Wall clock time and date at job start Tue Mar 31 2020 12:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47025 * 2 1 4 4 H 1.09003 * 109.47195 * 303.35380 * 3 2 1 5 5 C 1.50707 * 109.47184 * 183.35534 * 3 2 1 6 6 H 1.07997 * 119.99864 * 239.99649 * 5 3 2 7 7 C 1.37881 * 119.99584 * 60.00232 * 5 3 2 8 8 N 1.31511 * 120.00301 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99367 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47214 * 60.00093 * 9 7 5 11 11 H 1.48507 * 109.46816 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47413 * 299.99417 * 9 7 5 13 13 N 1.46498 * 109.47274 * 63.35557 * 3 2 1 14 14 C 1.39063 * 120.00145 * 206.66975 * 13 3 2 15 15 C 1.38729 * 119.63072 * 354.15086 * 14 13 3 16 16 C 1.39882 * 118.90889 * 180.25457 * 15 14 13 17 17 C 1.47343 * 120.90035 * 180.02562 * 16 15 14 18 18 C 1.33845 * 120.00079 * 15.93812 * 17 16 15 19 19 N 1.38026 * 120.00096 * 179.97438 * 18 17 16 20 20 C 1.46497 * 119.99582 * 0.02562 * 19 18 17 21 21 C 1.46498 * 119.99921 * 180.02562 * 19 18 17 22 22 C 1.40401 * 118.20060 * 0.02562 * 16 15 14 23 23 N 1.48036 * 120.43054 * 180.02562 * 22 16 15 24 24 O 1.21795 * 119.99764 * 187.88098 * 23 22 16 25 25 O 1.21803 * 119.99502 * 7.87707 * 23 22 16 26 26 C 1.37604 * 119.14242 * 359.97438 * 22 16 15 27 27 N 1.32118 * 121.02147 * 359.97438 * 26 22 16 28 28 H 1.08999 * 109.47477 * 64.32608 * 1 2 3 29 29 H 1.09002 * 109.47270 * 184.32175 * 1 2 3 30 30 H 1.08998 * 109.47296 * 304.32337 * 1 2 3 31 31 H 1.09000 * 109.47001 * 239.99676 * 2 1 3 32 32 H 1.08999 * 109.47355 * 120.00251 * 2 1 3 33 33 H 0.97000 * 120.00079 * 180.02562 * 8 7 5 34 34 H 0.96997 * 119.99928 * 26.67039 * 13 3 2 35 35 H 1.08004 * 120.54358 * 0.24694 * 15 14 13 36 36 H 1.08001 * 119.99769 * 195.94729 * 17 16 15 37 37 H 1.08001 * 120.00152 * 0.02562 * 18 17 16 38 38 H 1.09006 * 109.47052 * 90.00332 * 20 19 18 39 39 H 1.09004 * 109.46900 * 209.99139 * 20 19 18 40 40 H 1.08994 * 109.47753 * 329.99739 * 20 19 18 41 41 H 1.08994 * 109.47089 * 89.99934 * 21 19 18 42 42 H 1.09000 * 109.46907 * 210.00527 * 21 19 18 43 43 H 1.09004 * 109.46914 * 329.99990 * 21 19 18 44 44 H 1.08006 * 119.49191 * 179.97438 * 26 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6283 1.9734 -0.8584 5 6 3.5447 1.4433 -0.0832 6 1 4.1288 1.8954 0.7047 7 6 4.1756 0.8670 -1.1652 8 7 3.4643 0.3161 -2.1245 9 14 6.0408 0.8674 -1.2679 10 1 6.6011 0.1436 -0.0985 11 1 6.4678 0.1910 -2.5192 12 1 6.5363 2.2672 -1.2676 13 7 1.6188 2.1093 1.2345 14 6 1.4532 3.4899 1.2574 15 6 1.8050 4.2414 0.1456 16 6 1.6372 5.6295 0.1870 17 6 1.9958 6.4699 -0.9689 18 6 2.1820 5.9108 -2.1706 19 7 2.5174 6.6981 -3.2536 20 6 2.6704 8.1456 -3.0874 21 6 2.7206 6.0862 -4.5691 22 6 1.1177 6.2003 1.3599 23 7 0.9192 7.6641 1.4571 24 8 0.6055 8.1667 2.5213 25 8 1.0697 8.3657 0.4729 26 6 0.7944 5.3814 2.4174 27 7 0.9653 4.0735 2.3428 28 1 -0.3634 0.4452 -0.9262 29 1 -0.3634 -1.0248 0.0774 30 1 -0.3634 0.5794 0.8487 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.9082 -0.0897 -2.8855 34 1 1.4554 1.5879 2.0359 35 1 2.2020 3.7626 -0.7373 36 1 2.1087 7.5370 -0.8463 37 1 2.0688 4.8438 -2.2932 38 1 3.7050 8.3747 -2.8319 39 1 2.4063 8.6480 -4.0180 40 1 2.0139 8.4911 -2.2889 41 1 1.7744 6.0644 -5.1096 42 1 3.4479 6.6703 -5.1330 43 1 3.0908 5.0687 -4.4432 44 1 0.3947 5.8146 3.3225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161052576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:42 Heat of formation + Delta-G solvation = 56.332276 kcal Electronic energy + Delta-G solvation = -27383.589214 eV Core-core repulsion = 23532.834512 eV Total energy + Delta-G solvation = -3850.754702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62069 -39.83954 -37.87231 -36.56161 -36.04630 -33.84593 -32.96934 -31.74455 -30.21183 -29.26061 -28.21005 -27.21376 -25.57912 -25.02062 -23.36773 -22.89572 -21.62631 -20.25055 -19.34763 -18.47513 -18.25495 -17.20039 -16.98728 -16.84281 -16.52506 -15.64892 -15.20940 -15.00981 -14.85432 -14.21770 -14.02222 -13.78135 -13.28242 -13.15034 -12.78066 -12.69304 -12.57115 -12.28501 -12.17965 -11.96832 -11.70157 -11.53108 -11.37290 -11.10151 -10.98035 -10.87875 -10.66597 -10.52897 -10.29557 -10.22150 -10.14497 -9.99490 -9.60176 -9.34329 -9.22575 -8.69385 -7.44565 -7.08404 -6.32992 -4.44713 0.49422 1.29061 1.99610 2.08910 2.90920 3.12698 3.14900 3.17911 3.21935 3.69636 4.13058 4.20120 4.72798 4.86415 4.94931 4.99878 5.10287 5.15471 5.25320 5.33198 5.37716 5.56948 5.63041 5.77161 5.89717 5.96230 5.97760 6.04350 6.09123 6.17897 6.27443 6.48118 6.57563 6.66208 6.73012 6.82125 7.04091 7.15539 7.27467 7.36294 7.46536 7.49691 7.72516 7.91588 8.06840 8.28845 8.42200 8.64147 9.24184 10.68447 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009515 B = 0.005029 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.114092 B = 5566.224853 C = 7335.461201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.047 0.953 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.070 3.930 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.676 5.676 14 C 0.454 3.546 15 C -0.251 4.251 16 C 0.131 3.869 17 C -0.299 4.299 18 C 0.184 3.816 19 N -0.625 5.625 20 C 0.082 3.918 21 C 0.089 3.911 22 C -0.194 4.194 23 N 0.068 4.932 24 O -0.208 6.208 25 O -0.192 6.192 26 C 0.236 3.764 27 N -0.561 5.561 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.267 0.733 34 H 0.397 0.603 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 7.456 -2.861 8.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.064 0.936 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.297 5.297 14 C 0.215 3.785 15 C -0.277 4.277 16 C 0.123 3.877 17 C -0.326 4.326 18 C 0.059 3.941 19 N -0.332 5.332 20 C -0.061 4.061 21 C -0.054 4.054 22 C -0.288 4.288 23 N 0.574 4.426 24 O -0.413 6.413 25 O -0.400 6.400 26 C 0.070 3.930 27 N -0.282 5.282 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.129 0.871 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.231 0.769 35 H 0.176 0.824 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.122 6.040 -2.856 7.375 hybrid contribution 1.197 0.506 -0.418 1.365 sum -1.926 6.546 -3.274 7.568 Atomic orbital electron populations 1.21851 0.98570 0.99780 1.00550 1.21892 0.92285 0.98758 1.03804 1.19061 0.94399 0.89429 0.80297 0.93568 1.21444 0.90724 1.38398 1.06734 0.92004 1.24868 0.98662 0.94549 0.95230 1.69820 1.35532 1.37292 1.09791 0.86569 0.84939 0.78545 0.77580 1.20075 1.21046 1.20069 1.45674 1.66355 1.01756 1.15871 1.18658 0.84863 0.86674 0.88282 1.21664 1.12592 0.91253 1.02218 1.18499 0.86571 0.92300 0.90375 1.21550 1.19257 1.00944 0.90861 1.21645 0.89657 0.95744 0.87021 1.46238 1.72674 1.06606 1.07638 1.21794 1.01778 0.79887 1.02681 1.21739 1.00842 0.99135 0.83664 1.21672 1.25775 0.79721 1.01646 1.43241 0.96543 1.03345 0.99496 1.94456 1.52286 1.76922 1.17644 1.94323 1.56140 1.61337 1.28215 1.22067 0.88155 0.87398 0.95419 1.67619 1.23520 1.10081 1.26948 0.93563 0.94216 0.94159 0.87115 0.93901 0.92326 0.76872 0.82387 0.82899 0.83948 0.93133 0.91752 0.89830 0.93148 0.91487 0.90874 0.81348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.84 37.16 0.37 -2.19 16 2 C -0.13 -2.56 5.31 -26.73 -0.14 -2.70 16 3 C 0.27 5.64 1.65 -69.08 -0.11 5.52 16 4 H 0.05 1.04 6.62 -51.93 -0.34 0.70 16 5 C -0.53 -12.61 8.46 -34.44 -0.29 -12.90 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.07 1.68 5.30 -17.82 -0.09 1.58 16 8 N -0.89 -21.60 11.30 55.43 0.63 -20.97 16 9 Si 0.90 19.31 29.54 -169.99 -5.02 14.29 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.68 -12.69 4.53 -55.12 -0.25 -12.94 16 14 C 0.45 8.55 7.63 -154.99 -1.18 7.36 16 15 C -0.25 -4.66 8.40 -38.79 -0.33 -4.98 16 16 C 0.13 2.33 5.87 -104.76 -0.61 1.72 16 17 C -0.30 -4.80 8.23 -37.42 -0.31 -5.11 16 18 C 0.18 2.67 9.75 -16.30 -0.16 2.51 16 19 N -0.62 -7.57 3.36 -190.26 -0.64 -8.21 16 20 C 0.08 0.84 10.13 59.85 0.61 1.45 16 21 C 0.09 0.86 10.71 59.85 0.64 1.50 16 22 C -0.19 -3.44 6.89 -79.36 -0.55 -3.99 16 23 N 0.07 1.23 4.45 34.25 0.15 1.38 16 24 O -0.21 -3.75 18.49 -29.46 -0.54 -4.29 16 25 O -0.19 -3.46 15.52 -29.46 -0.46 -3.92 16 26 C 0.24 3.93 10.70 -17.66 -0.19 3.74 16 27 N -0.56 -10.03 10.38 -12.56 -0.13 -10.16 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.65 7.58 -51.93 -0.39 0.26 16 31 H 0.11 2.49 5.99 -51.93 -0.31 2.18 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 34 H 0.40 6.95 8.74 -40.82 -0.36 6.59 16 35 H 0.16 3.06 4.68 -52.48 -0.25 2.81 16 36 H 0.15 2.46 3.29 -52.49 -0.17 2.29 16 37 H 0.14 2.09 6.42 -52.49 -0.34 1.76 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 40 H 0.08 0.94 6.15 -51.93 -0.32 0.62 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 43 H 0.07 0.74 8.04 -51.93 -0.42 0.33 16 44 H 0.17 2.37 7.62 -52.48 -0.40 1.96 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -25.97 365.85 -8.90 -34.86 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.79 Total: 10.94 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.35 Total: -6.49 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.24 Total: -50.90 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -1.00 Total: -8.21 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -25.97 -8.90 -34.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.196 kcal (2) G-P(sol) polarization free energy of solvation -25.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds