Wall clock time and date at job start Tue Mar 31 2020 12:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47293 * 2 1 4 4 C 1.50702 * 109.46855 * 240.00303 * 2 1 3 5 5 H 1.07995 * 119.99598 * 239.18185 * 4 2 1 6 6 C 1.37875 * 120.00328 * 59.18584 * 4 2 1 7 7 N 1.31508 * 120.00151 * 191.77218 * 6 4 2 8 8 Si 1.86798 * 119.99928 * 11.76488 * 6 4 2 9 9 H 1.48501 * 109.47114 * 92.02090 * 8 6 4 10 10 H 1.48496 * 109.47409 * 212.02475 * 8 6 4 11 11 H 1.48508 * 109.47428 * 332.02364 * 8 6 4 12 12 C 1.52992 * 109.47243 * 120.00268 * 2 1 3 13 13 N 1.46503 * 109.47388 * 299.99579 * 12 2 1 14 14 C 1.34770 * 120.00494 * 179.97438 * 13 12 2 15 15 O 1.21595 * 119.99944 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00180 * 180.02562 * 14 13 12 17 17 C 1.46508 * 119.99930 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47046 * 179.97438 * 17 16 14 19 19 O 1.21289 * 120.00094 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99912 * 180.27325 * 18 17 16 21 21 C 1.39952 * 119.99661 * 174.49627 * 20 18 17 22 22 C 1.39279 * 120.49012 * 327.69057 * 21 20 18 23 23 C 1.38504 * 118.35923 * 179.73713 * 22 21 20 24 24 C 1.38274 * 119.23805 * 0.54297 * 23 22 21 25 25 N 1.31847 * 120.91744 * 359.72203 * 24 23 22 26 26 C 1.31822 * 121.80020 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.46873 * 307.94486 * 1 2 3 28 28 H 1.08999 * 109.47900 * 67.94335 * 1 2 3 29 29 H 1.08997 * 109.47656 * 187.95029 * 1 2 3 30 30 H 1.09000 * 109.47639 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47103 * 300.00383 * 3 2 1 32 32 H 1.09002 * 109.47257 * 60.00030 * 3 2 1 33 33 H 0.97006 * 120.00267 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.47162 * 179.97438 * 12 2 1 35 35 H 1.08999 * 109.47387 * 60.00139 * 12 2 1 36 36 H 0.96997 * 119.99377 * 0.02562 * 13 12 2 37 37 H 0.96999 * 120.00269 * 359.97438 * 16 14 13 38 38 H 1.09004 * 109.47170 * 59.99410 * 17 16 14 39 39 H 1.09000 * 109.46912 * 300.00027 * 17 16 14 40 40 H 0.96990 * 119.99865 * 354.49284 * 20 18 17 41 41 H 1.08002 * 120.82126 * 0.02562 * 22 21 20 42 42 H 1.08010 * 120.37957 * 180.26238 * 23 22 21 43 43 H 1.08000 * 119.54277 * 179.74436 * 24 23 22 44 44 H 1.07993 * 119.67477 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6639 -1.5807 -1.1315 6 6 1.6853 -0.2492 -2.4827 7 7 1.9228 -0.9878 -3.5446 8 14 0.8779 1.4247 -2.6709 9 1 1.9223 2.4552 -2.9003 10 1 -0.0535 1.3979 -3.8272 11 1 0.1228 1.7520 -1.4347 12 6 2.0399 -0.7213 1.2491 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6694 15 8 2.5759 -1.4801 3.7810 16 7 1.4273 0.1436 4.7699 17 6 1.7813 -0.3570 6.1005 18 6 1.1577 0.5250 7.1513 19 8 0.4843 1.4783 6.8213 20 7 1.3533 0.2581 8.4578 21 6 0.8720 1.1403 9.4319 22 6 0.8123 2.5086 9.1785 23 6 0.3233 3.3408 10.1718 24 6 -0.0758 2.7923 11.3767 25 7 -0.0015 1.4929 11.5872 26 6 0.4520 0.6649 10.6670 27 1 -0.3633 0.6320 0.8105 28 1 -0.3635 0.3859 -0.9524 29 1 -0.3634 -1.0177 0.1421 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6784 -0.6635 -4.4255 34 1 3.1300 -0.7217 1.2489 35 1 1.6767 -1.7489 1.2491 36 1 0.9938 0.7578 2.3564 37 1 0.8700 0.9325 4.6810 38 1 2.8652 -0.3481 6.2156 39 1 1.4122 -1.3761 6.2153 40 1 1.8275 -0.5453 8.7229 41 1 1.1350 2.9102 8.2293 42 1 0.2587 4.4066 10.0087 43 1 -0.4541 3.4372 12.1561 44 1 0.4984 -0.3935 10.8763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458195281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:52 Heat of formation + Delta-G solvation = -32.809902 kcal Electronic energy + Delta-G solvation = -25922.108320 eV Core-core repulsion = 22067.488123 eV Total energy + Delta-G solvation = -3854.620197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.01413 -41.10031 -40.20198 -38.51532 -36.37689 -35.47286 -34.96911 -33.41269 -33.13132 -31.44047 -29.00695 -27.97245 -27.26548 -26.56254 -24.89083 -24.14630 -22.06715 -21.74269 -20.90847 -19.98140 -19.02532 -18.08181 -17.93026 -17.85648 -17.28355 -17.12416 -17.02488 -16.70231 -16.07967 -15.71764 -15.37704 -15.06184 -14.95537 -14.85790 -14.78030 -14.50233 -14.30703 -14.08192 -13.93969 -13.74512 -13.73948 -13.11172 -12.89905 -12.37196 -12.11957 -12.08104 -11.95765 -11.72747 -11.48048 -11.39713 -11.02087 -10.71616 -10.62770 -10.41421 -10.40326 -10.29557 -9.76127 -9.38849 -8.27662 -6.30009 -0.00994 0.26009 1.32281 1.38159 1.38966 1.39674 1.50878 2.05366 2.15914 2.36839 2.83921 3.08853 3.31908 3.39626 3.63212 3.84585 3.97170 4.10352 4.10923 4.31376 4.33587 4.36108 4.38023 4.44200 4.67860 4.78985 4.87066 4.87999 4.96785 4.99641 5.09951 5.13578 5.18340 5.20549 5.30227 5.45479 5.58086 5.73271 5.74773 5.80998 5.98201 6.16064 6.33114 6.74742 6.82881 6.96464 7.08092 7.35120 7.57197 8.89247 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031175 B = 0.002084 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.947462 B =13429.677452 C =14059.977687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.026 3.974 3 C -0.144 4.144 4 C -0.512 4.512 5 H 0.029 0.971 6 C 0.014 3.986 7 N -0.948 5.948 8 Si 0.933 3.067 9 H -0.286 1.286 10 H -0.314 1.314 11 H -0.190 1.190 12 C 0.177 3.823 13 N -0.726 5.726 14 C 0.705 3.295 15 O -0.632 6.632 16 N -0.731 5.731 17 C 0.123 3.877 18 C 0.520 3.480 19 O -0.546 6.546 20 N -0.649 5.649 21 C 0.088 3.912 22 C -0.098 4.098 23 C -0.151 4.151 24 C 0.073 3.927 25 N -0.491 5.491 26 C 0.075 3.925 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.263 0.737 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.407 0.593 37 H 0.412 0.588 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.435 0.565 41 H 0.137 0.863 42 H 0.160 0.840 43 H 0.181 0.819 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 9.189 31.110 32.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.025 3.975 3 C -0.201 4.201 4 C -0.550 4.550 5 H 0.048 0.952 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.762 3.238 9 H -0.214 1.214 10 H -0.243 1.243 11 H -0.114 1.114 12 C 0.053 3.947 13 N -0.382 5.382 14 C 0.404 3.596 15 O -0.514 6.514 16 N -0.391 5.391 17 C -0.004 4.004 18 C 0.308 3.692 19 O -0.423 6.423 20 N -0.296 5.296 21 C -0.008 4.008 22 C -0.126 4.126 23 C -0.171 4.171 24 C -0.084 4.084 25 N -0.200 5.200 26 C -0.085 4.085 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.244 0.756 37 H 0.250 0.750 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.275 0.725 41 H 0.154 0.846 42 H 0.178 0.822 43 H 0.198 0.802 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.110 8.573 31.563 32.964 hybrid contribution 0.097 0.833 -1.854 2.035 sum -4.013 9.406 29.709 31.419 Atomic orbital electron populations 1.22293 0.96161 1.00702 1.00890 1.18676 0.93729 0.93249 0.91868 1.22259 1.00954 0.96713 1.00180 1.21023 1.30918 1.12663 0.90442 0.95231 1.25869 0.96008 1.01129 0.95312 1.70103 1.50379 1.38866 0.99393 0.86595 0.78933 0.79870 0.78410 1.21392 1.24289 1.11377 1.20903 0.97221 0.94624 0.81985 1.45117 1.55940 1.33330 1.03765 1.15924 0.80136 0.82507 0.80998 1.90899 1.44649 1.29269 1.86579 1.44611 1.57205 1.33826 1.03432 1.20949 1.02104 0.97878 0.79486 1.20813 0.79446 0.85219 0.83695 1.90725 1.39155 1.30887 1.81492 1.43139 1.56598 1.26133 1.03764 1.18903 1.00233 0.90501 0.91183 1.21782 0.98105 0.92173 1.00519 1.22370 0.98707 1.02510 0.93477 1.23199 0.96785 0.91337 0.97065 1.67703 1.13713 1.05543 1.33001 1.22979 0.95838 1.01177 0.88488 0.91691 0.93453 0.93979 0.93478 0.94643 0.91080 0.92793 0.93853 0.94054 0.75588 0.74952 0.86645 0.86716 0.72468 0.84558 0.82191 0.80178 0.80108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 7.46 71.98 0.54 -4.83 16 2 C 0.03 1.09 0.50 -52.93 -0.03 1.06 16 3 C -0.14 -5.31 7.60 71.98 0.55 -4.76 16 4 C -0.51 -27.99 8.62 25.60 0.22 -27.77 16 5 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 6 C 0.01 0.78 5.36 84.65 0.45 1.24 16 7 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 8 Si 0.93 42.08 22.85 68.60 1.57 43.65 16 9 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 10 H -0.31 -14.65 7.11 99.48 0.71 -13.94 16 11 H -0.19 -7.15 4.32 99.48 0.43 -6.72 16 12 C 0.18 6.93 4.50 86.38 0.39 7.32 16 13 N -0.73 -21.87 5.00 -478.54 -2.40 -24.26 16 14 C 0.70 21.15 8.57 179.06 1.53 22.69 16 15 O -0.63 -23.98 16.34 -4.02 -0.07 -24.04 16 16 N -0.73 -15.50 5.53 -482.28 -2.67 -18.16 16 17 C 0.12 1.84 6.16 85.63 0.53 2.37 16 18 C 0.52 7.56 7.67 87.66 0.67 8.23 16 19 O -0.55 -11.49 13.33 -3.06 -0.04 -11.53 16 20 N -0.65 -6.19 5.36 -303.19 -1.62 -7.82 16 21 C 0.09 1.19 6.32 38.24 0.24 1.43 16 22 C -0.10 -1.49 8.77 22.58 0.20 -1.30 16 23 C -0.15 -1.80 10.10 22.34 0.23 -1.57 16 24 C 0.07 0.90 11.18 84.70 0.95 1.84 16 25 N -0.49 -7.62 10.35 -195.32 -2.02 -9.65 16 26 C 0.07 0.94 11.12 84.84 0.94 1.88 16 27 H 0.06 1.89 7.09 -2.38 -0.02 1.87 16 28 H 0.05 1.87 3.84 -2.39 -0.01 1.86 16 29 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.04 1.36 2.58 -2.39 -0.01 1.35 16 32 H 0.07 2.01 6.86 -2.39 -0.02 2.00 16 33 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 34 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.41 10.00 6.25 -92.71 -0.58 9.42 16 37 H 0.41 7.92 7.45 -92.71 -0.69 7.23 16 38 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.43 1.01 8.82 -92.72 -0.82 0.20 16 41 H 0.14 2.35 6.45 -2.91 -0.02 2.33 16 42 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 43 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -78.45 353.85 -0.83 -79.28 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -1.29 Total: 23.20 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 7.41 Total: 7.83 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -8.41 Total: -118.39 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -0.11 Total: -35.57 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.57 Total: 43.65 kcal Total: -78.45 -0.83 -79.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458195281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.470 kcal (2) G-P(sol) polarization free energy of solvation -78.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds