Wall clock time and date at job start Tue Mar 31 2020 12:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50692 * 119.99770 * 2 1 4 4 N 1.46499 * 109.47308 * 125.00077 * 3 2 1 5 5 C 1.46507 * 120.00171 * 268.44083 * 4 3 2 6 6 C 1.50699 * 109.47268 * 264.99713 * 5 4 3 7 7 H 1.08001 * 119.99603 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99676 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00291 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99592 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46971 * 90.00123 * 10 8 6 12 12 H 1.48504 * 109.46997 * 209.99929 * 10 8 6 13 13 H 1.48501 * 109.47003 * 330.00069 * 10 8 6 14 14 C 1.34776 * 120.00370 * 88.43795 * 4 3 2 15 15 O 1.21364 * 119.99444 * 354.55782 * 14 4 3 16 16 C 1.49319 * 120.00388 * 174.83497 * 14 4 3 17 17 O 1.21404 * 120.00087 * 353.92987 * 16 14 4 18 18 N 1.34776 * 120.00292 * 173.93733 * 16 14 4 19 19 C 1.40484 * 120.00348 * 179.97438 * 18 16 14 20 20 C 1.40331 * 126.10923 * 359.68762 * 19 18 16 21 21 N 1.30832 * 108.20734 * 179.81818 * 20 19 18 22 22 N 1.40056 * 108.36225 * 0.44197 * 21 20 19 23 23 C 1.46504 * 125.99570 * 179.72113 * 22 21 20 24 24 C 1.52997 * 109.47186 * 94.99519 * 23 22 21 25 25 C 1.52995 * 109.46996 * 214.99945 * 23 22 21 26 26 C 1.35230 * 108.01296 * 359.71263 * 22 21 20 27 27 H 1.08001 * 120.00453 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.99914 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.00203 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47187 * 5.00109 * 3 2 1 31 31 H 1.09000 * 109.47446 * 244.99873 * 3 2 1 32 32 H 1.09001 * 109.46455 * 24.99839 * 5 4 3 33 33 H 1.09003 * 109.46979 * 144.99524 * 5 4 3 34 34 H 0.97005 * 120.00205 * 179.97438 * 9 8 6 35 35 H 0.97003 * 119.99607 * 359.97438 * 18 16 14 36 36 H 1.07996 * 125.90293 * 359.97438 * 20 19 18 37 37 H 1.09004 * 109.46728 * 334.99542 * 23 22 21 38 38 H 1.08995 * 109.47306 * 60.00078 * 24 23 22 39 39 H 1.09006 * 109.46943 * 180.02562 * 24 23 22 40 40 H 1.08998 * 109.47179 * 300.00097 * 24 23 22 41 41 H 1.08997 * 109.47231 * 179.97438 * 25 23 22 42 42 H 1.09004 * 109.47052 * 299.99397 * 25 23 22 43 43 H 1.08998 * 109.47417 * 59.99685 * 25 23 22 44 44 H 1.07995 * 126.17971 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5697 1.8963 2.4152 6 6 2.9958 3.3396 2.4948 7 1 3.5295 3.7912 1.6715 8 6 2.7043 4.0834 3.6184 9 7 2.0549 3.5333 4.6210 10 14 3.2331 5.8723 3.7174 11 1 2.1577 6.7374 3.1694 12 1 3.4869 6.2358 5.1347 13 1 4.4752 6.0657 2.9266 14 6 4.2396 0.8374 0.9914 15 8 4.5594 0.2812 -0.0388 16 6 5.2246 0.9684 2.1059 17 8 4.9412 1.6150 3.0936 18 7 6.4283 0.3691 2.0155 19 6 7.3553 0.4928 3.0638 20 6 7.1659 1.2105 4.2548 21 7 8.2466 1.0881 4.9820 22 7 9.1648 0.2986 4.2784 23 6 10.5052 -0.0770 4.7353 24 6 10.4491 -1.4514 5.4052 25 6 11.4555 -0.1318 3.5375 26 6 8.5972 -0.0562 3.1034 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3584 2.1316 0.0896 31 1 2.6212 1.4026 -0.9314 32 1 1.4848 1.8325 2.4994 33 1 3.0309 1.3359 3.2285 34 1 1.8502 4.0565 5.4118 35 1 6.6547 -0.1477 1.2264 36 1 6.2801 1.7657 4.5256 37 1 10.8653 0.6618 5.4513 38 1 10.0890 -2.1901 4.6892 39 1 11.4463 -1.7306 5.7455 40 1 9.7721 -1.4123 6.2585 41 1 12.4528 -0.4108 3.8774 42 1 11.0954 -0.8706 2.8215 43 1 11.4954 0.8473 3.0602 44 1 9.0495 -0.6661 2.3354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581740787.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:17 Heat of formation + Delta-G solvation = 29.665171 kcal Electronic energy + Delta-G solvation = -27129.502684 eV Core-core repulsion = 23277.591609 eV Total energy + Delta-G solvation = -3851.911075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.51497 -41.47572 -39.45252 -37.50616 -36.73660 -35.40576 -34.95692 -33.77685 -31.22367 -30.09008 -29.39155 -28.18518 -27.81900 -25.47635 -24.46928 -23.80061 -22.13761 -21.41966 -20.93753 -20.06761 -18.84659 -18.51670 -18.25383 -17.60913 -16.82665 -16.70767 -16.51121 -16.20307 -16.11476 -15.67026 -15.54460 -15.13224 -14.87132 -14.58028 -14.25193 -14.05047 -13.97614 -13.77522 -13.42198 -13.15611 -13.03865 -13.01236 -12.84408 -12.67523 -12.39097 -12.35325 -12.24175 -12.18365 -11.86566 -11.74940 -11.72372 -11.61797 -10.58503 -10.44037 -10.39206 -10.04899 -9.63175 -8.71812 -8.10438 -6.17280 0.40525 0.91549 1.14076 1.38692 1.42097 1.44223 1.50380 1.73744 1.80933 2.41428 2.48049 2.77093 3.23960 3.51335 3.58532 3.87285 3.96006 4.04959 4.10328 4.14243 4.19710 4.48766 4.49185 4.53661 4.69174 4.77156 4.79247 4.85022 4.86121 4.95608 5.04549 5.06359 5.21298 5.27126 5.36916 5.51064 5.69716 5.76873 5.79424 5.87382 6.10679 6.14429 6.22801 6.37313 6.65112 6.84241 6.92036 7.20838 7.47922 8.97930 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.004020 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.369004 B = 6964.189201 C = 8761.050236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.182 4.182 3 C 0.139 3.861 4 N -0.562 5.562 5 C 0.255 3.745 6 C -0.510 4.510 7 H 0.044 0.956 8 C 0.024 3.976 9 N -0.922 5.922 10 Si 0.948 3.052 11 H -0.268 1.268 12 H -0.286 1.286 13 H -0.279 1.279 14 C 0.509 3.491 15 O -0.557 6.557 16 C 0.482 3.518 17 O -0.478 6.478 18 N -0.610 5.610 19 C -0.022 4.022 20 C 0.029 3.971 21 N -0.318 5.318 22 N -0.356 5.356 23 C 0.147 3.853 24 C -0.159 4.159 25 C -0.158 4.158 26 C 0.049 3.951 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.020 0.980 33 H 0.038 0.962 34 H 0.262 0.738 35 H 0.427 0.573 36 H 0.175 0.825 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.042 0.958 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.861 -11.709 -5.521 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.201 4.201 3 C 0.018 3.982 4 N -0.292 5.292 5 C 0.134 3.866 6 C -0.549 4.549 7 H 0.063 0.937 8 C -0.175 4.175 9 N -0.562 5.562 10 Si 0.774 3.226 11 H -0.193 1.193 12 H -0.212 1.212 13 H -0.204 1.204 14 C 0.292 3.708 15 O -0.439 6.439 16 C 0.264 3.736 17 O -0.349 6.349 18 N -0.260 5.260 19 C -0.126 4.126 20 C -0.157 4.157 21 N -0.141 5.141 22 N -0.141 5.141 23 C 0.047 3.953 24 C -0.217 4.217 25 C -0.216 4.216 26 C -0.101 4.101 27 H 0.123 0.877 28 H 0.137 0.863 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.266 0.734 36 H 0.192 0.808 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.061 0.939 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 15.373 -11.173 -4.022 19.425 hybrid contribution -0.518 0.823 -0.568 1.126 sum 14.855 -10.350 -4.590 18.678 Atomic orbital electron populations 1.24063 0.95036 1.03191 0.97834 1.23151 0.96736 0.97896 1.02324 1.20746 0.91923 0.96731 0.88821 1.48206 1.10780 1.55400 1.14799 1.19356 0.94634 0.93374 0.79192 1.21331 1.35810 0.95925 1.01848 0.93737 1.25449 0.95217 1.01763 0.95094 1.70010 1.41647 1.37755 1.06826 0.85721 0.78569 0.81233 0.77052 1.19338 1.21183 1.20443 1.19870 0.83568 0.80039 0.87353 1.90630 1.78891 1.44291 1.30048 1.20311 0.83549 0.81510 0.88268 1.90913 1.75929 1.36852 1.31235 1.42233 1.12436 1.51378 1.19936 1.17896 0.92801 1.09408 0.92516 1.24289 0.97819 1.00677 0.92884 1.77330 1.00466 1.15259 1.21071 1.48917 1.13787 1.38398 1.13009 1.21690 0.76129 0.98492 0.98976 1.22226 1.04278 0.94572 1.00645 1.22207 0.99630 1.03396 0.96332 1.22238 0.92101 1.03045 0.92714 0.87745 0.86276 0.87746 0.89239 0.89435 0.96183 0.94449 0.92920 0.73423 0.80802 0.88360 0.91273 0.87636 0.93892 0.87436 0.90078 0.92366 0.76160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.23 14.32 67.78 0.97 -3.26 16 2 C -0.18 -5.64 9.84 25.64 0.25 -5.38 16 3 C 0.14 4.98 5.77 85.63 0.49 5.47 16 4 N -0.56 -24.37 2.45 -832.23 -2.04 -26.41 16 5 C 0.25 13.11 4.74 85.63 0.41 13.51 16 6 C -0.51 -28.54 7.74 25.60 0.20 -28.34 16 7 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 8 C 0.02 1.36 5.46 84.65 0.46 1.82 16 9 N -0.92 -55.07 13.29 21.44 0.28 -54.78 16 10 Si 0.95 45.84 29.54 68.60 2.03 47.87 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 13 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 14 C 0.51 21.36 7.67 87.23 0.67 22.03 16 15 O -0.56 -22.36 16.15 -3.29 -0.05 -22.41 16 16 C 0.48 20.30 7.66 87.23 0.67 20.97 16 17 O -0.48 -23.89 9.32 -3.42 -0.03 -23.92 16 18 N -0.61 -20.16 5.45 -305.43 -1.67 -21.83 16 19 C -0.02 -0.71 6.90 37.71 0.26 -0.45 16 20 C 0.03 1.13 10.84 85.35 0.93 2.06 16 21 N -0.32 -11.29 12.56 -56.72 -0.71 -12.01 16 22 N -0.36 -8.94 3.53 -326.83 -1.15 -10.09 16 23 C 0.15 2.29 3.93 44.99 0.18 2.46 16 24 C -0.16 -1.99 9.52 71.98 0.69 -1.30 16 25 C -0.16 -1.37 8.83 71.98 0.64 -0.73 16 26 C 0.05 1.13 10.63 83.61 0.89 2.01 16 27 H 0.10 2.59 7.84 -2.91 -0.02 2.56 16 28 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.10 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.09 3.14 7.71 -2.38 -0.02 3.13 16 31 H 0.09 2.99 7.55 -2.39 -0.02 2.97 16 32 H 0.02 1.08 8.03 -2.39 -0.02 1.06 16 33 H 0.04 2.14 5.92 -2.39 -0.01 2.12 16 34 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 35 H 0.43 11.30 8.31 -92.71 -0.77 10.53 16 36 H 0.18 8.15 5.92 -2.91 -0.02 8.13 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.08 0.50 7.16 -2.39 -0.02 0.49 16 43 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.22 2.77 7.27 -2.91 -0.02 2.75 16 Total: -1.00 -73.81 374.25 4.59 -69.22 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.25 Total: 23.49 kcal Atomic # 6 Polarization: 23.18 SS G_CDS: 7.69 Total: 30.87 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -5.29 Total: -125.12 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -0.08 Total: -46.33 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -73.81 4.59 -69.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581740787.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.886 kcal (2) G-P(sol) polarization free energy of solvation -73.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds