.36 2.52 -519.84 -1.31 -38.68 16 10 C 0.11 3.52 6.32 86.38 0.55 4.06 16 11 C -0.17 -3.78 8.63 71.98 0.62 -3.16 16 12 C 0.24 10.22 4.17 85.64 0.36 10.58 16 13 C -0.54 -30.14 9.94 25.60 0.25 -29.89 16 14 H 0.02 1.61 8.06 -2.91 -0.02 1.58 16 15 C 0.01 0.29 5.47 84.65 0.46 0.76 16 16 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 17 Si 0.94 40.50 27.47 68.60 1.88 42.38 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.22 -7.88 6.54 99.48 0.65 -7.23 16 21 C 0.07 1.49 3.23 31.28 0.10 1.59 16 22 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 23 C -0.18 -3.46 5.38 31.89 0.17 -3.29 16 24 C -0.15 -2.09 7.01 31.58 0.22 -1.87 16 25 C 0.04 0.63 7.70 72.35 0.56 1.18 16 26 O -0.38 -7.57 10.34 -148.98 -1.54 -9.11 16 27 H 0.04 1.44 7.88 -2.39 -0.02 1.42 16 28 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.04 1.13 7.04 -2.39 -0.02 1.11 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.08 1.81 7.70 -2.39 -0.02 1.79 16 32 H 0.42 10.03 8.82 -96.74 -0.85 9.18 16 33 H 0.08 2.60 8.09 -2.38 -0.02 2.58 16 34 H 0.07 2.39 6.95 -2.39 -0.02 2.37 16 35 H 0.07 1.55 6.70 -2.38 -0.02 1.53 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.28 6.87 -2.38 -0.02 1.26 16 38 H 0.06 2.16 7.17 -2.39 -0.02 2.14 16 39 H 0.03 1.36 4.93 -2.39 -0.01 1.35 16 40 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.09 1.95 2.88 -2.39 -0.01 1.94 16 42 H 0.08 1.63 8.13 -2.39 -0.02 1.61 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -75.00 360.44 -1.38 -76.38 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.07 Total: 28.30 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 4.19 Total: -22.46 kcal Atomic # 7 Polarization: -127.50 SS G_CDS: -1.60 Total: -129.10 kcal Atomic # 8 Polarization: -95.87 SS G_CDS: -5.60 Total: -101.47 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.88 Total: 42.38 kcal Atomic # 16 Polarization: 106.30 SS G_CDS: -0.33 Total: 105.96 kcal Total: -75.00 -1.38 -76.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336952486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.498 kcal (2) G-P(sol) polarization free energy of solvation -75.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds