Wall clock time and date at job start Tue Mar 31 2020 12:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00352 * 2 1 4 4 C 1.53002 * 109.47235 * 124.99613 * 3 2 1 5 5 C 1.52998 * 109.47353 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47121 * 60.00038 * 5 4 3 7 7 C 1.53010 * 109.47049 * 300.00070 * 5 4 3 8 8 N 1.46501 * 109.47467 * 180.02562 * 5 4 3 9 9 C 1.34769 * 120.00323 * 180.02562 * 8 5 4 10 10 O 1.21365 * 119.99967 * 359.97438 * 9 8 5 11 11 C 1.49310 * 120.00069 * 179.97438 * 9 8 5 12 12 O 1.21401 * 120.00204 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99824 * 179.97438 * 11 9 8 14 14 C 1.40291 * 119.99920 * 179.97438 * 13 11 9 15 15 C 1.40728 * 126.10038 * 359.96768 * 14 13 11 16 16 N 1.30879 * 108.37511 * 179.78865 * 15 14 13 17 17 N 1.40063 * 108.43330 * 0.38015 * 16 15 14 18 18 C 1.37301 * 126.05067 * 179.87892 * 17 16 15 19 19 H 1.08002 * 119.99622 * 179.68466 * 18 17 16 20 20 C 1.39003 * 119.99972 * 359.96617 * 18 17 16 21 21 N 1.31284 * 120.00043 * 359.72316 * 20 18 17 22 22 Si 1.86801 * 119.99884 * 179.72361 * 20 18 17 23 23 H 1.48504 * 109.46920 * 59.99981 * 22 20 18 24 24 H 1.48504 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47038 * 299.99751 * 22 20 18 26 26 C 1.35786 * 126.10045 * 180.02562 * 14 13 11 27 27 H 1.07995 * 120.00377 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99330 * 0.02562 * 1 2 3 29 29 H 1.08008 * 119.99658 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47257 * 5.00154 * 3 2 1 31 31 H 1.08998 * 109.47264 * 244.99481 * 3 2 1 32 32 H 1.09004 * 109.47056 * 60.00153 * 4 3 2 33 33 H 1.09001 * 109.47389 * 300.00063 * 4 3 2 34 34 H 1.08998 * 109.47418 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47173 * 300.00318 * 6 5 4 36 36 H 1.08998 * 109.47205 * 59.99866 * 6 5 4 37 37 H 1.08996 * 109.46938 * 299.99791 * 7 5 4 38 38 H 1.09000 * 109.46899 * 59.99894 * 7 5 4 39 39 H 1.09003 * 109.46977 * 179.97438 * 7 5 4 40 40 H 0.97005 * 119.99816 * 0.02562 * 8 5 4 41 41 H 0.97005 * 120.00106 * 0.02562 * 13 11 9 42 42 H 1.07994 * 125.80747 * 359.97438 * 15 14 13 43 43 H 0.97004 * 119.99619 * 180.02562 * 21 20 18 44 44 H 1.08006 * 126.25013 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7997 2.6582 1.1821 6 6 2.8099 3.8181 1.3081 7 6 4.5827 2.7956 -0.1253 8 7 4.7303 2.6848 2.3132 9 6 5.5146 3.7620 2.5155 10 8 5.4502 4.7099 1.7603 11 6 6.4626 3.7892 3.6686 12 8 6.5274 2.8409 4.4238 13 7 7.2473 4.8663 3.8706 14 6 8.1377 4.8922 4.9544 15 6 8.3158 3.8706 5.9057 16 7 9.2323 4.2550 6.7573 17 7 9.6681 5.5348 6.3912 18 6 10.6221 6.2797 7.0394 19 1 10.8878 7.2583 6.6675 20 6 11.2501 5.7720 8.1708 21 7 10.9272 4.5824 8.6227 22 14 12.5536 6.7823 9.0481 23 1 11.9592 8.0619 9.5114 24 1 13.0649 6.0225 10.2172 25 1 13.6723 7.0657 8.1136 26 6 8.9806 5.9078 5.2733 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6214 1.4025 -0.9313 32 1 3.7400 0.5064 1.0922 33 1 2.4773 1.2356 2.1131 34 1 3.3546 4.7622 1.3079 35 1 2.1178 3.7981 0.4662 36 1 2.2521 3.7202 2.2394 37 1 5.2878 1.9694 -0.2150 38 1 3.8906 2.7757 -0.9671 39 1 5.1271 3.7400 -0.1252 40 1 4.7821 1.9270 2.9166 41 1 7.1958 5.6239 3.2670 42 1 7.7884 2.9285 5.9274 43 1 11.3652 4.2283 9.4125 44 1 9.0869 6.8409 4.7398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850722214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:00 Heat of formation + Delta-G solvation = 28.601264 kcal Electronic energy + Delta-G solvation = -26111.719221 eV Core-core repulsion = 22259.762012 eV Total energy + Delta-G solvation = -3851.957209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73798 -39.71350 -38.44145 -37.30239 -35.10144 -34.29303 -33.18931 -32.09566 -30.32162 -29.11007 -28.02222 -27.49464 -25.67630 -24.85540 -23.60541 -21.10702 -20.49238 -20.04681 -19.57034 -19.45147 -18.15568 -17.43875 -16.29645 -15.90945 -15.59268 -15.55885 -15.43432 -15.10024 -14.61159 -14.29686 -14.01861 -13.95152 -13.61308 -13.43717 -13.14268 -12.98978 -12.96314 -12.53545 -12.27781 -11.84816 -11.74060 -11.63143 -11.52099 -11.46234 -11.27177 -11.17745 -11.06994 -10.97331 -10.62092 -10.57220 -10.28186 -9.69444 -9.26637 -9.22063 -9.02639 -8.86852 -8.12926 -6.77712 -6.60337 -4.27805 1.67839 1.91374 2.61347 2.94464 3.03536 3.07282 3.34021 3.72351 3.75220 3.95579 4.28526 4.37322 4.52819 4.59679 4.73404 4.76580 4.93200 4.98142 5.03528 5.05812 5.09220 5.32381 5.47104 5.51890 5.55843 5.65515 5.70125 5.75881 5.82154 6.09135 6.18943 6.20201 6.28859 6.35848 6.37282 6.41743 6.76641 6.88590 6.93522 7.16421 7.28916 7.77387 7.88220 8.12387 8.18697 8.49639 8.69923 9.31216 9.59890 10.35398 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.042229 B = 0.002068 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.884833 B =13537.610048 C =13966.328915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C -0.094 4.094 4 C -0.118 4.118 5 C 0.172 3.828 6 C -0.167 4.167 7 C -0.168 4.168 8 N -0.698 5.698 9 C 0.519 3.481 10 O -0.525 6.525 11 C 0.482 3.518 12 O -0.524 6.524 13 N -0.584 5.584 14 C -0.069 4.069 15 C -0.027 4.027 16 N -0.261 5.261 17 N -0.138 5.138 18 C -0.322 4.322 19 H 0.118 0.882 20 C 0.046 3.954 21 N -0.768 5.768 22 Si 0.936 3.064 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.266 1.266 26 C -0.078 4.078 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.412 0.588 41 H 0.409 0.591 42 H 0.177 0.823 43 H 0.276 0.724 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.179 -4.541 -15.362 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.171 4.171 3 C -0.131 4.131 4 C -0.156 4.156 5 C 0.087 3.913 6 C -0.225 4.225 7 C -0.225 4.225 8 N -0.352 5.352 9 C 0.300 3.700 10 O -0.401 6.401 11 C 0.263 3.737 12 O -0.402 6.402 13 N -0.226 5.226 14 C -0.175 4.175 15 C -0.203 4.203 16 N -0.091 5.091 17 N 0.095 4.905 18 C -0.455 4.455 19 H 0.135 0.865 20 C -0.171 4.171 21 N -0.394 5.394 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.191 1.191 26 C -0.229 4.229 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.248 0.752 41 H 0.244 0.756 42 H 0.194 0.806 43 H 0.087 0.913 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.452 -5.013 -14.130 20.824 hybrid contribution 0.055 0.635 -0.398 0.752 sum -14.397 -4.378 -14.529 20.917 Atomic orbital electron populations 1.23867 0.96002 1.01843 1.01565 1.22971 0.96032 0.98517 0.99531 1.20866 0.98062 0.95660 0.98540 1.21790 0.98185 0.96113 0.99504 1.20410 0.88907 0.95855 0.86134 1.22296 0.98715 0.99581 1.01931 1.22301 1.00656 1.03898 0.95686 1.45888 1.39329 1.19688 1.30284 1.20222 0.81305 0.82963 0.85464 1.90664 1.67697 1.35189 1.46557 1.19739 0.83320 0.84174 0.86508 1.90652 1.67891 1.35168 1.46449 1.42150 1.35547 1.17925 1.27009 1.17258 1.03904 0.99658 0.96702 1.24145 1.01002 1.00351 0.94762 1.78262 1.15042 0.93983 1.21852 1.44556 1.21783 1.10098 1.14064 1.19879 1.15332 1.00516 1.09736 0.86484 1.25664 0.98434 0.96200 0.96826 1.70201 1.35425 1.14190 1.19598 0.85872 0.79850 0.79425 0.78889 1.19093 1.20092 1.19096 1.21303 1.03616 1.00825 0.97159 0.88596 0.88603 0.87384 0.90812 0.90294 0.90844 0.90878 0.90165 0.91491 0.92484 0.92457 0.91464 0.90164 0.75166 0.75617 0.80582 0.91303 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.19 14.32 29.01 0.42 -0.78 16 2 C -0.15 -0.96 9.52 -36.03 -0.34 -1.31 16 3 C -0.09 -0.59 4.95 -27.88 -0.14 -0.72 16 4 C -0.12 -0.85 4.37 -26.73 -0.12 -0.97 16 5 C 0.17 1.61 0.83 -131.82 -0.11 1.50 16 6 C -0.17 -1.59 8.05 37.16 0.30 -1.30 16 7 C -0.17 -1.58 8.05 37.16 0.30 -1.28 16 8 N -0.70 -8.16 5.10 -48.08 -0.25 -8.40 16 9 C 0.52 7.64 7.30 -11.65 -0.09 7.56 16 10 O -0.52 -8.11 12.68 5.48 0.07 -8.04 16 11 C 0.48 8.66 7.85 -11.65 -0.09 8.57 16 12 O -0.52 -10.59 13.62 5.45 0.07 -10.51 16 13 N -0.58 -10.98 5.45 -10.45 -0.06 -11.03 16 14 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 15 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 16 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 17 N -0.14 -3.76 3.73 -11.40 -0.04 -3.81 16 18 C -0.32 -8.44 10.25 -14.82 -0.15 -8.59 16 19 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 20 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 21 N -0.77 -21.19 11.81 55.50 0.66 -20.54 16 22 Si 0.94 18.69 29.55 -169.99 -5.02 13.67 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 26 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 27 H 0.10 0.51 8.06 -52.49 -0.42 0.08 16 28 H 0.10 0.54 7.84 -52.48 -0.41 0.13 16 29 H 0.11 0.63 8.06 -52.48 -0.42 0.20 16 30 H 0.07 0.45 6.08 -51.93 -0.32 0.13 16 31 H 0.08 0.46 6.43 -51.93 -0.33 0.13 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.95 6.17 -51.93 -0.32 0.63 16 35 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 39 H 0.08 0.95 6.17 -51.93 -0.32 0.63 16 40 H 0.41 4.53 7.94 -40.82 -0.32 4.21 16 41 H 0.41 6.61 8.29 -40.82 -0.34 6.27 16 42 H 0.18 4.45 5.92 -52.49 -0.31 4.14 16 43 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.15 2.92 8.06 -52.48 -0.42 2.50 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -31.80 364.46 -5.67 -37.48 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -5.85 Total: 14.18 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.07 Total: -1.31 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.63 Total: -50.95 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.14 Total: -18.55 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.80 -5.67 -37.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850722214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.077 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds