Wall clock time and date at job start Tue Mar 31 2020 12:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47042 * 2 1 4 4 C 1.52995 * 109.47342 * 240.00060 * 2 1 3 5 5 C 1.50700 * 109.47244 * 59.99572 * 4 2 1 6 6 H 1.07999 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99751 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00289 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99795 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47024 * 60.00465 * 9 7 5 11 11 H 1.48501 * 109.47285 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47279 * 300.00400 * 9 7 5 13 13 C 1.53005 * 109.47378 * 119.99524 * 2 1 3 14 14 N 1.46496 * 109.47144 * 300.00430 * 13 2 1 15 15 C 1.34774 * 120.00091 * 179.97438 * 14 13 2 16 16 O 1.21574 * 120.00059 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00439 * 179.97438 * 15 14 13 18 18 C 1.39366 * 120.00453 * 174.91090 * 17 15 14 19 19 C 1.39406 * 119.63517 * 185.08206 * 18 17 15 20 20 C 1.38296 * 119.29933 * 179.97438 * 19 18 17 21 21 C 1.38801 * 118.57309 * 0.02562 * 20 19 18 22 22 C 1.39139 * 119.20595 * 359.97438 * 21 20 19 23 23 C 1.48157 * 119.67938 * 180.02562 * 22 21 20 24 24 N 1.34776 * 119.99873 * 180.02562 * 23 22 21 25 25 O 1.21512 * 119.99990 * 0.02562 * 23 22 21 26 26 N 1.32005 * 119.62683 * 4.80587 * 18 17 15 27 27 H 1.09002 * 109.47405 * 300.00098 * 1 2 3 28 28 H 1.08999 * 109.47460 * 60.00455 * 1 2 3 29 29 H 1.09003 * 109.46911 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47715 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47079 * 299.99784 * 3 2 1 32 32 H 1.09002 * 109.47101 * 59.99715 * 3 2 1 33 33 H 1.09003 * 109.46996 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.46841 * 299.99704 * 4 2 1 35 35 H 0.97005 * 120.00176 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47111 * 180.02562 * 13 2 1 37 37 H 1.09003 * 109.46938 * 60.00215 * 13 2 1 38 38 H 0.96999 * 120.00248 * 0.27413 * 14 13 2 39 39 H 0.97000 * 119.99624 * 354.91733 * 17 15 14 40 40 H 1.08001 * 120.34587 * 359.95727 * 19 18 17 41 41 H 1.08005 * 120.71687 * 180.02562 * 20 19 18 42 42 H 1.07992 * 120.39826 * 179.97438 * 21 20 19 43 43 H 0.97002 * 120.00230 * 359.97438 * 24 23 22 44 44 H 0.96996 * 119.99795 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9170 0.8674 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6257 -1.5521 -3.8525 9 14 1.2470 0.3978 -5.2572 10 1 1.7420 1.7979 -5.2578 11 1 1.7422 -0.3022 -6.4697 12 1 -0.2380 0.3977 -5.2566 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8769 -0.4912 3.6695 16 8 2.5759 -1.4796 3.7812 17 7 1.4280 0.1444 4.7700 18 6 1.6746 -0.3905 6.0331 19 6 1.1173 0.2144 7.1587 20 6 1.3661 -0.3225 8.4086 21 6 2.1678 -1.4520 8.4984 22 6 2.6928 -2.0061 7.3350 23 6 3.5494 -3.2121 7.4186 24 7 4.0617 -3.7538 6.2959 25 8 3.7900 -3.7127 8.4993 26 7 2.4288 -1.4675 6.1497 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 -0.7216 -1.2489 34 1 1.6767 -1.7489 -1.2491 35 1 2.8595 -1.8839 -4.7335 36 1 3.1301 -0.7207 1.2495 37 1 1.6767 -1.7489 1.2494 38 1 0.9907 0.7557 2.3564 39 1 0.9333 0.9742 4.6829 40 1 0.4980 1.0932 7.0556 41 1 0.9456 0.1274 9.2959 42 1 2.3816 -1.8954 9.4596 43 1 3.8693 -3.3544 5.4331 44 1 4.6222 -4.5436 6.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350160839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:32 Heat of formation + Delta-G solvation = -31.082059 kcal Electronic energy + Delta-G solvation = -26349.457919 eV Core-core repulsion = 22494.912646 eV Total energy + Delta-G solvation = -3854.545272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19021 -39.91181 -38.80014 -37.28659 -34.95627 -33.96390 -33.68452 -32.51137 -32.12856 -30.31251 -27.17090 -26.57581 -26.30881 -25.23946 -23.79932 -22.67671 -21.33291 -20.83421 -19.01937 -18.67647 -17.69495 -17.09470 -16.95787 -16.38431 -16.28896 -15.84142 -15.40842 -15.08595 -14.99171 -14.50506 -14.29619 -14.12097 -14.05656 -13.48517 -13.45868 -13.13317 -12.81287 -12.48760 -12.28079 -12.09690 -11.28837 -11.05880 -10.94249 -10.92328 -10.84229 -10.67520 -10.45986 -10.31582 -10.27291 -10.20550 -9.93072 -9.76333 -9.44124 -9.23477 -8.98691 -8.89807 -8.48416 -8.39280 -6.03429 -4.05044 0.38075 0.98563 2.32310 2.51907 3.21696 3.25135 3.29121 3.35048 3.35785 3.74767 3.85198 4.25714 4.42171 4.48289 4.66454 4.75139 4.96513 5.13463 5.32005 5.39737 5.54640 5.56828 5.67851 5.79814 5.89302 6.10055 6.10697 6.17344 6.33455 6.39659 6.48313 6.56065 6.56944 6.68093 6.70993 7.00032 7.01835 7.07006 7.22115 7.53891 7.59565 7.71530 7.94608 7.97732 8.12974 8.36054 8.58390 8.99447 9.58245 11.07936 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.002366 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.058179 B =11831.082201 C =12739.293904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.147 3.853 14 N -0.731 5.731 15 C 0.691 3.309 16 O -0.536 6.536 17 N -0.672 5.672 18 C 0.385 3.615 19 C -0.188 4.188 20 C -0.052 4.052 21 C -0.150 4.150 22 C 0.107 3.893 23 C 0.580 3.420 24 N -0.830 5.830 25 O -0.545 6.545 26 N -0.450 5.450 27 H 0.027 0.973 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.394 0.606 39 H 0.413 0.587 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.422 0.578 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.048 5.478 22.254 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.024 3.976 14 N -0.387 5.387 15 C 0.390 3.610 16 O -0.408 6.408 17 N -0.321 5.321 18 C 0.150 3.850 19 C -0.212 4.212 20 C -0.078 4.078 21 C -0.172 4.172 22 C -0.032 4.032 23 C 0.362 3.638 24 N -0.393 5.393 25 O -0.422 6.422 26 N -0.167 5.167 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.229 0.771 39 H 0.250 0.750 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.254 0.746 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -2.889 3.830 22.047 22.563 hybrid contribution -1.095 1.569 -0.841 2.091 sum -3.984 5.399 21.206 22.242 Atomic orbital electron populations 1.21760 0.95268 1.01197 1.00162 1.20920 0.95473 0.95882 0.94981 1.21759 1.00591 0.95869 1.00164 1.19084 0.96394 0.95242 0.89371 1.21127 1.31352 1.12104 0.90509 0.92331 1.25008 0.95288 0.95067 0.99083 1.69947 1.36844 1.22923 1.23609 0.86713 0.79139 0.79762 0.82686 1.20335 1.21386 1.20330 1.21561 0.98825 0.95705 0.81543 1.45441 1.55620 1.33365 1.04311 1.16050 0.81137 0.83499 0.80288 1.90965 1.39280 1.25737 1.84785 1.42802 1.58646 1.27537 1.03093 1.18053 0.92061 0.90316 0.84616 1.21658 1.04260 1.03272 0.92001 1.21358 0.95025 0.94105 0.97333 1.22004 0.98481 0.96913 0.99845 1.20962 0.97576 0.95891 0.88786 1.17839 0.79077 0.82591 0.84251 1.43760 1.52394 1.32584 1.10522 1.90810 1.60684 1.62568 1.28163 1.67515 1.13912 1.09749 1.25531 0.95361 0.91420 0.93326 0.93319 0.91426 0.95358 0.96291 0.96292 0.92937 0.91725 0.91754 0.77082 0.75024 0.84063 0.83647 0.83456 0.74570 0.76635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.05 37.16 0.30 -1.77 16 2 C -0.07 -1.27 0.54 -154.51 -0.08 -1.36 16 3 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 4 C 0.04 0.86 4.04 -27.89 -0.11 0.75 16 5 C -0.51 -13.19 7.65 -34.44 -0.26 -13.46 16 6 H 0.06 1.44 5.68 -52.49 -0.30 1.14 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 9 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.15 2.39 4.56 -4.04 -0.02 2.37 16 14 N -0.73 -9.40 4.96 -65.23 -0.32 -9.72 16 15 C 0.69 9.51 8.52 -86.92 -0.74 8.76 16 16 O -0.54 -9.31 14.60 5.30 0.08 -9.23 16 17 N -0.67 -6.66 5.39 -15.80 -0.09 -6.74 16 18 C 0.38 4.18 7.42 -154.90 -1.15 3.03 16 19 C -0.19 -1.37 9.94 -39.13 -0.39 -1.76 16 20 C -0.05 -0.36 10.16 -39.35 -0.40 -0.76 16 21 C -0.15 -1.43 9.63 -39.04 -0.38 -1.81 16 22 C 0.11 1.32 6.75 -83.02 -0.56 0.76 16 23 C 0.58 7.63 8.08 -12.19 -0.10 7.53 16 24 N -0.83 -9.36 8.86 30.60 0.27 -9.09 16 25 O -0.55 -8.27 17.15 5.36 0.09 -8.18 16 26 N -0.45 -5.96 7.06 -8.93 -0.06 -6.02 16 27 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 28 H 0.07 1.21 6.62 -51.93 -0.34 0.86 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 32 H 0.03 0.36 6.87 -51.93 -0.36 0.00 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.39 4.05 6.18 -40.82 -0.25 3.80 16 39 H 0.41 2.41 8.72 -40.82 -0.36 2.06 16 40 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.15 0.51 8.06 -52.48 -0.42 0.09 16 42 H 0.15 1.28 7.63 -52.49 -0.40 0.88 16 43 H 0.42 5.17 8.16 -40.82 -0.33 4.83 16 44 H 0.40 3.66 8.93 -40.82 -0.36 3.29 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -33.63 366.55 -8.40 -42.04 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.92 Total: 8.88 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -3.69 Total: 1.98 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.54 Total: -56.75 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.17 Total: -17.41 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.63 -8.40 -42.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350160839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.954 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds